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Cross-ancestry genome-wide meta-analysis of 61,047 cases and 947,237 controls identifies new susceptibility loci contributing to lung cancer.

Publication ,  Journal Article
Byun, J; Han, Y; Li, Y; Xia, J; Long, E; Choi, J; Xiao, X; Zhu, M; Zhou, W; Sun, R; Bossé, Y; Song, Z; Schwartz, A; Lusk, C; Rafnar, T ...
Published in: Nat Genet
August 2022

To identify new susceptibility loci to lung cancer among diverse populations, we performed cross-ancestry genome-wide association studies in European, East Asian and African populations and discovered five loci that have not been previously reported. We replicated 26 signals and identified 10 new lead associations from previously reported loci. Rare-variant associations tended to be specific to populations, but even common-variant associations influencing smoking behavior, such as those with CHRNA5 and CYP2A6, showed population specificity. Fine-mapping and expression quantitative trait locus colocalization nominated several candidate variants and susceptibility genes such as IRF4 and FUBP1. DNA damage assays of prioritized genes in lung fibroblasts indicated that a subset of these genes, including the pleiotropic gene IRF4, potentially exert effects by promoting endogenous DNA damage.

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Published In

Nat Genet

DOI

EISSN

1546-1718

Publication Date

August 2022

Volume

54

Issue

8

Start / End Page

1167 / 1177

Location

United States

Related Subject Headings

  • RNA-Binding Proteins
  • Quantitative Trait Loci
  • Polymorphism, Single Nucleotide
  • Lung Neoplasms
  • Humans
  • Genome-Wide Association Study
  • Genetic Predisposition to Disease
  • Developmental Biology
  • DNA-Binding Proteins
  • 3105 Genetics
 

Citation

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Byun, J., Han, Y., Li, Y., Xia, J., Long, E., Choi, J., … Amos, C. I. (2022). Cross-ancestry genome-wide meta-analysis of 61,047 cases and 947,237 controls identifies new susceptibility loci contributing to lung cancer. Nat Genet, 54(8), 1167–1177. https://doi.org/10.1038/s41588-022-01115-x
Byun, Jinyoung, Younghun Han, Yafang Li, Jun Xia, Erping Long, Jiyeon Choi, Xiangjun Xiao, et al. “Cross-ancestry genome-wide meta-analysis of 61,047 cases and 947,237 controls identifies new susceptibility loci contributing to lung cancer.Nat Genet 54, no. 8 (August 2022): 1167–77. https://doi.org/10.1038/s41588-022-01115-x.
Byun, Jinyoung, et al. “Cross-ancestry genome-wide meta-analysis of 61,047 cases and 947,237 controls identifies new susceptibility loci contributing to lung cancer.Nat Genet, vol. 54, no. 8, Aug. 2022, pp. 1167–77. Pubmed, doi:10.1038/s41588-022-01115-x.
Byun J, Han Y, Li Y, Xia J, Long E, Choi J, Xiao X, Zhu M, Zhou W, Sun R, Bossé Y, Song Z, Schwartz A, Lusk C, Rafnar T, Stefansson K, Zhang T, Zhao W, Pettit RW, Liu Y, Li X, Zhou H, Walsh KM, Gorlov I, Gorlova O, Zhu D, Rosenberg SM, Pinney S, Bailey-Wilson JE, Mandal D, de Andrade M, Gaba C, Willey JC, You M, Anderson M, Wiencke JK, Albanes D, Lam S, Tardon A, Chen C, Goodman G, Bojeson S, Brenner H, Landi MT, Chanock SJ, Johansson M, Muley T, Risch A, Wichmann H-E, Bickeböller H, Christiani DC, Rennert G, Arnold S, Field JK, Shete S, Le Marchand L, Melander O, Brunnstrom H, Liu G, Andrew AS, Kiemeney LA, Shen H, Zienolddiny S, Grankvist K, Caporaso N, Cox A, Hong Y-C, Yuan J-M, Lazarus P, Schabath MB, Aldrich MC, Patel A, Lan Q, Rothman N, Taylor F, Kachuri L, Witte JS, Sakoda LC, Spitz M, Brennan P, Lin X, McKay J, Hung RJ, Amos CI. Cross-ancestry genome-wide meta-analysis of 61,047 cases and 947,237 controls identifies new susceptibility loci contributing to lung cancer. Nat Genet. 2022 Aug;54(8):1167–1177.

Published In

Nat Genet

DOI

EISSN

1546-1718

Publication Date

August 2022

Volume

54

Issue

8

Start / End Page

1167 / 1177

Location

United States

Related Subject Headings

  • RNA-Binding Proteins
  • Quantitative Trait Loci
  • Polymorphism, Single Nucleotide
  • Lung Neoplasms
  • Humans
  • Genome-Wide Association Study
  • Genetic Predisposition to Disease
  • Developmental Biology
  • DNA-Binding Proteins
  • 3105 Genetics