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SpA: web-accessible spectratype analysis: data management, statistical analysis and visualization.

Publication ,  Journal Article
He, M; Tomfohr, JK; Devlin, BH; Sarzotti, M; Markert, ML; Kepler, TB
Published in: Bioinformatics
September 15, 2005

SUMMARY: SpA is a web-accessible system for the management, visualization and statistical analysis of T-cell receptor spectratype data. Users upload data from their spectratype analyzers to SpA, which saves the raw data and user-defined supplementary covariates to a secure database. The statistical engine performs several data analyses and statistical summaries. The visualization engine displays spectratype histograms in a Java applet and in an image file suitable for download. All of these results are also saved to the database and remain accessible to the user. Additional statistical tools specific to the analysis of multiple spectratypes are also available through the SpA interface. AVAILABILITY: The service is freely accessible via the web at http://www.duke.edu/~kepler/spa.html. Additional technical support and specialized statistical analysis and consultation are available by arrangement with the authors and, depending on the service requested, may be subject to fee.

Duke Scholars

Published In

Bioinformatics

DOI

ISSN

1367-4803

Publication Date

September 15, 2005

Volume

21

Issue

18

Start / End Page

3697 / 3699

Location

England

Related Subject Headings

  • User-Computer Interface
  • Software
  • Sequence Analysis, Protein
  • Sequence Analysis, DNA
  • Receptors, Antigen, T-Cell
  • Programming Languages
  • Internet
  • Information Storage and Retrieval
  • Humans
  • Genes, T-Cell Receptor
 

Citation

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MLA
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He, M., Tomfohr, J. K., Devlin, B. H., Sarzotti, M., Markert, M. L., & Kepler, T. B. (2005). SpA: web-accessible spectratype analysis: data management, statistical analysis and visualization. Bioinformatics, 21(18), 3697–3699. https://doi.org/10.1093/bioinformatics/bti600
He, Min, John K. Tomfohr, Blythe H. Devlin, Marcella Sarzotti, M Louise Markert, and Thomas B. Kepler. “SpA: web-accessible spectratype analysis: data management, statistical analysis and visualization.Bioinformatics 21, no. 18 (September 15, 2005): 3697–99. https://doi.org/10.1093/bioinformatics/bti600.
He M, Tomfohr JK, Devlin BH, Sarzotti M, Markert ML, Kepler TB. SpA: web-accessible spectratype analysis: data management, statistical analysis and visualization. Bioinformatics. 2005 Sep 15;21(18):3697–9.
He, Min, et al. “SpA: web-accessible spectratype analysis: data management, statistical analysis and visualization.Bioinformatics, vol. 21, no. 18, Sept. 2005, pp. 3697–99. Pubmed, doi:10.1093/bioinformatics/bti600.
He M, Tomfohr JK, Devlin BH, Sarzotti M, Markert ML, Kepler TB. SpA: web-accessible spectratype analysis: data management, statistical analysis and visualization. Bioinformatics. 2005 Sep 15;21(18):3697–3699.
Journal cover image

Published In

Bioinformatics

DOI

ISSN

1367-4803

Publication Date

September 15, 2005

Volume

21

Issue

18

Start / End Page

3697 / 3699

Location

England

Related Subject Headings

  • User-Computer Interface
  • Software
  • Sequence Analysis, Protein
  • Sequence Analysis, DNA
  • Receptors, Antigen, T-Cell
  • Programming Languages
  • Internet
  • Information Storage and Retrieval
  • Humans
  • Genes, T-Cell Receptor