-
Subject Areas on Research
-
3D maps of RNA interhelical junctions.
-
A Bayesian Hierarchical Model to Estimate DNA Methylation Conservation in Colorectal Tumors.
-
A Bayesian approach for determining protein side-chain rotamer conformations using unassigned NOE data.
-
A Bayesian network approach to operon prediction.
-
A Bayesian non-parametric mixed-effects model of microbial growth curves.
-
A Model for Migratory B Cell Oscillations from Receptor Down-Regulation Induced by External Chemokine Fields
-
A Notch positive feedback in the intestinal stem cell niche is essential for stem cell self-renewal.
-
A Three-Threshold Learning Rule Approaches the Maximal Capacity of Recurrent Neural Networks.
-
A bayesian analysis strategy for cross-study translation of gene expression biomarkers.
-
A behavioral summary for completely random nets
-
A biometrical genome search in rats reveals the multigenic basis of blood pressure variation.
-
A brave new synthetic world. A report of the first meeting on 'Frontiers in Synthetic Biology', Boston, USA, 1-2 December 2008.
-
A carrageenan hydrogel stabilized colloidal gold multi-enzyme biosensor electrode utilizing immobilized horseradish peroxidase and cholesterol oxidase/cholesterol esterase to detect cholesterol in serum and whole blood.
-
A case study in the functional consequences of scaling the sizes of realistic cortical models.
-
A case study of the reproducibility of transcriptional reporter cell-based RNAi screens in Drosophila.
-
A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples.
-
A collection of bioconductor methods to visualize gene-list annotations.
-
A compact CMOS biochip immunosensor towards the detection of a single bacteria.
-
A comparative analysis of the information content in long and short SAGE libraries.
-
A comparison of different bivariate correlated frailty models and estimation strategies.
-
A comparison of genetic imputation methods using Long Life Family Study genotypes and sequence data with the 1000 Genome reference panel
-
A comparison of graph- and kernel-based -omics data integration algorithms for classifying complex traits.
-
A comparison of methods for RNA extraction from lymphocytes for RT-PCR.
-
A comprehensive joint analysis of the long and short RNA transcriptomes of human erythrocytes.
-
A computational framework to assess genome-wide distribution of polymorphic human endogenous retrovirus-K In human populations.
-
A confirmation bias in perceptual decision-making due to hierarchical approximate inference.
-
A dynamic H3K27ac signature identifies VEGFA-stimulated endothelial enhancers and requires EP300 activity.
-
A facile approach to immobilize protein for biosensor: self-assembled supported bilayer lipid membranes on glassy carbon electrode.
-
A flexible statistical model for alignment of label-free proteomics data--incorporating ion mobility and product ion information.
-
A forecasting model of disease prevalence based on the McKendrick-von Foerster equation.
-
A generalized model for multi-marker analysis of cell cycle progression in synchrony experiments.
-
A generalized workflow for conducting electric field-optimized, fMRI-guided, transcranial magnetic stimulation.
-
A geometric arrangement algorithm for structure determination of symmetric protein homo-oligomers from NOEs and RDCs.
-
A heterozygous IDH1R132H/WT mutation induces genome-wide alterations in DNA methylation.
-
A high-density integrated genetic linkage and radiation hybrid map of the laboratory rat.
-
A hybrid bayesian approach for genome-wide association studies on related individuals.
-
A kinetic model for the intramolecular distribution of 15
N in uric acid in patients with primary gout fed 15
N-glycine
-
A machine learning approach for the prediction of protein surface loop flexibility.
-
A map of 75 human ribosomal protein genes.
-
A map of human cancer signaling.
-
A mathematical model for LH release in response to continuous and pulsatile exposure of gonadotrophs to GnRH
-
A mathematical model for histamine synthesis, release, and control in varicosities
-
A mathematical model for persistent post-CSD vasoconstriction.
-
A mathematical model of circadian rhythms and dopamine
-
A mathematical model of circadian rhythms and dopamine.
-
A mathematical model of glutathione metabolism.
-
A methodological checklist for fMRI drug cue reactivity studies: development and expert consensus.
-
A miniaturized technique for assessing protein thermodynamics and function using fast determination of quantitative cysteine reactivity.
-
A model for migratory B cell oscillations from receptor down-regulation induced by external chemokine fields.
-
A new analysis tool for individual-level allele frequency for genomic studies.
-
A new approach for rare variation collapsing on functional protein domains implicates specific genic regions in ALS.
-
A new class of temporarily phenotypic enhancers identified by CRISPR/Cas9-mediated genetic screening.
-
A new emu genome illuminates the evolution of genome configuration and nuclear architecture of avian chromosomes.
-
A new method to accurately identify single nucleotide variants using small FFPE breast samples.
-
A novel cross-disciplinary multi-institute approach to translational cancer research: Lessons learned from Pennsylvania Cancer Alliance Bioinformatics Consortium (PCABC)
-
A novel multi-tissue RNA diagnostic of healthy ageing relates to cognitive health status.
-
A novel stochastic simulation approach enables exploration of mechanisms for regulating polarity site movement.
-
A nucleosome-guided map of transcription factor binding sites in yeast.
-
A permutation-based multiple testing method for time-course microarray experiments.
-
A phased strategy to differentiate human CD14+ monocytes into classically and alternatively activated macrophages and dendritic cells
-
A power-law dependence of bacterial invasion on mammalian host receptors.
-
A preliminary gene map for the Van der Woude syndrome critical region derived from 900 kb of genomic sequence at 1q32-q41.
-
A proposal for a coordinated effort for the determination of brainwide neuroanatomical connectivity in model organisms at a mesoscopic scale.
-
A resistor interpretation of general anisotropic cardiac tissue.
-
A resource of mapped human bacterial artificial chromosome clones
-
A robust and efficient method for estimating enzyme complex abundance and metabolic flux from expression data.
-
A second locus for hereditary hemorrhagic telangiectasia maps to chromosome 12.
-
A semiclassical theory for nerve excitation by a low intensity electromagnetic field.
-
A simple BASIC program allows the rapid entry of DNA nucleotide sequences into personal computers.
-
A simple model for viral decay dynamics and the distribution of infected cell life spans in SHIV-infected infant rhesus macaques.
-
A single transcription factor regulates evolutionarily diverse but functionally linked metabolic pathways in response to nutrient availability.
-
A statistical and biological response to an informatics appraisal of healthy aging gene signatures.
-
A stele-enriched gene regulatory network in the Arabidopsis root.
-
A study of the repetitive structure and distribution of short motifs in human genomic sequences.
-
A survey of plant and algal genomes and transcriptomes reveals new insights into the evolution and function of the cellulose synthase superfamily.
-
A synthetic Escherichia coli predator-prey ecosystem.
-
A targeted analysis reveals relevant shifts in the methylation and transcription of genes responsible for bile acid homeostasis and drug metabolism in non-alcoholic fatty liver disease.
-
A topological data analytic approach for discovering biophysical signatures in protein dynamics.
-
A transcription factor affinity-based code for mammalian transcription initiation.
-
A two-current model for the dynamics of cardiac membrane.
-
A xanthine oxidase/colloidal gold enzyme electrode for amperometric biosensor applications
-
AP-1 subunits converge promiscuously at enhancers to potentiate transcription.
-
ASCENT (Automated Simulations to Characterize Electrical Nerve Thresholds): A pipeline for sample-specific computational modeling of electrical stimulation of peripheral nerves.
-
Abrupt population changes along smooth environmental gradients
-
Acoustofluidic multimodal diagnostic system for Alzheimer's disease.
-
Activated Oncogenic Pathway Modifies Iron Network in Breast Epithelial Cells: A Dynamic Modeling Perspective.
-
Advances to Bayesian network inference for generating causal networks from observational biological data.
-
Advancing the functional utility of PAR-CLIP by quantifying background binding to mRNAs and lncRNAs.
-
Advantages of mRNA amplification for microarray analysis.
-
Age trends in the prevalence of cervical squamous intraepithelial lesions among HIV-positive women in Cameroon: a cross-sectional study.
-
Alginate encapsulation is a highly reproducible method for tumor cell implantation in dorsal skinfold chambers.
-
Algorithm for backrub motions in protein design.
-
All-Atom Contacts: A New Approach to Structure Validation
-
All-atom contacts: a new approach to structure validation.
-
Alternative ion channel splicing in mesial temporal lobe epilepsy and Alzheimer's disease.
-
Amperometric glucose biosensor based on lipid film.
-
Amplification of antigen-antibody interactions based on biotin labeled protein-streptavidin network complex using impedance spectroscopy.
-
An RNA tertiary switch by modifying how helices are tethered.
-
An algorithm for the reconstruction of consensus sequences of ancient segmental duplications and transposon copies in eukaryotic genomes.
-
An alignment-free method to identify candidate orthologous enhancers in multiple Drosophila genomes.
-
An approach to modelling in immunology.
-
An asymptotic solution for traveling waves of a nonlinear-diffusion Fisher's equation
-
An automated decision-tree approach to predicting protein interaction hot spots.
-
An empirical analysis of training protocols for probabilistic gene finders
-
An empirical model for electrostatic interactions in proteins incorporating multiple geometry-dependent dielectric constants.
-
An encyclopedia of mouse DNA elements (Mouse ENCODE)
-
An encyclopedia of mouse DNA elements (Mouse ENCODE).
-
An ensemble model of competitive multi-factor binding of the genome.
-
An image processing approach to computing distances between RNA secondary structures dot plots.
-
An individualized predictor of health and disease using paired reference and target samples.
-
An integrated YAC map of the human X chromosome.
-
An integrative approach to characterize disease-specific pathways and their coordination: a case study in cancer.
-
An ionically based mapping model with memory for cardiac restitution.
-
Analysis of Homeostatic Mechanisms in Biochemical Networks.
-
Analysis of the mouse transcriptome for genes involved in the function of the nervous system.
-
Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera stricta.
