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Microarray analysis of gene expression in adult retinal ganglion cells.

Publication ,  Journal Article
Ivanov, D; Dvoriantchikova, G; Nathanson, L; McKinnon, SJ; Shestopalov, VI
Published in: FEBS Lett
January 9, 2006

Retinal ganglion cells (RGCs) transfer visual information to the brain and are known to be susceptible to selective degeneration in various neuropathies such as glaucoma. This selective vulnerability suggests that these highly specialized neurons possess a distinct gene expression profile that becomes altered by neuropathy-associated stresses, which lead to the RGC death. In this study, to identify genes expressed predominantly in adult RGCs, a global transcriptional profile of purified primary RGCs has been compared to that of the whole retina. To avoid alterations of the original gene expression profile by cell culture conditions, we isolated RNA directly from adult RGCs purified by immunopanning without prior sub-cultivation. Genes expressed predominantly in RGCs included: Nrg1, Rgn, 14-3-3 family (Ywhah, Ywhaz, Ywhab), Nrn1, Gap43, Vsnl1, Rgs4. Some of these genes may serve as novel markers for these neurons. Our analysis revealed enrichment in genes controlling the pro-survival pathways in RGCs as compared to other retinal cells.

Duke Scholars

Published In

FEBS Lett

DOI

ISSN

0014-5793

Publication Date

January 9, 2006

Volume

580

Issue

1

Start / End Page

331 / 335

Location

England

Related Subject Headings

  • Retinal Ganglion Cells
  • Rats
  • Oligonucleotide Array Sequence Analysis
  • Glaucoma
  • Gene Expression Regulation
  • Gene Expression Profiling
  • Eye Proteins
  • Cell Death
  • Biomarkers
  • Biochemistry & Molecular Biology
 

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Ivanov, D., Dvoriantchikova, G., Nathanson, L., McKinnon, S. J., & Shestopalov, V. I. (2006). Microarray analysis of gene expression in adult retinal ganglion cells. FEBS Lett, 580(1), 331–335. https://doi.org/10.1016/j.febslet.2005.12.017
Ivanov, Dmitry, Galina Dvoriantchikova, Lubov Nathanson, Stuart J. McKinnon, and Valery I. Shestopalov. “Microarray analysis of gene expression in adult retinal ganglion cells.FEBS Lett 580, no. 1 (January 9, 2006): 331–35. https://doi.org/10.1016/j.febslet.2005.12.017.
Ivanov D, Dvoriantchikova G, Nathanson L, McKinnon SJ, Shestopalov VI. Microarray analysis of gene expression in adult retinal ganglion cells. FEBS Lett. 2006 Jan 9;580(1):331–5.
Ivanov, Dmitry, et al. “Microarray analysis of gene expression in adult retinal ganglion cells.FEBS Lett, vol. 580, no. 1, Jan. 2006, pp. 331–35. Pubmed, doi:10.1016/j.febslet.2005.12.017.
Ivanov D, Dvoriantchikova G, Nathanson L, McKinnon SJ, Shestopalov VI. Microarray analysis of gene expression in adult retinal ganglion cells. FEBS Lett. 2006 Jan 9;580(1):331–335.
Journal cover image

Published In

FEBS Lett

DOI

ISSN

0014-5793

Publication Date

January 9, 2006

Volume

580

Issue

1

Start / End Page

331 / 335

Location

England

Related Subject Headings

  • Retinal Ganglion Cells
  • Rats
  • Oligonucleotide Array Sequence Analysis
  • Glaucoma
  • Gene Expression Regulation
  • Gene Expression Profiling
  • Eye Proteins
  • Cell Death
  • Biomarkers
  • Biochemistry & Molecular Biology