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On-chip sample preparation with multiple dilutions using digital microfluidics

Publication ,  Journal Article
Mitra, D; Roy, S; Chakrabarty, K; Bhattacharya, BB
Published in: Proceedings - 2012 IEEE Computer Society Annual Symposium on VLSI, ISVLSI 2012
October 29, 2012

In many biochemical protocols, solution preparation is a preprocessing step for mixing two or more fluids in a given ratio. Dilution of a biochemical sample/reagent is the special case of mixing or solution preparation where only two different type of fluids, one of which is a buffer solution, are mixed at a certain ratio corresponding to the desired concentration factor. Bioassays implemented on digital micro fluidic biochips may require several different concentration values of the same sample/reagent. In this paper, we present a scheme in which a set of different target droplets (with concentration values ranged between 0\% and 100\%) can be produced with an acceptable error bound in minimum mix-split steps. The method does not require any intermediate storage since, at each step, the current droplet is mixed only with the sample (with 100% concentration) or with the buffer (with 0% concentration) droplet. The problem of generating multiple target concentrations has been formulated based on a binary de Bruijn graph. The proposed technique outperforms the existing single target based methods in terms of both the number of mix-split steps and the number of waste droplets. This in turn, reduces the execution time, the number of electrode actuations, and sample/reagent requirement. A digital micro fluidic platform can also be easily designed to implement such on-chip sample preparation. © 2012 IEEE.

Published In

Proceedings - 2012 IEEE Computer Society Annual Symposium on VLSI, ISVLSI 2012

DOI

Publication Date

October 29, 2012

Start / End Page

314 / 319
 

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Mitra, D., Roy, S., Chakrabarty, K., & Bhattacharya, B. B. (2012). On-chip sample preparation with multiple dilutions using digital microfluidics. Proceedings - 2012 IEEE Computer Society Annual Symposium on VLSI, ISVLSI 2012, 314–319. https://doi.org/10.1109/ISVLSI.2012.52
Mitra, D., S. Roy, K. Chakrabarty, and B. B. Bhattacharya. “On-chip sample preparation with multiple dilutions using digital microfluidics.” Proceedings - 2012 IEEE Computer Society Annual Symposium on VLSI, ISVLSI 2012, October 29, 2012, 314–19. https://doi.org/10.1109/ISVLSI.2012.52.
Mitra D, Roy S, Chakrabarty K, Bhattacharya BB. On-chip sample preparation with multiple dilutions using digital microfluidics. Proceedings - 2012 IEEE Computer Society Annual Symposium on VLSI, ISVLSI 2012. 2012 Oct 29;314–9.
Mitra, D., et al. “On-chip sample preparation with multiple dilutions using digital microfluidics.” Proceedings - 2012 IEEE Computer Society Annual Symposium on VLSI, ISVLSI 2012, Oct. 2012, pp. 314–19. Scopus, doi:10.1109/ISVLSI.2012.52.
Mitra D, Roy S, Chakrabarty K, Bhattacharya BB. On-chip sample preparation with multiple dilutions using digital microfluidics. Proceedings - 2012 IEEE Computer Society Annual Symposium on VLSI, ISVLSI 2012. 2012 Oct 29;314–319.

Published In

Proceedings - 2012 IEEE Computer Society Annual Symposium on VLSI, ISVLSI 2012

DOI

Publication Date

October 29, 2012

Start / End Page

314 / 319