-
Angiogenesis: an adaptive dynamic biological patterning problem.
-
Annotating the human genome with Disease Ontology.
-
Antibody Fab-Fc properties outperform titer in predictive models of SIV vaccine-induced protection.
-
Application of a miniature biochip using the molecular beacon probe in breast cancer gene BRCA1 detection.
-
Application of single-cell RNA sequencing in optimizing a combinatorial therapeutic strategy in metastatic renal cell carcinoma.
-
Applications of a rat multiple tissue gene expression data set.
-
Applying family analyses to electronic health records to facilitate genetic research.
-
Artifactual frame-shift p53 mutation at codon 249 detected with the Cyclist DNA sequencing method.
-
Ashbya Genome Database 3.0: a cross-species genome and transcriptome browser for yeast biologists.
-
Assessment of Genome-Wide Protein Function Classification for Drosophila melanogaster
-
Assessment of LD matrix measures for the analysis of biological pathway association.
-
Assessment of protein dynamics and DNA repair following generation of DNA double-strand breaks at defined genomic sites.
-
Association of calmodulin and smooth muscle myosin light chain kinase: application of a label selection technique with trace acetylated calmodulin.
-
Association test using Copy Number Profile Curves (CONCUR) enhances power in rare copy number variant analysis.
-
Attachment of gold nanoparticles to glassy carbon electrode and its application for the direct electrochemistry and electrocatalytic behavior of hemoglobin.
-
Author Correction: Highly recurrent CBS epimutations in gastric cancer CpG island methylator phenotypes and inflammation.
-
AutoCSA, an algorithm for high throughput DNA sequence variant detection in cancer genomes.
-
Automated annotation of gene expression image sequences via non-parametric factor analysis and conditional random fields.
-
Automated constraint-based nucleotide sequence selection for DNA computation.
-
Automated identification of protein-ligand interaction features using Inductive Logic Programming: a hexose binding case study.
-
Automatic annotation of spatial expression patterns via sparse Bayesian factor models.
-
Avianbase: a community resource for bird genomics.
-
BBK* (Branch and Bound Over K*): A Provable and Efficient Ensemble-Based Protein Design Algorithm to Optimize Stability and Binding Affinity Over Large Sequence Spaces.
-
BWM*: A Novel, Provable, Ensemble-based Dynamic Programming Algorithm for Sparse Approximations of Computational Protein Design.
-
Bacterial artificial chromosome cloning and mapping of a 630-kb human extrachromosomal structure.
-
Bacterial flavohemoglobin: a molecular tool to probe mammalian nitric oxide biology.
-
Bacterial infection remodels the DNA methylation landscape of human dendritic cells.
-
Bacterial temporal dynamics enable optimal design of antibiotic treatment.
-
Balancing selection and trans-specific polymorphisms.
-
Bang-bang control of feeding: Role of hypothalamic and satiety signals
-
Barriers to adopting a healthy lifestyle: insight from postpartum women.
-
BayFish: Bayesian inference of transcription dynamics from population snapshots of single-molecule RNA FISH in single cells.
-
Bayesian analysis of signaling networks governing embryonic stem cell fate decisions.
-
Bayesian consensus clustering.
-
Bayesian estimation of genetic regulatory effects in high-throughput reporter assays.
-
Bayesian estimation of the number of inversions in the history of two chromosomes.
-
Bayesian inference for genomic data integration reduces misclassification rate in predicting protein-protein interactions.
-
Bayesian inference of the number of factors in gene-expression analysis: application to human virus challenge studies.
-
Bayesian joint analysis of heterogeneous genomics data.
-
Bayesian learning from marginal data in bionetwork models.
-
Bayesian network-response regression.
-
Bayesian segmentation of protein secondary structure.
-
Benchmarking association analyses of continuous exposures with RNA-seq in observational studies.
-
Beyond a 'skeleton': Understanding cellular functions of the cytoskeleton
-
Beyond the E-Value: Stratified Statistics for Protein Domain Prediction.
-
Bimodal liquid biopsy for cancer immunotherapy based on peptide engineering and nanoscale analysis.
-
Binding site graphs: a new graph theoretical framework for prediction of transcription factor binding sites.
-
BioWarehouse: a bioinformatics database warehouse toolkit.
-
Bioplasmonic calligraphy for multiplexed label-free biodetection.
-
Biosensor system for continuous monitoring of organophosphate aerosols.
-
Biotinylated tags for recovery and characterization of ribonucleoprotein complexes.
-
Block-diagonal discriminant analysis and its bias-corrected rules.
-
Bone-associated gene evolution and the origin of flight in birds.
-
Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer.
-
Building pathway clusters from Random Forests classification using class votes.
-
CANEapp: a user-friendly application for automated next generation transcriptomic data analysis.
-
CONSTAX2: Improved taxonomic classification of environmental DNA markers.
-
COVID19 antibody detection using lateral flow assay tests in a cohort of convalescent plasma donors.
-
CPAG: software for leveraging pleiotropy in GWAS to reveal similarity between human traits links plasma fatty acids and intestinal inflammation.
-
CPS analysis: self-contained validation of biomedical data clustering.
-
Callipyge mutation affects gene expression in cis: a potential role for chromatin structure.
-
Can subjective pain be inferred from objective physiological data? Evidence from patients with sickle cell disease.
-
Cancer characterization and feature set extraction by discriminative margin clustering.
-
Capacitive detection of glucose using molecularly imprinted polymers.
-
Carbon sequestration in Synechococcus Sp.: from molecular machines to hierarchical modeling.
-
Causal network inference from gene transcriptional time-series response to glucocorticoids.
-
Cell and extracellular matrix growth theory and its implications for tumorigenesis.
-
Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells.
-
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia.
-
Characterising phase variations in MALDI-TOF data and correcting them by peak alignment.
-
Characterization of Staphylococcus aureus Cas9: a smaller Cas9 for all-in-one adeno-associated virus delivery and paired nickase applications.
-
Characterization of colibactin-associated mutational signature in an Asian oral squamous cell carcinoma and in other mucosal tumor types.
-
Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal.
-
Characterizing disease-specific pathways and their coordination by integrative microarray analysis with application to cancer
-
Characterizing emerging features in cell dynamics using topological data analysis methods
-
Characterizing the relative orientation and dynamics of RNA A-form helices using NMR residual dipolar couplings.
-
Checkpoints couple transcription network oscillator dynamics to cell-cycle progression
-
Checkpoints couple transcription network oscillator dynamics to cell-cycle progression.
-
Chemical carcinogenesis and toxicity models: matching complexity to objectives.
-
Chemical carcinogenesis and toxity models: Matching complexity to objectives
-
Chiral evasion and stereospecific antifolate resistance in Staphylococcus aureus.
-
Chloroplast genome sequence of the moss Tortula ruralis: gene content, polymorphism, and structural arrangement relative to other green plant chloroplast genomes
-
Chromatin accessibility reveals insights into androgen receptor activation and transcriptional specificity.
-
Chromatin conformation and transcriptional activity are permissive regulators of DNA replication initiation in Drosophila.
-
Chromatin signatures of the Drosophila replication program.
-
Classification of polyhedral shapes from individual anisotropically resolved cryo-electron tomography reconstructions.
-
Clustering Deviation Index (CDI): a robust and accurate internal measure for evaluating scRNA-seq data clustering.
-
Clustering gene expression time series data using an infinite Gaussian process mixture model.
-
Collective colony growth is optimized by branching pattern formation in Pseudomonas aeruginosa.
-
Colonoscopy-based colorectal cancer modeling in mice with CRISPR-Cas9 genome editing and organoid transplantation.
-
Combined genotype and haplotype tests for region-based association studies.
-
Combining gene expression, demographic and clinical data in modeling disease: a case study of bipolar disorder and schizophrenia.
-
Community assembly and food web stability
-
Comparative RNA sequencing reveals substantial genetic variation in endangered primates.
-
Comparative analyses of two primate species diverged by more than 60 million years show different rates but similar distribution of genome-wide UV repair events.
-
Comparative and functional genomics provide insights into the pathogenicity of dermatophytic fungi.
-
Comparative genome analysis of Vibrio vulnificus, a marine pathogen.
-
Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution.
-
Comparative genomic analysis of fungal genomes reveals intron-rich ancestors.
-
Comparative genomics applied to Mucor species with different lifestyles.
-
Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma.
-
Comparative genomics reveals molecular features unique to the songbird lineage.
-
Comparative genomics search for losses of long-established genes on the human lineage.
-
Comparative hybridization reveals extensive genome variation in the AIDS-associated pathogen Cryptococcus neoformans.
-
Comparing reference-based RNA-Seq mapping methods for non-human primate data.
-
Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis.
-
Comparison of colloidal gold electrode fabrication methods: the preparation of a horseradish peroxidase enzyme electrode.
-
Competing G protein-coupled receptor kinases balance G protein and β-arrestin signaling.
-
Competition for DNA binding between paralogous transcription factors determines their genomic occupancy and regulatory functions.
-
Complete vertebrate mitogenomes reveal widespread repeats and gene duplications.
-
Complex-trait analysis in plants.
-
Complexity reduction in context-dependent DNA substitution models.
-
Component-wise gradient boosting and false discovery control in survival analysis with high-dimensional covariates.
-
Comprehensive long-span paired-end-tag mapping reveals characteristic patterns of structural variations in epithelial cancer genomes.
-
Computation of mutual information from Hidden Markov Models.
-
Computation of steady-state probability distributions in stochastic models of cellular networks.
-
Computational Causal Modeling of the Dynamic Biomarker Cascade in Alzheimer's Disease.
-
Computational analysis of core promoters in the Drosophila genome.
-
Computational and experimental identification of novel human imprinted genes.
-
Computational design of protein antigens that interact with the CDR H3 loop of HIV broadly neutralizing antibody 2F5.
-
Computational inference of neural information flow networks.
-
Computational tools for assessing gene therapy under branching process models of mutation.
