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PHENIX: a comprehensive Python-based system for macromolecular structure solution.

Publication ,  Journal Article
Adams, PD; Afonine, PV; Bunkóczi, G; Chen, VB; Davis, IW; Echols, N; Headd, JJ; Hung, L-W; Kapral, GJ; Grosse-Kunstleve, RW; McCoy, AJ ...
Published in: Acta Crystallogr D Biol Crystallogr
February 2010

Macromolecular X-ray crystallography is routinely applied to understand biological processes at a molecular level. However, significant time and effort are still required to solve and complete many of these structures because of the need for manual interpretation of complex numerical data using many software packages and the repeated use of interactive three-dimensional graphics. PHENIX has been developed to provide a comprehensive system for macromolecular crystallographic structure solution with an emphasis on the automation of all procedures. This has relied on the development of algorithms that minimize or eliminate subjective input, the development of algorithms that automate procedures that are traditionally performed by hand and, finally, the development of a framework that allows a tight integration between the algorithms.

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Published In

Acta Crystallogr D Biol Crystallogr

DOI

EISSN

1399-0047

Publication Date

February 2010

Volume

66

Issue

Pt 2

Start / End Page

213 / 221

Location

United States

Related Subject Headings

  • Software Design
  • Models, Molecular
  • Crystallography, X-Ray
  • Biophysics
  • Algorithms
  • 51 Physical sciences
  • 34 Chemical sciences
  • 31 Biological sciences
  • 06 Biological Sciences
  • 03 Chemical Sciences
 

Citation

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Adams, P. D., Afonine, P. V., Bunkóczi, G., Chen, V. B., Davis, I. W., Echols, N., … Zwart, P. H. (2010). PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr D Biol Crystallogr, 66(Pt 2), 213–221. https://doi.org/10.1107/S0907444909052925
Adams, Paul D., Pavel V. Afonine, Gábor Bunkóczi, Vincent B. Chen, Ian W. Davis, Nathaniel Echols, Jeffrey J. Headd, et al. “PHENIX: a comprehensive Python-based system for macromolecular structure solution.Acta Crystallogr D Biol Crystallogr 66, no. Pt 2 (February 2010): 213–21. https://doi.org/10.1107/S0907444909052925.
Adams PD, Afonine PV, Bunkóczi G, Chen VB, Davis IW, Echols N, et al. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):213–21.
Adams, Paul D., et al. “PHENIX: a comprehensive Python-based system for macromolecular structure solution.Acta Crystallogr D Biol Crystallogr, vol. 66, no. Pt 2, Feb. 2010, pp. 213–21. Pubmed, doi:10.1107/S0907444909052925.
Adams PD, Afonine PV, Bunkóczi G, Chen VB, Davis IW, Echols N, Headd JJ, Hung L-W, Kapral GJ, Grosse-Kunstleve RW, McCoy AJ, Moriarty NW, Oeffner R, Read RJ, Richardson DC, Richardson JS, Terwilliger TC, Zwart PH. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):213–221.
Journal cover image

Published In

Acta Crystallogr D Biol Crystallogr

DOI

EISSN

1399-0047

Publication Date

February 2010

Volume

66

Issue

Pt 2

Start / End Page

213 / 221

Location

United States

Related Subject Headings

  • Software Design
  • Models, Molecular
  • Crystallography, X-Ray
  • Biophysics
  • Algorithms
  • 51 Physical sciences
  • 34 Chemical sciences
  • 31 Biological sciences
  • 06 Biological Sciences
  • 03 Chemical Sciences