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Assessing Possible Mechanisms of Micrometer-Scale Electron Transfer in Heme-Free Geobacter sulfurreducens Pili.

Publication ,  Journal Article
Ru, X; Zhang, P; Beratan, DN
Published in: The journal of physical chemistry. B
June 2019

The electrically conductive pili of Geobacter sulfurreducens are of both fundamental and practical interest. They facilitate extracellular and interspecies electron transfer (ET) and also provide an electrical interface between living and nonliving systems. We examine the possible mechanisms of G. sulfurreducens electron transfer in regimes ranging from incoherent to coherent transport. For plausible ET parameters, electron transfer in G. sulfurreducens bacterial nanowires mediated only by the protein is predicted to be dominated by incoherent hopping between phenylalanine (Phe) and tyrosine (Tyr) residues that are 3 to 4 Å apart, where Phe residues in the hopping pathways may create delocalized "islands." This mechanism could be accessible in the presence of strong oxidants that are capable of oxidizing Phe and Tyr residues. We also examine the physical requirements needed to sustain biological respiration via nanowires. We find that the hopping regimes with ET rates on the order of 108 s-1 between Phe islands and Tyr residues, and conductivities on the order of mS/cm, can support ET fluxes that are compatible with cellular respiration rates, although sustaining this delocalization in the heterogeneous protein environment may be challenging. Computed values of fully coherent electron fluxes through the pili are orders of magnitude too low to support microbial respiration. We suggest experimental probes of the transport mechanism based on mutant studies to examine the roles of aromatic amino acids and yet to be identified redox cofactors.

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Published In

The journal of physical chemistry. B

DOI

EISSN

1520-5207

ISSN

1520-6106

Publication Date

June 2019

Volume

123

Issue

24

Start / End Page

5035 / 5047

Related Subject Headings

  • Thermodynamics
  • Models, Molecular
  • Geobacter
  • Fimbriae Proteins
  • Electron Transport
  • Electric Conductivity
  • 51 Physical sciences
  • 40 Engineering
  • 34 Chemical sciences
  • 09 Engineering
 

Citation

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Ru, X., Zhang, P., & Beratan, D. N. (2019). Assessing Possible Mechanisms of Micrometer-Scale Electron Transfer in Heme-Free Geobacter sulfurreducens Pili. The Journal of Physical Chemistry. B, 123(24), 5035–5047. https://doi.org/10.1021/acs.jpcb.9b01086
Ru, Xuyan, Peng Zhang, and David N. Beratan. “Assessing Possible Mechanisms of Micrometer-Scale Electron Transfer in Heme-Free Geobacter sulfurreducens Pili.The Journal of Physical Chemistry. B 123, no. 24 (June 2019): 5035–47. https://doi.org/10.1021/acs.jpcb.9b01086.
Ru X, Zhang P, Beratan DN. Assessing Possible Mechanisms of Micrometer-Scale Electron Transfer in Heme-Free Geobacter sulfurreducens Pili. The journal of physical chemistry B. 2019 Jun;123(24):5035–47.
Ru, Xuyan, et al. “Assessing Possible Mechanisms of Micrometer-Scale Electron Transfer in Heme-Free Geobacter sulfurreducens Pili.The Journal of Physical Chemistry. B, vol. 123, no. 24, June 2019, pp. 5035–47. Epmc, doi:10.1021/acs.jpcb.9b01086.
Ru X, Zhang P, Beratan DN. Assessing Possible Mechanisms of Micrometer-Scale Electron Transfer in Heme-Free Geobacter sulfurreducens Pili. The journal of physical chemistry B. 2019 Jun;123(24):5035–5047.
Journal cover image

Published In

The journal of physical chemistry. B

DOI

EISSN

1520-5207

ISSN

1520-6106

Publication Date

June 2019

Volume

123

Issue

24

Start / End Page

5035 / 5047

Related Subject Headings

  • Thermodynamics
  • Models, Molecular
  • Geobacter
  • Fimbriae Proteins
  • Electron Transport
  • Electric Conductivity
  • 51 Physical sciences
  • 40 Engineering
  • 34 Chemical sciences
  • 09 Engineering