-
Computing and Graphing Probability Values of Pearson Distributions: A
SAS/IML Macro
-
Computing and graphing probability values of pearson distributions: a SAS/IML macro.
-
Computing van der Waals energies in the context of the rotamer approximation.
-
Conservation of dynamic characteristics of transcriptional regulatory elements in periodic biological processes.
-
Conservation, duplication, and loss of the Tor signaling pathway in the fungal kingdom.
-
Constructal law: pleasure, golden ratio, animal locomotion and the design of pedestrian evacuation: comment on "The emergence of design in pedestrian dynamics: locomotion, self-organization, walking paths and the constructal law" by A. Miguel.
-
Controlling the spread of COVID-19 on college campuses.
-
Convergent and divergent evolution of genomic imprinting in the marsupial Monodelphis domestica.
-
Cooperation between Polycomb and androgen receptor during oncogenic transformation
-
Coordinated posttranscriptional mRNA population dynamics during T-cell activation.
-
Coping with viral diversity in HIV vaccine design: A response to Nickle et al. [1]
-
Coping with viral diversity in HIV vaccine design: a response to Nickle et al.
-
Copy number variation contributes to cryptic genetic variation in outbreak lineages of Cryptococcus gattii from the North American Pacific Northwest.
-
Correcting signal biases and detecting regulatory elements in STARR-seq data.
-
Correction to: Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera stricta.
-
Correction to: DNA copy number evolution in Drosophila cell lines.
-
Correction: Bang-Bang Control of Feeding: Role of Hypothalamic and Satiety Signals
-
Correction: Path-level interpretation of Gaussian graphical models using the pair-path subscore.
-
Corrigendum: Detecting differential copy number variation between groups of samples.
-
Coupling spatial segregation with synthetic circuits to control bacterial survival.
-
Cover Image, Volume 84, Issue 9
-
Crystal structure of YbaB from Haemophilus influenzae (HI0442), a protein of unknown function coexpressed with the recombinational DNA repair protein RecR.
-
Crystal structure of YbaK protein from Haemophilus influenzae (HI1434) at 1.8 A resolution: functional implications.
-
Crystal structure of YecO from Haemophilus influenzae (HI0319) reveals a methyltransferase fold and a bound S-adenosylhomocysteine.
-
Crystal structure of the YjeE protein from Haemophilus influenzae: a putative Atpase involved in cell wall synthesis.
-
Crystallization of a fragment of human fibronectin: introduction of methionine by site-directed mutagenesis to allow phasing via selenomethionine.
-
Crystallization of the purine salvage enzyme adenine phosphoribosyltransferase
-
Crystallization of the purine salvage enzyme adenine phosphoribosyltransferase.
-
Crystallographic analysis of oxygenated and deoxygenated states of arthropod hemocyanin shows unusual differences.
-
Culture and the Constructal-Law evolution of the human and machine species: comment on "An evolutionary framework for cultural change: selectionism versus communal exchange" by L. Gabora.
-
Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights.
-
CyanoPATH: a knowledgebase of genome-scale functional repertoire for toxic cyanobacterial blooms.
-
CystiHuman: A model of human neurocysticercosis.
-
DIG--a system for gene annotation and functional discovery.
-
DNA copy number evolution in Drosophila cell lines.
-
DNA replication and transcription programs respond to the same chromatin cues.
-
DNase-seq predicts regions of rotational nucleosome stability across diverse human cell types.
-
DOOR: a prokaryotic operon database for genome analyses and functional inference
-
Dating branches on the tree of life using DNA.
-
De Novo Transcriptome Assembly and Development of Novel Microsatellite Markers for the Traditional Chinese Medicinal Herb, Veratrilla baillonii Franch (Gentianaceae).
-
De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae.
-
Decentralized resource allocation to control an epidemic: a game theoretic approach.
-
Deciphering the molecular machinery of stem cells: a look at the neoblast gene expression profile.
-
Decline of nucleotide excision repair capacity in aging Caenorhabditis elegans.
-
Dependence of paracentric inversion rate on tract length.
-
Dependent competing risks: a stochastic process model.
-
Design and Analysis of Large-Scale Biological Rhythm Studies: A Comparison of Algorithms for Detecting Periodic Signals in Biological Data
-
Design and implementation of high-throughput RNAi screens in cultured Drosophila cells.
-
Design in nature, thermodynamics, and the constructal law: comment on "Life, hierarchy, and the thermodynamic machinery of planet Earth" by A. Kleidon.
-
Detecting differential copy number variation between groups of samples.
-
Detecting differential growth of microbial populations with Gaussian process regression.
-
Detecting separate time scales in genetic expression data.
-
Detection and identification of bacteria using antibiotic susceptibility and a multi-array electrochemical sensor with pattern recognition.
-
Detection of hormesis effect in longevity: simulation approach for heterogeneous population.
-
Developing a synthetic psychosocial stress measure and harmonizing CVD-risk data: a way forward to GxE meta- and mega-analyses.
-
Development and application of a phylogenomic toolkit: resolving the evolutionary history of Madagascar's lemurs.
-
Development of human protein reference database as an initial platform for approaching systems biology in humans.
-
Developmental control of gene copy number by repression of replication initiation and fork progression.
-
Developmental control of the DNA replication and transcription programs.
-
Developmental roles of pufferfish Hox clusters and genome evolution in ray-fin fish.
-
Different methods of sample preparation influence sensitivity of Mycobacterium tuberculosis and Borrelia burgdorferi PCR.
-
Different methods of sample preparation influence sensitivity of mycobacterium tuberculosis and borrelia burgdorferi PCR
-
Differential DNA methylation with age displays both common and dynamic features across human tissues that are influenced by CpG landscape.
-
Differential pathlength factor for diffuse photon scattering through tissue by a pulse-response method.
-
Differential screening of a subtracted cDNA library: a method to search for genes preferentially expressed in multiple tissues.
-
Differentially labeled mutant oligonucleotides for analysis of protein-DNA interactions.
-
Digital atlasing and standardization in the mouse brain.
-
Digital image analysis for rapid quantification of total RNA and cDNA for SMART-PCR.
-
Direct electrochemistry of hemoglobin in egg-phosphatidylcholine films and its catalysis to H(2)O(2).
-
Discovery of MLL1 binding units, their localization to CpG Islands, and their potential function in mitotic chromatin.
-
Dissecting the regulatory architecture of gene expression QTLs.
-
Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver.
-
Distinct polyadenylation landscapes of diverse human tissues revealed by a modified PA-seq strategy.
-
Distinguishing direct versus indirect transcription factor-DNA interactions.
-
Does an offer for a free on-line continuing medical education (CME) activity increase physician survey response rate? A randomized trial.
-
Domain prediction with probabilistic directional context.
-
Domain-oriented edge-based alignment of protein interaction networks.
-
Drivers of Inter-individual Variation in Dengue Viral Load Dynamics.
-
Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading.
-
Drug detoxification dynamics explain the postantibiotic effect.
-
Dynamic DNA methylation across diverse human cell lines and tissues.
-
Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration.
-
E-Pedigrees: a large-scale automatic family pedigree prediction application.
-
EchinoDB, an application for comparative transcriptomics of deeply-sampled clades of echinoderms.
-
Effect of dimensionality on Lotka-Volterra predator-prey dynamics: Individual based simulation results
-
Effects of ligand binding on the mechanical properties of ankyrin repeat protein gankyrin.
-
Effects of sequence variation on differential allelic transcription factor occupancy and gene expression.
-
Efficiency, selectivity, and robustness of nucleocytoplasmic transport.
-
Efficiency, selectivity, and robustness of nucleocytoplasmic transport.
-
Efficient decoding algorithms for generalized hidden Markov model gene finders
-
Efficient estimation of grouped survival models.
-
Efficient implementation of a generalized pair hidden Markov model for comparative gene finding
-
Embracing the complexity of genomic data for personalized medicine.
-
Emotion and autobiographical memory: considerations from posttraumatic stress disorder.
-
Enabling functional genomics with genome engineering.
-
Encoding of naturalistic stimuli by local field potential spectra in networks of excitatory and inhibitory neurons.
-
Engineering key components in a synthetic eukaryotic signal transduction pathway.
-
Enhanced protein fold recognition through a novel data integration approach.
-
Enhancement of transport selectivity through nano-channels by non-specific competition.
-
Enhancement of transport selectivity through nano-channels by non-specific competition.
-
Epigenetic assimilation in the aging human brain.
-
Epigenetic suppression of the TGF-beta pathway revealed by transcriptome profiling in ovarian cancer.
-
Erratum to: Host lifestyle affects human microbiota on daily timescales.
-
Erratum: A high-density integrated genetic linkage and radiation hybrid map of the laboratory rat (Genome Research (1999) 9, (AP1-AP8))
-
Erratum: Applications of a rat multiple tissue gene expression data set (Genome Research (2004) vol. 14 (742-749))
-
Erratum: Bayesian analysis of signaling networks embryonic stem cell fate decisions (Bioinformatics (2005) vol. 21 (741-753))
-
Erratum: Integrating genetic and gene expression evidence into genome-wide association analysis of gene sets (Genome Research (2012) 22 (386-397))
-
Erratum: RIP-Chip: The isolation and identification of mRNAs, microRNAS and protein components of ribonucleoprotein complexes from cell extracts (Nature Protocols (2006) vol. 1 (302-307) 10.1038/nprot.2006.47)
-
Ertapenem for treatment of osteomyelitis: a case series.
-
Escape from homeostasis.
-
Establishing a framework for privacy-preserving record linkage among electronic health record and administrative claims databases within PCORnet®, the National Patient-Centered Clinical Research Network.
-
Establishing reporting standards for metabolomic and metabonomic studies: a call for participation.
-
Estimating Tumor Growth Rates In Vivo.
-
Estimating genomic coexpression networks using first-order conditional independence.
-
Estimating relative changes of metabolic fluxes.
