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Transcriptomic analysis of sea star development through metamorphosis to the highly derived pentameral body plan with a focus on neural transcription factors.

Publication ,  Journal Article
Byrne, M; Koop, D; Strbenac, D; Cisternas, P; Balogh, R; Yang, JYH; Davidson, PL; Wray, G
Published in: DNA research : an international journal for rapid publication of reports on genes and genomes
February 2020

The Echinodermata is characterized by a secondarily evolved pentameral body plan. While the evolutionary origin of this body plan has been the subject of debate, the molecular mechanisms underlying its development are poorly understood. We assembled a de novo developmental transcriptome from the embryo through metamorphosis in the sea star Parvulastra exigua. We use the asteroid model as it represents the basal-type echinoderm body architecture. Global variation in gene expression distinguished the gastrula profile and showed that metamorphic and juvenile stages were more similar to each other than to the pre-metamorphic stages, pointing to the marked changes that occur during metamorphosis. Differential expression and gene ontology (GO) analyses revealed dynamic changes in gene expression throughout development and the transition to pentamery. Many GO terms enriched during late metamorphosis were related to neurogenesis and signalling. Neural transcription factor genes exhibited clusters with distinct expression patterns. A suite of these genes was up-regulated during metamorphosis (e.g. Pax6, Eya, Hey, NeuroD, FoxD, Mbx, and Otp). In situ hybridization showed expression of neural genes in the CNS and sensory structures. Our results provide a foundation to understand the metamorphic transition in echinoderms and the genes involved in development and evolution of pentamery.

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Published In

DNA research : an international journal for rapid publication of reports on genes and genomes

DOI

EISSN

1756-1663

ISSN

1340-2838

Publication Date

February 2020

Volume

27

Issue

1

Start / End Page

dsaa007

Related Subject Headings

  • Transcription Factors
  • Starfish
  • Plant Biology & Botany
  • Neurogenesis
  • Gene Expression Regulation, Developmental
  • Gene Expression Profiling
  • Evolution, Molecular
  • Animals
  • 3105 Genetics
  • 0604 Genetics
 

Citation

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Byrne, M., Koop, D., Strbenac, D., Cisternas, P., Balogh, R., Yang, J. Y. H., … Wray, G. (2020). Transcriptomic analysis of sea star development through metamorphosis to the highly derived pentameral body plan with a focus on neural transcription factors. DNA Research : An International Journal for Rapid Publication of Reports on Genes and Genomes, 27(1), dsaa007. https://doi.org/10.1093/dnares/dsaa007
Byrne, Maria, Demian Koop, Dario Strbenac, Paula Cisternas, Regina Balogh, Jean Yee Hwa Yang, Phillip L. Davidson, and Gregory Wray. “Transcriptomic analysis of sea star development through metamorphosis to the highly derived pentameral body plan with a focus on neural transcription factors.DNA Research : An International Journal for Rapid Publication of Reports on Genes and Genomes 27, no. 1 (February 2020): dsaa007. https://doi.org/10.1093/dnares/dsaa007.
Byrne M, Koop D, Strbenac D, Cisternas P, Balogh R, Yang JYH, et al. Transcriptomic analysis of sea star development through metamorphosis to the highly derived pentameral body plan with a focus on neural transcription factors. DNA research : an international journal for rapid publication of reports on genes and genomes. 2020 Feb;27(1):dsaa007.
Byrne, Maria, et al. “Transcriptomic analysis of sea star development through metamorphosis to the highly derived pentameral body plan with a focus on neural transcription factors.DNA Research : An International Journal for Rapid Publication of Reports on Genes and Genomes, vol. 27, no. 1, Feb. 2020, p. dsaa007. Epmc, doi:10.1093/dnares/dsaa007.
Byrne M, Koop D, Strbenac D, Cisternas P, Balogh R, Yang JYH, Davidson PL, Wray G. Transcriptomic analysis of sea star development through metamorphosis to the highly derived pentameral body plan with a focus on neural transcription factors. DNA research : an international journal for rapid publication of reports on genes and genomes. 2020 Feb;27(1):dsaa007.
Journal cover image

Published In

DNA research : an international journal for rapid publication of reports on genes and genomes

DOI

EISSN

1756-1663

ISSN

1340-2838

Publication Date

February 2020

Volume

27

Issue

1

Start / End Page

dsaa007

Related Subject Headings

  • Transcription Factors
  • Starfish
  • Plant Biology & Botany
  • Neurogenesis
  • Gene Expression Regulation, Developmental
  • Gene Expression Profiling
  • Evolution, Molecular
  • Animals
  • 3105 Genetics
  • 0604 Genetics