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Towards real-time STEM simulations through targeted subsampling strategies.

Publication ,  Journal Article
Robinson, AW; Wells, J; Nicholls, D; Moshtaghpour, A; Chi, M; Kirkland, AI; Browning, ND
Published in: Journal of microscopy
April 2023

Scanning transmission electron microscopy images can be complex to interpret on the atomic scale as the contrast is sensitive to multiple factors such as sample thickness, composition, defects and aberrations. Simulations are commonly used to validate or interpret real experimental images, but they come at a cost of either long computation times or specialist hardware such as graphics processing units. Recent works in compressive sensing for experimental STEM images have shown that it is possible to significantly reduce the amount of acquired signal and still recover the full image without significant loss of image quality, and therefore it is proposed here that similar methods can be applied to STEM simulations. In this paper, we demonstrate a method that can significantly increase the efficiency of STEM simulations through a targeted sampling strategy, along with a new approach to independently subsample each frozen phonon layer. We show the effectiveness of this method by simulating a SrTiO3 grain boundary and monolayer 2H-MoS2 containing a sulphur vacancy using the abTEM software. We also show how this method is not limited to only traditional multislice methods, but also increases the speed of the PRISM simulation method. Furthermore, we discuss the possibility for STEM simulations to seed the acquisition of real data, to potentially lead the way to self-driving (correcting) STEM.

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Published In

Journal of microscopy

DOI

EISSN

1365-2818

ISSN

0022-2720

Publication Date

April 2023

Volume

290

Issue

1

Start / End Page

53 / 66

Related Subject Headings

  • Microscopy
  • 4016 Materials engineering
  • 3406 Physical chemistry
  • 3101 Biochemistry and cell biology
  • 0912 Materials Engineering
  • 0601 Biochemistry and Cell Biology
  • 0204 Condensed Matter Physics
 

Citation

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ICMJE
MLA
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Robinson, A. W., Wells, J., Nicholls, D., Moshtaghpour, A., Chi, M., Kirkland, A. I., & Browning, N. D. (2023). Towards real-time STEM simulations through targeted subsampling strategies. Journal of Microscopy, 290(1), 53–66. https://doi.org/10.1111/jmi.13177
Robinson, Alex W., Jack Wells, Daniel Nicholls, Amirafshar Moshtaghpour, Miaofang Chi, Angus I. Kirkland, and Nigel D. Browning. “Towards real-time STEM simulations through targeted subsampling strategies.Journal of Microscopy 290, no. 1 (April 2023): 53–66. https://doi.org/10.1111/jmi.13177.
Robinson AW, Wells J, Nicholls D, Moshtaghpour A, Chi M, Kirkland AI, et al. Towards real-time STEM simulations through targeted subsampling strategies. Journal of microscopy. 2023 Apr;290(1):53–66.
Robinson, Alex W., et al. “Towards real-time STEM simulations through targeted subsampling strategies.Journal of Microscopy, vol. 290, no. 1, Apr. 2023, pp. 53–66. Epmc, doi:10.1111/jmi.13177.
Robinson AW, Wells J, Nicholls D, Moshtaghpour A, Chi M, Kirkland AI, Browning ND. Towards real-time STEM simulations through targeted subsampling strategies. Journal of microscopy. 2023 Apr;290(1):53–66.
Journal cover image

Published In

Journal of microscopy

DOI

EISSN

1365-2818

ISSN

0022-2720

Publication Date

April 2023

Volume

290

Issue

1

Start / End Page

53 / 66

Related Subject Headings

  • Microscopy
  • 4016 Materials engineering
  • 3406 Physical chemistry
  • 3101 Biochemistry and cell biology
  • 0912 Materials Engineering
  • 0601 Biochemistry and Cell Biology
  • 0204 Condensed Matter Physics