-
Estimating the Probability of Polyreactive Antibodies 4E10 and 2F5 Disabling a gp41 Trimer after T Cell-HIV Adhesion
-
Estimating the probability of polyreactive antibodies 4E10 and 2F5 disabling a gp41 trimer after T cell-HIV adhesion.
-
Estimation and prediction with HIV-treatment interruption data.
-
Estrogen-mediated epigenetic repression of large chromosomal regions through DNA looping.
-
Ethical challenges in genotype-driven research recruitment.
-
Evaluating Spatial Interaction Models for Regional Mobility in Sub-Saharan Africa.
-
Evaluating cell-surface expression and measuring activation of mammalian odorant receptors in heterologous cells.
-
Evaluating functional network inference using simulations of complex biological systems.
-
Evaluating the quality of NMR structures by local density of protons.
-
Evaluation and optimisation of indel detection workflows for ion torrent sequencing of the BRCA1 and BRCA2 genes.
-
Evaluation of EEG features in decoding individual finger movements from one hand.
-
Evaluation of multiple models to distinguish closely related forms of disease using DNA microarray data: an application to multiple myeloma.
-
Evidence for GC-biased gene conversion as a driver of between-lineage differences in avian base composition.
-
Evidence-ranked motif identification.
-
Evolution of dispersal distance.
-
Evolution, physics, and education.
-
Evolutionary design on a budget: robustness and optimality of bacteriophage T7.
-
Expanding the diversity of DNA base modifications with N⁶-methyldeoxyadenosine.
-
Experimental and pan-cancer genome analyses reveal widespread contribution of acrylamide exposure to carcinogenesis in humans.
-
Experimental guidance for discovering genetic networks through hypothesis reduction on time series.
-
Explant culture of adult zebrafish hearts for epicardial regeneration studies.
-
Explicit equilibrium modeling of transcription-factor binding and gene regulation.
-
Exploiting expression patterns across multiple tissues to map expression quantitative trait loci.
-
Expressed sequence tag analysis in Cycas, the most primitive living seed plant.
-
Expression Divergence of Duplicate Genes in the Protein Kinase Superfamily in Pacific Oyster.
-
Extending assembly of short DNA sequences to handle error.
-
Extension of the SIMLA package for generating pedigrees with complex inheritance patterns: Environmental covariates, gene-gene and gene-environment interaction
-
Extension of the SIMLA package for generating pedigrees with complex inheritance patterns: environmental covariates, gene-gene and gene-environment interaction.
-
Extraction and comparison of gene expression patterns from 2D RNA in situ hybridization images.
-
Extrapolating weak selection in evolutionary games.
-
Extrema-weighted feature extraction for functional data.
-
F-Seq: a feature density estimator for high-throughput sequence tags.
-
Fabrication of an autoclavable one-way valve for venting fermentation gases.
-
Fabrication of nitric oxide-releasing polyurethane glucose sensor membranes.
-
False gene and chromosome losses in genome assemblies caused by GC content variation and repeats.
-
Familial and sporadic idiopathic pulmonary fibrosis: making the diagnosis from peripheral blood.
-
Fast ion-exchange membrane purification of a microsomal protein.
-
Fast molecular shape matching using contact maps.
-
Faster algorithms for optimal multiple sequence alignment based on pairwise comparisons.
-
Femtomolar sensitivity using a channel-etched thin film waveguide fluoroimmunosensor.
-
Field-induced forces at dielectric interfaces as a possible mechanism of RF hearing effects.
-
First somatic mutation of E2F1 in a critical DNA binding residue discovered in well-differentiated papillary mesothelioma of the peritoneum.
-
Flexible use of high-density oligonucleotide arrays for single-nucleotide polymorphism discovery and validation.
-
Flow: Statistics, visualization and informatics for flow cytometry.
-
Fluorescence in situ hybridization method for measuring transfection efficiency.
-
Focused goodness of fit tests for gene set analyses.
-
Freedom and evolution in the dynamics of social systems.
-
From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations.
-
From spiking neuron models to linear-nonlinear models.
-
From structure to function: YrbI from Haemophilus influenzae (HI1679) is a phosphatase.
-
Fully printed prothrombin time sensor for point-of-care testing.
-
Functional Annotation Signatures of Disease Susceptibility Loci Improve SNP Association Analysis
-
Functional analysis of novel SNPs and mutations in human and mouse genomes.
-
Functional annotation signatures of disease susceptibility loci improve SNP association analysis
-
GWAS analyzer: integrating genotype, phenotype and public annotation data for genome-wide association study analysis.
-
Gateway-compatible tissue-specific vectors for plant transformation.
-
Gaze-dependent evidence accumulation predicts multi-alternative risky choice behaviour.
-
GenBlastA: enabling BLAST to identify homologous gene sequences.
-
Gene expression and adaptive noncoding changes during human evolution.
-
Gene expression profiles in rat brain disclose CNS signature genes and regional patterns of functional specialisation
-
Gene expression throughout a vertebrate's embryogenesis.
-
Gene loss, adaptive evolution and the co-evolution of plumage coloration genes with opsins in birds.
-
Gene prediction and verification in a compact genome with numerous small introns.
-
Gene selection using iterative feature elimination random forests for survival outcomes.
-
Gene-expression profiling of the response of peripheral blood mononuclear cells and melanoma metastases to systemic IL-2 administration.
-
Generation and customization of biosynthetic excitable tissues for electrophysiological studies and cell-based therapies.
-
Generation of full-length cDNA libraries enriched for differentially expressed genes for functional genomics.
-
Generation of orthotopic and heterotopic human pancreatic cancer xenografts in immunodeficient mice.
-
Genetic algorithms applied to multi-class prediction for the analysis of gene expression data
-
Genetic engineering of a single-chain antibody fragment for surface immobilization in an optical biosensor.
-
Genetic network identification using convex programming.
-
Genetic signatures in the envelope glycoproteins of HIV-1 that associate with broadly neutralizing antibodies.
-
Genistein and bisphenol A exposure cause estrogen receptor 1 to bind thousands of sites in a cell type-specific manner.
-
Genome accessibility is widely preserved and locally modulated during mitosis.
-
Genome annotation assessment in Drosophila melanogaster.
-
Genome editing: the end of the beginning.
-
Genome mapping by fluorescent fingerprinting.
-
Genome sequence of Blochmannia pennsylvanicus indicates parallel evolutionary trends among bacterial mutualists of insects.
-
Genome structure of a Saccharomyces cerevisiae strain widely used in bioethanol production.
-
Genome-scale mutational signatures of aflatoxin in cells, mice, and human tumors.
-
Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types.
-
Genome-wide identification and predictive modeling of tissue-specific alternative polyadenylation.
-
Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS).
-
Genome-wide prediction of imprinted murine genes.
-
Genome-wide search for miRNA-target interactions in Arabidopsis thaliana with an integrated approach.
-
Genome-wide specificity of DNA binding, gene regulation, and chromatin remodeling by TALE- and CRISPR/Cas9-based transcriptional activators.
-
Genomic acquisition of a capsular polysaccharide virulence cluster by non-pathogenic Burkholderia isolates.
-
Genomic and physiological responses to strong selective pressure during late organogenesis: few gene expression changes found despite striking morphological differences.
-
Genomic approaches for understanding the genetics of complex disease.
-
Genomic determination of the glucocorticoid response reveals unexpected mechanisms of gene regulation.
-
Genomic distribution of CHD7 on chromatin tracks H3K4 methylation patterns.
-
Genomic erosion and extensive horizontal gene transfer in gut-associated Acetobacteraceae.
-
Genomic resources for the endangered Hawaiian honeycreepers.
-
Genomic signatures of near-extinction and rebirth of the crested ibis and other endangered bird species.
-
Genomic sweeping for hypermethylated genes.
-
Genomic variation within alpha satellite DNA influences centromere location on human chromosomes with metastable epialleles.
-
Gfastats: conversion, evaluation and manipulation of genome sequences using assembly graphs.
-
Global gene expression of Prochlorococcus ecotypes in response to changes in nitrogen availability.
-
Glucocorticoid receptor recruits to enhancers and drives activation by motif-directed binding.
-
Gradient lasso for Cox proportional hazards model.
-
HIV infection reveals widespread expansion of novel centromeric human endogenous retroviruses.
-
HPV clearance and the neglected role of stochasticity.
-
Helix lap-joints as ion-binding sites: DNA-binding motifs and Ca-binding "EF hands" are related by charge and sequence reversal.
-
Heterochromatic sequences in a Drosophila whole-genome shotgun assembly.
-
Heterogeneous polymerase fidelity and mismatch repair bias genome variation and composition.
-
Hierarchical Bayesian mixture modelling for antigen-specific T-cell subtyping in combinatorially encoded flow cytometry studies.
-
Hierarchical modeling for rare event detection and cell subset alignment across flow cytometry samples.
-
High heritability of metabolomic profiles in families burdened with premature cardiovascular disease.
-
High prevalence of hypertension and cardiovascular disease risk factors among medical students at Makerere University College of Health Sciences, Kampala, Uganda.
-
High-depth sequencing of over 750 genes supports linear progression of primary tumors and metastases in most patients with liver-limited metastatic colorectal cancer.
-
High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis.
-
High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells.
-
High-resolution mapping of open chromatin in the rice genome.
-
High-throughput genome sequencing of lichenizing fungi to assess gene loss in the ammonium transporter/ammonia permease gene family.
-
High-throughput genotyping with single nucleotide polymorphisms.
-
High-throughput interpretation of gene structure changes in human and nonhuman resequencing data, using ACE.
-
High-throughput phenotyping of multicellular organisms: finding the link between genotype and phenotype.
-
Highly active zinc-finger nucleases by extended modular assembly.
-
Highly recurrent CBS epimutations in gastric cancer CpG island methylator phenotypes and inflammation.
