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Deep Learning for Pediatric Posterior Fossa Tumor Detection and Classification: A Multi-Institutional Study.

Publication ,  Journal Article
Quon, JL; Bala, W; Chen, LC; Wright, J; Kim, LH; Han, M; Shpanskaya, K; Lee, EH; Tong, E; Iv, M; Seekins, J; Lungren, MP; Braun, KRM; Ho, CY ...
Published in: AJNR Am J Neuroradiol
September 2020

BACKGROUND AND PURPOSE: Posterior fossa tumors are the most common pediatric brain tumors. MR imaging is key to tumor detection, diagnosis, and therapy guidance. We sought to develop an MR imaging-based deep learning model for posterior fossa tumor detection and tumor pathology classification. MATERIALS AND METHODS: The study cohort comprised 617 children (median age, 92 months; 56% males) from 5 pediatric institutions with posterior fossa tumors: diffuse midline glioma of the pons (n = 122), medulloblastoma (n = 272), pilocytic astrocytoma (n = 135), and ependymoma (n = 88). There were 199 controls. Tumor histology served as ground truth except for diffuse midline glioma of the pons, which was primarily diagnosed by MR imaging. A modified ResNeXt-50-32x4d architecture served as the backbone for a multitask classifier model, using T2-weighted MRIs as input to detect the presence of tumor and predict tumor class. Deep learning model performance was compared against that of 4 radiologists. RESULTS: Model tumor detection accuracy exceeded an AUROC of 0.99 and was similar to that of 4 radiologists. Model tumor classification accuracy was 92% with an F1 score of 0.80. The model was most accurate at predicting diffuse midline glioma of the pons, followed by pilocytic astrocytoma and medulloblastoma. Ependymoma prediction was the least accurate. Tumor type classification accuracy and F1 score were higher than those of 2 of the 4 radiologists. CONCLUSIONS: We present a multi-institutional deep learning model for pediatric posterior fossa tumor detection and classification with the potential to augment and improve the accuracy of radiologic diagnosis.

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Published In

AJNR Am J Neuroradiol

DOI

EISSN

1936-959X

Publication Date

September 2020

Volume

41

Issue

9

Start / End Page

1718 / 1725

Location

United States

Related Subject Headings

  • Young Adult
  • Nuclear Medicine & Medical Imaging
  • Male
  • Magnetic Resonance Imaging
  • Infratentorial Neoplasms
  • Infant
  • Image Interpretation, Computer-Assisted
  • Humans
  • Female
  • Deep Learning
 

Citation

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Quon, J. L., Bala, W., Chen, L. C., Wright, J., Kim, L. H., Han, M., … Yeom, K. W. (2020). Deep Learning for Pediatric Posterior Fossa Tumor Detection and Classification: A Multi-Institutional Study. AJNR Am J Neuroradiol, 41(9), 1718–1725. https://doi.org/10.3174/ajnr.A6704
Quon, J. L., W. Bala, L. C. Chen, J. Wright, L. H. Kim, M. Han, K. Shpanskaya, et al. “Deep Learning for Pediatric Posterior Fossa Tumor Detection and Classification: A Multi-Institutional Study.AJNR Am J Neuroradiol 41, no. 9 (September 2020): 1718–25. https://doi.org/10.3174/ajnr.A6704.
Quon JL, Bala W, Chen LC, Wright J, Kim LH, Han M, et al. Deep Learning for Pediatric Posterior Fossa Tumor Detection and Classification: A Multi-Institutional Study. AJNR Am J Neuroradiol. 2020 Sep;41(9):1718–25.
Quon, J. L., et al. “Deep Learning for Pediatric Posterior Fossa Tumor Detection and Classification: A Multi-Institutional Study.AJNR Am J Neuroradiol, vol. 41, no. 9, Sept. 2020, pp. 1718–25. Pubmed, doi:10.3174/ajnr.A6704.
Quon JL, Bala W, Chen LC, Wright J, Kim LH, Han M, Shpanskaya K, Lee EH, Tong E, Iv M, Seekins J, Lungren MP, Braun KRM, Poussaint TY, Laughlin S, Taylor MD, Lober RM, Vogel H, Fisher PG, Grant GA, Ramaswamy V, Vitanza NA, Ho CY, Edwards MSB, Cheshier SH, Yeom KW. Deep Learning for Pediatric Posterior Fossa Tumor Detection and Classification: A Multi-Institutional Study. AJNR Am J Neuroradiol. 2020 Sep;41(9):1718–1725.

Published In

AJNR Am J Neuroradiol

DOI

EISSN

1936-959X

Publication Date

September 2020

Volume

41

Issue

9

Start / End Page

1718 / 1725

Location

United States

Related Subject Headings

  • Young Adult
  • Nuclear Medicine & Medical Imaging
  • Male
  • Magnetic Resonance Imaging
  • Infratentorial Neoplasms
  • Infant
  • Image Interpretation, Computer-Assisted
  • Humans
  • Female
  • Deep Learning