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imiRTP: An integrated method to identifying miRNA-target interactions in Arabidopsis thaliana

Publication ,  Journal Article
Ding, J; Yu, S; Ohler, U; Guan, J; Zhou, S
Published in: Proceedings - 2011 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2011
December 1, 2011

MiRNA are about 22nt long small noncoding RNAs that post transcription ally regulate gene expression in animals, plants and protozoa. Confident identification of MiRNA-Target Interactions (MTI) is vital to understand their function. Currently, several integrated programs and databases are available for animal miRNAs, the mechanisms of which are significantly different from plant miRNAs. Here we present imiRTP, an integrated MTI prediction and analysis toolkit for Arabidopsis thaliana. It features two important functions: (i) combination of several effective plant miRNA target prediction methods provides a sufficiently large MTI candidate set, and (ii) different filters allow for an efficient selection of potential targets. The modularity of imiRTP enables the prediction of high quality targets on genome-wide scale. © 2011 IEEE.

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Proceedings - 2011 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2011

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Publication Date

December 1, 2011

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100 / 104
 

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Ding, J., Yu, S., Ohler, U., Guan, J., & Zhou, S. (2011). imiRTP: An integrated method to identifying miRNA-target interactions in Arabidopsis thaliana. Proceedings - 2011 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2011, 100–104. https://doi.org/10.1109/BIBM.2011.13
Ding, J., S. Yu, U. Ohler, J. Guan, and S. Zhou. “imiRTP: An integrated method to identifying miRNA-target interactions in Arabidopsis thaliana.” Proceedings - 2011 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2011, December 1, 2011, 100–104. https://doi.org/10.1109/BIBM.2011.13.
Ding J, Yu S, Ohler U, Guan J, Zhou S. imiRTP: An integrated method to identifying miRNA-target interactions in Arabidopsis thaliana. Proceedings - 2011 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2011. 2011 Dec 1;100–4.
Ding, J., et al. “imiRTP: An integrated method to identifying miRNA-target interactions in Arabidopsis thaliana.” Proceedings - 2011 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2011, Dec. 2011, pp. 100–04. Scopus, doi:10.1109/BIBM.2011.13.
Ding J, Yu S, Ohler U, Guan J, Zhou S. imiRTP: An integrated method to identifying miRNA-target interactions in Arabidopsis thaliana. Proceedings - 2011 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2011. 2011 Dec 1;100–104.

Published In

Proceedings - 2011 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2011

DOI

Publication Date

December 1, 2011

Start / End Page

100 / 104