-
Homeostasis Despite Instability
-
Homeostatic mechanisms in dopamine synthesis and release: a mathematical model.
-
Host lifestyle affects human microbiota on daily timescales.
-
How accurately can we control the FDR in analyzing microarray data?
-
How well do reduced models capture the dynamics in models of interacting neurons?
-
Human and mouse alpha-synuclein genes: comparative genomic sequence analysis and identification of a novel gene regulatory element.
-
Human cardiac cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants.
-
Human evolution is biological & technological evolution.
-
Human gamma-satellite DNA maintains open chromatin structure and protects a transgene from epigenetic silencing.
-
Human genomic regions with exceptionally high levels of population differentiation identified from 911 whole-genome sequences.
-
Human sterile alpha motif domain 9, a novel gene identified as down-regulated in aggressive fibromatosis, is absent in the mouse.
-
Hybrid Statistical and Mechanistic Mathematical Model Guides Mobile Health Intervention for Chronic Pain.
-
Hydrogen peroxide biosensor based on microperoxidase-11 entrapped in lipid membrane.
-
IMAGE: high-powered detection of genetic effects on DNA methylation using integrated methylation QTL mapping and allele-specific analysis.
-
Identification and utilization of arbitrary correlations in models of recombination signal sequences.
-
Identification of co-regulated transcripts affecting male body size in Drosophila.
-
Identification of key concepts in biomedical literature using a modified Markov heuristic
-
Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus.
-
Identification of osteopontin-dependent signaling pathways in a mouse model of human breast cancer.
-
Identification of the single base change causing the callipyge muscle hypertrophy phenotype, the only known example of polar overdominance in mammals.
-
Identifying branch-specific positive selection throughout the regulatory genome using an appropriate proxy neutral.
-
Identifying determinants of persistent MRSA bacteremia using mathematical modeling.
-
Identifying patterns of DNA for tumor diagnosis using capillary electrophoresis-amplified fragment length polymorphism (CE-AFLP) screening
-
Identifying potential tumor markers and antigens by database mining and rapid expression screening.
-
Impact of maternal breast cancer on school-aged children in Saudi Arabia.
-
Implementation of machine learning in the clinic: challenges and lessons in prospective deployment from the System for High Intensity EvaLuation During Radiation Therapy (SHIELD-RT) randomized controlled study.
-
Implications of the first complete human genome assembly.
-
Importance sampling for the infinite sites model.
-
Improved data sets and evaluation methods for the automatic prediction of DNA-binding proteins.
-
Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching.
-
Improved transcript isoform discovery using ORF graphs.
-
Improving peptide-MHC class I binding prediction for unbalanced datasets.
-
Improving the modeling of disease data from the government surveillance system: a case study on malaria in the Brazilian Amazon.
-
In silico experimentation with a model of hepatic mitochondrial folate metabolism.
-
In vivo optical molecular imaging and analysis in mice using dorsal window chamber models applied to hypoxia, vasculature and fluorescent reporters.
-
In-depth characterization of the cisplatin mutational signature in human cell lines and in esophageal and liver tumors.
-
Incorporating Nearest-Neighbor Site Dependence into Protein Evolution Models.
-
Infectious pathogen detection arrays: viral detection in cell lines and postmortem brain tissue.
-
Inferring gene expression from ribosomal promoter sequences, a crowdsourcing approach.
-
Informative priors based on transcription factor structural class improve de novo motif discovery.
-
Integrated detection of natural antisense transcripts using strand-specific RNA sequencing data.
-
Integrated functional networks of process, tissue, and developmental stage specific interactions in Arabidopsis thaliana.
-
Integrated in silico and experimental discovery of trimeric peptide ligands targeting Butyrylcholinesterase.
-
Integrated proteomic and transcriptomic profiling of mouse lung development and Nmyc target genes.
-
Integrating genetic and gene expression evidence into genome-wide association analysis of gene sets.
-
Integrating statistical pair potentials into protein complex prediction.
-
Integrative Pathway Analysis Using Graph-Based Learning with Applications to TCGA Colon and Ovarian Data.
-
Integrative analyses reveal signaling pathways underlying familial breast cancer susceptibility.
-
Integrative pathway analysis using Graph-Based learning with applications to TCGA colon and ovarian data
-
Interpolated markov chains for eukaryotic promoter recognition.
-
JIGSAW, GeneZilla, and GlimmerHMM: puzzling out the features of human genes in the ENCODE regions
-
Joint classifier and feature optimization for comprehensive cancer diagnosis using gene expression data.
-
Joint eQTL assessment of whole blood and dura mater tissue from individuals with Chiari type I malformation.
-
Joint modeling of DNA sequence and physical properties to improve eukaryotic promoter recognition.
-
Key mutations stabilize antigen-binding conformation during affinity maturation of a broadly neutralizing influenza antibody lineage
-
Key mutations stabilize antigen-binding conformation during affinity maturation of a broadly neutralizing influenza antibody lineage.
-
Kilohertz waveforms optimized to produce closed-state Na+ channel inactivation eliminate onset response in nerve conduction block.
-
KinImmerse: Macromolecular VR for NMR ensembles.
-
Large-scale identification and analysis of genome-wide single-nucleotide polymorphisms for mapping in Arabidopsis thaliana.
-
Latent factor analysis to discover pathway-associated putative segmental aneuploidies in human cancers.
-
Learning phenotype densities conditional on many interacting predictors.
-
Learning protein-DNA interaction landscapes by integrating experimental data through computational models.
-
Less is more: compact genomes pay dividends.
-
Lessons learned through piloting a community-based SMS referral system for common mental health disorders used by female community health volunteers in rural Nepal.
-
Leveraging chromatin accessibility for transcriptional regulatory network inference in T Helper 17 Cells.
-
Leveraging prior information to detect causal variants via multi-variant regression.
-
Limits of epidemic prediction using SIR models.
-
Linear algebraic transformations of the bidomain equations: implications for numerical methods.
-
Linear latent structure analysis and modelling of multiple categorical variables
-
Linking the dynamics of chromatin occupancy and transcription with predictive models.
-
Lipid membrane immobilized horseradish peroxidase biosensor for amperometric determination of hydrogen peroxide.
-
Live-cell confocal microscopy and quantitative 4D image analysis of anchor-cell invasion through the basement membrane in Caenorhabditis elegans.
-
Local nucleosome dynamics and eviction following a double-strand break are reversible by NHEJ-mediated repair in the absence of DNA replication.
-
Localized delivery of DNA to the cells by viral collagen-loaded silica colloidal crystals.
-
Low frequency of paleoviral infiltration across the avian phylogeny.
-
MAGI: a Node. js web service for fast MicroRNA-Seq Analysis in a GPU Infrastructure
-
MATCHER: manifold alignment reveals correspondence between single cell transcriptome and epigenome dynamics.
-
MPDA: microarray pooled DNA analyzer.
-
Magellan: a web based system for the integrated analysis of heterogeneous biological data and annotations; application to DNA copy number and expression data in ovarian cancer.
-
Magnetic separation to concentrate the estrogen receptor from adipose tissue for western analysis.
-
Managing Multi-center Flow Cytometry Data for Immune Monitoring.
-
Mapping eQTL by leveraging multiple tissues and DNA methylation.
-
Mapping nucleosome positions using DNase-seq.
-
Mapping parameter spaces of biological switches.
-
Mapping the complexity of transcription control in higher eukaryotes.
-
Massively parallel quantification of the regulatory effects of noncoding genetic variation in a human cohort.
-
Matching isotopic distributions from metabolically labeled samples.
-
Mathematical analysis of the regulation of competing methyltransferases.
-
Mathematical model insights into arsenic detoxification
-
Mathematical model insights into arsenic detoxification.
-
Mathematical modeling of perifusion cell culture experiments on GnRH signaling.
-
Mathematical modeling of the Phoenix Rising pathway.
-
Mathematical modeling of the effects of glutathione on arsenic methylation.
-
Maturation of GABAergic inhibition promotes strengthening of temporally coherent inputs among convergent pathways.
-
Maximization of signal derived from cDNA microarrays.
-
Measuring and mitigating PCR bias in microbiota datasets.
-
Medical cost trajectories and onsets of cancer and noncancer diseases in US elderly population.
-
Medical student opinions on character development in medical education: a national survey.
-
Memory capacity of networks with stochastic binary synapses.
-
Memory maintenance in synapses with calcium-based plasticity in the presence of background activity.
-
Mesoscopic hydrogel molding to control the 3D geometry of bioartificial muscle tissues.
-
Metabolic pattern formation in the tumor microenvironment.
-
Metabolic rewiring drives resistance to targeted cancer therapy.
-
Metabolomics Standards Workshop and the development of international standards for reporting metabolomics experimental results.
-
Metabomxtr: an R package for mixture-model analysis of non-targeted metabolomics data.
-
Metaprotein expression modeling for label-free quantitative proteomics.
-
Methods for generating and colonizing gnotobiotic zebrafish.
-
Methods for precise sizing, automated binning of alleles, and reduction of error rates in large-scale genotyping using fluorescently labeled dinucleotide markers. FUSION (Finland-U.S. Investigation of NIDDM Genetics) Study Group.
-
Methods for the purification and direct transformation of epithelial progenitor cells from primary human prostate
-
Micro flow bio-molecular computation.
-
Microarray gene expression profiles from mature gonad tissues of Atlantic bluefin tuna, Thunnus thynnus in the Gulf of Mexico.
-
Microbiota modulate transcription in the intestinal epithelium without remodeling the accessible chromatin landscape.
-
Microbiota regulate intestinal epithelial gene expression by suppressing the transcription factor Hepatocyte nuclear factor 4 alpha.
-
Microheterogeneity-induced conduction slowing and wavefront collisions govern macroscopic conduction behavior: A computational and experimental study.
-
Mining hidden knowledge for drug safety assessment: topic modeling of LiverTox as a case study.
-
Mining the Gene Wiki for functional genomic knowledge.
-
Mixture model normalization for non-targeted gas chromatography/mass spectrometry metabolomics data.
-
Mlcoalsim: multilocus coalescent simulations.
-
Modeling an Excitable Biosynthetic Tissue with Inherent Variability for Paired Computational-Experimental Studies.
-
Modeling biological systems using Dynetica--a simulator of dynamic networks.
-
Modeling cancer progression via pathway dependencies.
-
Modeling endocrine control of the pituitary-ovarian axis: androgenic influence and chaotic dynamics.
-
Modeling longitudinal data on health aging and life span
-
Modeling mutant phenotypes and oscillatory dynamics in the \emph{Saccharomyces cerevisiae} cAMP-PKA pathway
-
Modeling the biochemical differences between rabbit muscle and human liver phosphorylase.
-
Modeling the evolution of regulatory elements by simultaneous detection and alignment with phylogenetic pair HMMs.
-
Modelling regulatory pathways in E. coli from time series expression profiles.
-
Modification of a cylindrical bidomain model for cardiac tissue.
-
Modulation of network excitability by persistent activity: how working memory affects the response to incoming stimuli.
-
Molprobity's ultimate rotamer-library distributions for model validation.
-
Molt-dependent transcriptomic analysis of cement proteins in the barnacle Amphibalanus amphitrite.
-
Monitoring protein conformational changes and dynamics using stable-isotope labeling and mass spectrometry.
-
Motif composition, conservation and condition-specificity of single and alternative transcription start sites in the Drosophila genome.
-
Multiple testing for gene sets from microarray experiments.
-
Multiscale computational analysis of Xenopus laevis morphogenesis reveals key insights of systems-level behavior.
-
Myocardial infarction and intramyocardial injection models in swine.
-
Nanopore sequencing of complex genomic rearrangements in yeast reveals mechanisms of repeat-mediated double-strand break repair.
-
Nascent chromatin occupancy profiling reveals locus- and factor-specific chromatin maturation dynamics behind the DNA replication fork.
-
Network-based SNP meta-analysis identifies joint and disjoint genetic features across common human diseases.
-
Neural G0: a quiescent-like state found in neuroepithelial-derived cells and glioma.
-
Neuron's eye view: Inferring features of complex stimuli from neural responses.
-
Neuroprosthetic decoder training as imitation learning
-
New stochastic carcinogenesis model with covariates: an approach involving intracellular barrier mechanisms.
-
New techniques for DNA sequence classification.
-
Next generation distributed computing for cancer research.
-
Next-generation genotyping of hypervariable loci in many individuals of a non-model species: technical and theoretical implications.
-
Noise reduction by diffusional dissipation in a minimal quorum sensing motif.
-
Non-monotonic effects of GABAergic synaptic inputs on neuronal firing.
-
Nonconsensus Protein Binding to Repetitive DNA Sequence Elements Significantly Affects Eukaryotic Genomes.
-
Novel imprinted DLK1/GTL2 domain on human chromosome 14 contains motifs that mimic those implicated in IGF2/H19 regulation.
-
Nutritional control of mRNA isoform expression during developmental arrest and recovery in C. elegans.
-
Observation of dually decoded regions of the human genome using ribosome profiling data.
-
Omitting age-dependent mosquito mortality in malaria models underestimates the effectiveness of insecticide-treated nets.
-
One-carbon metabolism during the menstrual cycle and pregnancy
-
One-carbon metabolism during the menstrual cycle and pregnancy
-
Ontology-guided segmentation and object identification for developmental mouse lung immunofluorescent images.
-
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity.
-
Open source tools and toolkits for bioinformatics: significance, and where are we?
-
Optical aberrations and objective choice in multicolor confocal microscopy.
-
Optimal anti-amyloid-beta therapy for Alzheimer's disease via a personalized mathematical model.
-
Optimal properties of analog perceptrons with excitatory weights.
-
Optimal tuning of bacterial sensing potential.
-
Optimized mixed Markov models for motif identification.
-
Optimized regimen for expression of heat-inducible Cre in mice.
-
Ordinary Differential Equation Models for Adoptive Immunotherapy.
-
Organization and evolution of a gene-rich region of the mouse genome: a 12.7-Mb region deleted in the Del(13)Svea36H mouse.
-
Origin of bistability underlying mammalian cell cycle entry.
-
OrthoClusterDB: an online platform for synteny blocks
-
OrthoClusterDB: an online platform for synteny blocks.
-
Osteoprotegerin in bone metastases: mathematical solution to the puzzle.
-
Outlier detection for multi-network data.
-
PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data.
-
Pairing of competitive and topologically distinct regulatory modules enhances patterned gene expression.
-
Palo: spatially aware color palette optimization for single-cell and spatial data.
-
Parametric modeling of cellular state transitions as measured with flow cytometry.
-
Parametric modeling of cellular state transitions as measured with flow cytometry.
-
Path-level interpretation of Gaussian graphical models using the pair-path subscore.
-
Pathway analysis using random forests classification and regression.
-
Pathway analysis using random forests with bivariate node-split for survival outcomes
-
Pathway analysis using random forests with bivariate node-split for survival outcomes.
-
Patterns of large-scale genomic variation in virulent and avirulent Burkholderia species
-
Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions.
-
Peat-based gnotobiotic plant growth systems for Arabidopsis microbiome research.
-
Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment.
-
Phenotypic signatures arising from unbalanced bacterial growth.
-
Phylogenetic footprint analysis of IGF2 in extant mammals.
-
Phylogenetic simulation of promoter evolution: estimation and modeling of binding site turnover events and assessment of their impact on alignment tools.
-
Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient.
-
Physical maps for genome analysis of serotype A and D strains of the fungal pathogen Cryptococcus neoformans.
-
Polarized monocyte response to cytokine stimulation.
-
Population genomics and the evolution of virulence in the fungal pathogen Cryptococcus neoformans.
-
Positive selection in noncoding genomic regions of vocal learning birds is associated with genes implicated in vocal learning and speech functions in humans.
-
Predicting HLA genotypes using unphased and flanking single-nucleotide polymorphisms in Han Chinese population.
-
Predicting cell-type-specific gene expression from regions of open chromatin.
-
Predicting gene structure changes resulting from genetic variants via exon definition features.
-
Prediction and uncertainty in the analysis of gene expression profiles
-
Prediction and uncertainty in the analysis of gene expression profiles.
-
Prediction of VRC01 neutralization sensitivity by HIV-1 gp160 sequence features.
-
Prediction of a time-to-event trait using genome wide SNP data.
-
Preparation of N-succinimidyl 3-[*I]iodobenzoate: an agent for the indirect radioiodination of proteins.
-
Prevalence and correlates of proteinuria in Kampala, Uganda: a cross-sectional pilot study.
-
Prevalence and risk factors associated with self-reported carpal tunnel syndrome (CTS) among office workers in Kuwait.
-
Prevalence of transcription promoters within archaeal operons and coding sequences.
-
Primer-BLAST: a tool to design target-specific primers for polymerase chain reaction.
-
Principles of microRNA regulation of a human cellular signaling network.
-
Principles that govern competition or co-existence in Rho-GTPase driven polarization.
-
Probabilistic fluorescence-based synapse detection.
-
Probabilistic modelling for estimating gas kinetics and decompression sickness risk in pigs during H2 biochemical decompression.
-
Processing Oscillatory Signals by Incoherent Feedforward Loops.
-
Production of highly potent recombinant siRNAs in Escherichia coli.
-
Profiling the quantitative occupancy of myriad transcription factors across conditions by modeling chromatin accessibility data.
-
Programming stress-induced altruistic death in engineered bacteria.
-
Projected t-SNE for batch correction.
-
Promoter prediction on a genomic scale--the Adh experience.
-
Propagation of fluctuations in biochemical systems, I: linear SSC networks.
-
Propagation of fluctuations in biochemical systems, II: Nonlinear chains.
-
Properties of overlapping genes are conserved across microbial genomes
-
Properties of overlapping genes are conserved across microbial genomes.
-
Prospective health care: the second transformation of medicine.
-
Protein loop closure using orientational restraints from NMR data.
-
Protein-Protein Docking Benchmark 2.0: an update.
-
Pulling the genome in opposite directions to dissect gene networks.
-
Purification and direct transformation of epithelial progenitor cells from primary human prostate.
-
Putative biomarkers for predicting tumor sample purity based on gene expression data.
-
Pyruvate aldolases in chiral carbon-carbon bond formation.
-
Quality control, analysis and secure sharing of Luminex® immunoassay data using the open source LabKey Server platform.
-
Quantification of transcription factor expression from Arabidopsis images.
-
Quantifying gene expression: the importance of being subtle
-
Quantum dots-bienzyme hybrid system for the sensitive determination of glucose.
-
Quantum mechanics simulation of protein dynamics on long timescale.
-
RIP-Chip: the isolation and identification of mRNAs, microRNAs and protein components of ribonucleoprotein complexes from cell extracts.
-
RNA-Seq optimization with eQTL gold standards.
-
RNA-seq Reveals Complicated Transcriptomic Responses to Drought Stress in a Nonmodel Tropic Plant, Bombax ceiba L.
-
RNA: An Expanding View of Function and Evolution.
-
RNABC: forward kinematics to reduce all-atom steric clashes in RNA backbone.
-
Race and sex differences in small-molecule metabolites and metabolic hormones in overweight and obese adults.
-
Random Search in Fluid Flow Aided by Chemotaxis.
-
Random Wiring, Ganglion Cell Mosaics, and the Functional Architecture of the Visual Cortex.
-
Random forests for genetic association studies.
-
Rank order metrics for quantifying the association of sequence features with gene regulation.
-
Rapid 16S ribosomal DNA sequencing from a single colony without DNA extraction or purification.
-
Rapid purification of microtubule motor domain proteins expressed in bacteria.
-
Re-annotation of the woodland strawberry (Fragaria vesca) genome.
-
Recognition of unknown conserved alternatively spliced exons.
-
Reconstructing spatiotemporal gene expression data from partial observations.
-
Reconstructing the temporal ordering of biological samples using microarray data.
-
Reconstruction of cell population dynamics using CFSE.
-
Reconstruction of gross avian genome structure, organization and evolution suggests that the chicken lineage most closely resembles the dinosaur avian ancestor.
-
Refined localization of the cerebral cavernous malformation gene (CCM1) to a 4-cM interval of chromosome 7q contained in a well-defined YAC contig.
-
Regression analysis of multiple protein structures
-
Regression analysis of multiple protein structures.
-
Regulation of signal duration and the statistical dynamics of kinase activation by scaffold proteins.
-
Regulatory network motifs and hotspots of cancer genes in a mammalian cellular signalling network.
-
Reinvestigation of the Saccharomyces cerevisiae genome annotation by comparison to the genome of a related fungus: Ashbya gossypii.
-
Reliability of transcriptional cycles and the yeast cell-cycle oscillator
-
Reliability of transcriptional cycles and the yeast cell-cycle oscillator.
-
Removable cranial windows for long-term imaging in awake mice.
-
Renewal Reward Perspective on Linear Switching Diffusion Systems in Models of Intracellular Transport.
-
Repeated phenotypic changes highlight molecular targets of convergent evolution.
-
Repulsive expansion dynamics in colony growth and gene expression.
-
Response nonlinearities in networks of spiking neurons.
-
Review of current methods, applications, and data management for the bioinformatics analysis of whole exome sequencing.
-
Risk of dislocation using large- vs. small-diameter femoral heads in total hip arthroplasty
-
Risk of dislocation using large- vs. small-diameter femoral heads in total hip arthroplasty.
-
Robust test method for time-course microarray experiments.
-
Robustness of MetaNet graph models: predicting control of urea production in humans.
-
Role of DNA methylation on the association between physical activity and cardiovascular diseases: results from the longitudinal multi-ethnic study of atherosclerosis (MESA) cohort.
-
SAQC: SNP array quality control.
-
SGP-1: prediction and validation of homologous genes based on sequence alignments.
-
SLICER: inferring branched, nonlinear cellular trajectories from single cell RNA-seq data.
-
SNP selection in genome-wide association studies via penalized support vector machine with MAX test.
-
SNPs in Multi-species Conserved Sequences (MCS) as useful markers in association studies: a practical approach.
-
SNPselector: a web tool for selecting SNPs for genetic association studies.
-
SNiPA: an interactive, genetic variant-centered annotation browser.
-
STDP in a bistable synapse model based on CaMKII and associated signaling pathways.
-
SVA: software for annotating and visualizing sequenced human genomes.
-
SVM-based prediction of linear B-cell epitopes using Bayes Feature Extraction.
-
SW1PerS: Sliding windows and 1-persistence scoring; discovering periodicity in gene expression time series data.
-
Sample size calculation for microarray experiments with blocked one-way design.
-
Sample size for FDR-control in microarray data analysis.
-
Screening the human exome: a comparison of whole genome and whole transcriptome sequencing.
-
Search for organising principles: understanding in systems biology.
-
Segregation and mixing in degenerate diffusion in population dynamics
-
Selection and validation of endogenous reference genes using a high throughput approach.
-
Selection of optimal reference genes for normalization in quantitative RT-PCR.
-
Self monitoring of blood glucose - A survey of diabetes UK members with type 2 diabetes who use SMBG
-
Sensing and integration of Erk and PI3K signals by Myc.
-
Sensitive DNA detection and SNP discrimination using ultrabright SERS nanorattles and magnetic beads for malaria diagnostics.
-
Sequence features of DNA binding sites reveal structural class of associated transcription factor.
-
Sequence specificity incompletely defines the genome-wide occupancy of Myc.
-
Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes.
-
Sequential gene profiling of basal cell carcinomas treated with imiquimod in a placebo-controlled study defines the requirements for tissue rejection.
-
Serial dilution curve: a new method for analysis of reverse phase protein array data.
-
Serotonin synthesis, release and reuptake in terminals: a mathematical model.
-
Sex differences in hepatic one-carbon metabolism.
-
SigProfilerMatrixGenerator: a tool for visualizing and exploring patterns of small mutational events.
-
Signal duration and the time scale dependence of signal integration in biochemical pathways.
-
Signatures of neutral evolution in exponentially growing tumors: A theoretical perspective.
-
Simple models of genomic variation in human SNP density.
-
Simulated actin reorganization mediated by motor proteins.
-
Simulation of aggregation in Dictyostelium using the Cell Programming Language.
-
Simultaneous genotyping and species identification using hybridization pattern recognition analysis of generic Mycobacterium DNA arrays.
-
Simultaneous genotyping, gene-expression measurement, and detection of allele-specific expression with oligonucleotide arrays
-
Single-cell imaging of human cancer xenografts using adult immunodeficient zebrafish.
-
Singular value decomposition-based regression identifies activation of endogenous signaling pathways in vivo.
-
Solution structure and function of YndB, an AHSA1 protein from Bacillus subtilis.
-
SpA: web-accessible spectratype analysis: data management, statistical analysis and visualization.
-
Spatial Measures of Genetic Heterogeneity During Carcinogenesis.
-
Spatial Moran models, II: cancer initiation in spatially structured tissue.
-
Spatial preferences of microRNA targets in 3' untranslated regions.
-
Spiracular fluttering decouples oxygen uptake and water loss: a stochastic PDE model of respiratory water loss in insects.
-
SplicerAV: a tool for mining microarray expression data for changes in RNA processing.
-
Spreading of X chromosome inactivation via a hierarchy of defined Polycomb stations.
-
Stability selection for regression-based models of transcription factor-DNA binding specificity.
-
Stabilization of μ-opioid receptor facilitates its cellular translocation and signaling.
-
Stakeholder Perspectives on Public Health Genomics Applications for Sickle Cell Disease: A Methodology for a Human Heredity and Health in Africa (H3Africa) Qualitative Research Study
-
Starvation causes changes in the intestinal transcriptome and microbiome that are reversed upon refeeding.
-
Statistical Viewer: a tool to upload and integrate linkage and association data as plots displayed within the Ensembl genome browser.
-
Statistical analysis of RNA backbone.
-
Statistical analysis of antigen receptor spectratype data.
-
Statistical analysis of variability in TnSeq data across conditions using zero-inflated negative binomial regression.
-
Statistical characterization of protein ensembles.
-
Statistical estimation of statistical mechanical models: helix-coil theory and peptide helicity prediction.
-
Stochastic model for analysis of longitudinal data on aging and mortality.
-
Storage of correlated patterns in standard and bistable Purkinje cell models.
-
Strategies for identifying RNA splicing regulatory motifs and predicting alternative splicing events.
-
Strategies for identifying RNA splicing regulatory motifs and predicting alternative splicing events.
-
Stratified pathway analysis to identify gene sets associated with oral contraceptive use and breast cancer.
-
Stringent comparative sequence analysis reveals SOX10 as a putative inhibitor of glial cell differentiation.
-
Structural adaptation and heterogeneity of normal and tumor microvascular networks.
-
Structural analysis, identification, and design of calcium-binding sites in proteins.
-
Structural and functional analyses of microbial metabolic networks reveal novel insights into genome-scale metabolic fluxes.
-
Structural genomics of Pyrococcus furiosus: X-ray crystallography reveals 3D domain swapping in rubrerythrin.
-
Structure of 2C-methyl-D-erythrol-2,4-cyclodiphosphate synthase from Haemophilus influenzae: activation by conformational transition.
-
Structure of the YibK methyltransferase from Haemophilus influenzae (HI0766): a cofactor bound at a site formed by a knot.
-
Structure validation by Calpha geometry: phi,psi and Cbeta deviation.
-
Structure-based classification of 45 FK506-binding proteins.
-
Studying health histories of cancer: a new model connecting cancer incidence and survival.
-
Substrate recognition by the EcoRI endonuclease.
-
Surface engineering for efficient capture of circulating tumor cells in renal cell carcinoma: From nanoscale analysis to clinical application.
-
Sustained-input switches for transcription factors and microRNAs are central building blocks of eukaryotic gene circuits.
-
Synchronous luminescence: a new detection technique for multiple fluorescent probes used for DNA sequencing.
-
Synthesis of N-succinimidyl 4-[18F]fluorobenzoate, an agent for labeling proteins and peptides with 18F.
-
Synthesis of N-succinimidyl 4-guanidinomethyl-3-[*I]iodobenzoate: a radio-iodination agent for labeling internalizing proteins and peptides.
-
Synthetic lethal analysis of Caenorhabditis elegans posterior embryonic patterning genes identifies conserved genetic interactions.
-
Systematic solution to homo-oligomeric structures determined by NMR.
-
T-BAS: Tree-Based Alignment Selector toolkit for phylogenetic-based placement, alignment downloads and metadata visualization: an example with the Pezizomycotina tree of life.
-
TAMC: A deep-learning approach to predict motif-centric transcriptional factor binding activity based on ATAC-seq profile.
-
Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA).
-
Target domain definition and classification in CASP8.
-
Taste and pheromone perception in mammals and flies.
-
Temporal control of self-organized pattern formation without morphogen gradients in bacteria.
-
Ten Simple Rules for Effective Statistical Practice.
-
Tension and robustness in multitasking cellular networks.
-
The 100-genomes strains, an S. cerevisiae resource that illuminates its natural phenotypic and genotypic variation and emergence as an opportunistic pathogen.
-
The 2006 NESCent Phyloinformatics Hackathon: A Field Report
-
The 2015 Bioinformatics Open Source Conference (BOSC 2015).
-
The Bioinformatics Open Source Conference (BOSC) 2013.
-
The Bioperl toolkit: Perl modules for the life sciences.
-
The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications.
-
The LabBase system for data management in large scale biology research laboratories.
-
The Local Edge Machine: inference of dynamic models of gene regulation.
-
The MetJ regulon in gammaproteobacteria determined by comparative genomics methods.
-
The Multiscale Systems Immunology project: software for cell-based immunological simulation.
-
The Nubeam reference-free approach to analyze metagenomic sequencing reads
-
The PLOS Computational Biology Software Section
-
The Rodin-Ohno hypothesis that two enzyme superfamilies descended from one ancestral gene: an unlikely scenario for the origins of translation that will not be dismissed.
-
The RosR transcription factor is required for gene expression dynamics in response to extreme oxidative stress in a hypersaline-adapted archaeon.
-
The STEDMAN project: biophysical, biochemical and metabolic effects of a behavioral weight loss intervention during weight loss, maintenance, and regain.
-
The Sox10(Dom) mouse: modeling the genetic variation of Waardenburg-Shah (WS4) syndrome.
-
The anatomy of microbial cell state transitions in response to oxygen.
-
The biochemistry of acetaminophen hepatotoxicity and rescue: a mathematical model
-
The birth of the Epitranscriptome: deciphering the function of RNA modifications.
-
The cis-Pro touch-turn: a rare motif preferred at functional sites.
-
The constructal law and the evolution of design in nature.
-
The constructal law makes biology and economics be like physics. Reply to comments on "The constructal law and the evolution of design in nature"
-
The constructal unification of biological and geophysical design.
-
The cyclophilins.
-
The dynamics of T-cell receptor repertoire diversity following thymus transplantation for DiGeorge anomaly.
-
The effect of polar lipids on tear film dynamics.
-
The effect of the organisms' body size and energy reserves in models for population dynamics
-
The effects of health histories on stochastic process models of aging and mortality.
-
The electrical conductivity of phospholipid films as an iodine-sensing mechanism.
-
The emergence of design in pedestrian dynamics: locomotion, self-organization, walking paths and constructal law.
-
The evolutionary dynamics of alpha-satellite.
-
The evolutionary forest algorithm.
-
The histone deacetylase inhibitor trichostatin a decreases lymphangiogenesis by inducing apoptosis and cell cycle arrest via p21-dependent pathways
-
The human olfactory transcriptome.
-
The influence of a consumer-wearable activity tracker on sedentary time and prolonged sedentary bouts: secondary analysis of a randomized controlled trial.
-
The inoculum effect and band-pass bacterial response to periodic antibiotic treatment.
-
The intolerance to functional genetic variation of protein domains predicts the localization of pathogenic mutations within genes.
-
The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata.
-
The location of olfactory receptors within olfactory epithelium is independent of odorant volatility and solubility.
-
The nicotinic acetylcholine receptor gene family of the silkworm, Bombyx mori.
-
The nuclear DEK interactome supports multi-functionality.
-
The origins and genomic diversity of American Civil War Era smallpox vaccine strains.
-
The other 90% of the protein: assessment beyond the Calphas for CASP8 template-based and high-accuracy models.
-
The penultimate rotamer library.
-
The performance of ZDOCK and ZRANK in rounds 6-11 of CAPRI.
-
The quadratic hazard model for analyzing longitudinal data on aging, health, and the life span.
-
The role of local backrub motions in evolved and designed mutations.
-
The statistics of bulk segregant analysis using next generation sequencing.
-
The transport of organelles in axons
-
The use of an inexpensive processing aid device (the Mouse PAD) to facilitate rodent tissue banking.
-
The utility of PacBio circular consensus sequencing for characterizing complex gene families in non-model organisms.
-
The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage
-
The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage.
-
Theoretical and practical advances in genome halving.
-
Thermodynamic analysis of protein-ligand binding interactions in complex biological mixtures using the stability of proteins from rates of oxidation.
-
TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders
-
Topological Data Analysis Approaches to Uncovering the Timing of Ring Structure Onset in Filamentous Networks
-
Transcriptome analysis reveals novel patterning and pigmentation genes underlying Heliconius butterfly wing pattern variation.
-
Transcriptome evidence reveals enhanced autophagy-lysosomal function in centenarians.
-
Transcriptomic profiles of aging in purified human immune cells.
-
Translational Bioinformatics: Past, Present, and Future.
-
Translational bioinformatics in mental health: open access data sources and computational biomarker discovery.
-
Transversions have larger regulatory effects than transitions.
-
UV absorption complicates PCR decontamination.
-
Uncovering the dynamics of a circadian-dopamine model influenced by the light-dark cycle
-
Unequal representation of genetic variation across ancestry groups creates healthcare inequality in the application of precision medicine.
-
Unified thalamic model generates multiple distinct oscillations with state-dependent entrainment by stimulation.
-
Unmasking a role for sex chromosomes in gene silencing.
-
Unprecedented loss of ammonia assimilation capability in a urease-encoding bacterial mutualist.
-
Unsupervised Bayesian linear unmixing of gene expression microarrays.
-
Use of SMART-generated cDNA for gene expression studies in multiple human tumors.
-
Using context to improve protein domain identification.
-
Using dynamic programming to create isotopic distribution maps from mass spectra.
-
Using extremal events to characterize noisy time series.
-
Variation in chromosome copy number influences the virulence of Cryptococcus neoformans and occurs in isolates from AIDS patients.
-
Vertical and horizontal gene transfer tradeoffs direct plasmid fitness.
-
Visualization of cortical, subcortical and deep brain neural circuit dynamics during naturalistic mammalian behavior with head-mounted microscopes and chronically implanted lenses.
-
Wavelet variations on the Shannon sampling theorem.
-
WebGLORE: a web service for Grid LOgistic REgression.
-
What can you do with 0.1x genome coverage? A case study based on a genome survey of the scuttle fly Megaselia scalaris (Phoridae).
-
Whole-epigenome analysis in multiple myeloma reveals DNA hypermethylation of B cell-specific enhancers.
-
Whole-genome comparison of Leu3 binding in vitro and in vivo reveals the importance of nucleosome occupancy in target site selection.
-
Whole-genome reconstruction and mutational signatures in gastric cancer.
-
Widespread false gene gains caused by duplication errors in genome assemblies.
-
X-ray structure of Arabidopsis At1g77680, 12-oxophytodienoate reductase isoform 1.
-
YbiV from Escherichia coli K12 is a HAD phosphatase.
-
ZDOCK and RDOCK performance in CAPRI rounds 3, 4, and 5.
-
ZDOCK server: interactive docking prediction of protein-protein complexes and symmetric multimers.
-
bcSeq: an R package for fast sequence mapping in high-throughput shRNA and CRISPR screens.
-
cis element/transcription factor analysis (cis/TF): a method for discovering transcription factor/cis element relationships.
-
comets (Constrained Optimization of Multistate Energies by Tree Search): A Provable and Efficient Protein Design Algorithm to Optimize Binding Affinity and Specificity with Respect to Sequence.
-
dittoSeq: Universal User-Friendly Single-Cell and Bulk RNA Sequencing Visualization Toolkit.
-
fastJT: An R package for robust and efficient feature selection for machine learning and genome-wide association studies.
-
lambda RNA internal standards quantify sensitivity and amplification efficiency of mammalian gene expression profiling.
-
lumi: a pipeline for processing Illumina microarray.
-
maplet: An extensible R toolbox for modular and reproducible metabolomics pipelines.
-
meaRtools: An R package for the analysis of neuronal networks recorded on microelectrode arrays.
-
miR-27b shapes the presynaptic transcriptome and influences neurotransmission by silencing the polycomb group protein Bmi1.
-
miRNA probe integrated biosensor platform using bimetallic nanostars for amplification-free multiplexed detection of circulating colorectal cancer biomarkers in clinical samples.
-
nuID: a universal naming scheme of oligonucleotides for illumina, affymetrix, and other microarrays.
-
permGPU: Using graphics processing units in RNA microarray association studies.
-
rqt: an R package for gene-level meta-analysis.
-
scDAPA: detection and visualization of dynamic alternative polyadenylation from single cell RNA-seq data.
-
stpm: an R package for stochastic process model.
-
Keywords of People
-
Arnold, Matthias,
Adjunct Associate Professor in the Department of Psychiatry and Behavioral Sciences,
Psychiatry & Behavioral Sciences, Behavioral Medicine & Neurosciences
-
Bhavsar, Nrupen,
Associate Professor in Medicine,
Duke Science & Society
-
Gray, Josh,
House Staff,
Medicine
-
Grimsrud, Paul,
Assistant Professor in Medicine,
Medicine, Endocrinology, Metabolism, and Nutrition
-
Hong, Chuan,
Assistant Professor of Biostatistics & Bioinformatics,
Biostatistics & Bioinformatics
-
Jawahar, Jay,
Student,
Molecular Genetics and Microbiology
-
Kibbe, Warren Alden,
Professor in Biostatistics & Bioinformatics,
Biostatistics & Bioinformatics
-
Mangan, Riley,
Student,
Basic Science Departments
-
Mielko, Zachery,
Student,
Basic Science Departments
-
Pomann, Gina-Maria,
Assistant Professor of Biostatistics & Bioinformatics,
Biostatistics & Bioinformatics
-
Pornmongkolsuk, Ratchanon "RP",
Student,
School of Medicine
-
Schickling, Brandon,
Affiliate,
Medicine, Cardiology
-
Schott, Benjamin,
Student,
Basic Science Departments
-
Swain Lenz, Devi,
Research Scientist,
Biology
-
Tchapyjnikov, Dmitry,
Adjunct Assistant Professor in the Department of Pediatrics,
Pediatrics, Neurology
-
Tenenbaum, Jessica Dale,
Assistant Professor of Biostatistics & Bioinformatics,
Duke Science & Society
-
Wu, Qingrong,
Professor of Radiation Oncology,
Radiation Oncology
-
Yin, Fang-Fang,
Gustavo S. Montana Distinguished Professor of Radiation Oncology,
Radiation Oncology