Scholars@Duke

• Background
• 

  Education, Training, & Certifications

  • D.Sc., Technical University of Munich (Germany) 2016
• 

  Previous Appointments & Affiliations

  • Adjunct Assistant Professor in the Department of Psychiatry and Behavioral Sciences, Psychiatry & Behavioral Sciences, Behavioral Medicine & Neurosciences, Psychiatry & Behavioral Sciences 2018 - 2022
• Expertise
• 

  Subject Headings

  • Bioinformatics
  • Genetics
  • Metabolomics
• Research
• 

  Selected Grants

  • The UCSD Microbiome and Metagenomic Center awarded by University of California - San Diego 2022 - 2023
  • Metabolomic Signatures for Disease Sub-classification and Target Prioritization in AMP-AD awarded by National Institutes of Health 2018 - 2023
  • IU/JAX/Pitt MODEL-AD: Identification and Validation of Metabolomic Signatures of Late-Onset Alzheimer's Disease awarded by Indiana University 2020 - 2022
  • Interdisciplinary Research to Understand the Interplay of Diabetes, Cerebrovascular disease and Alzheimers disease awarded by The Trustees of Columbia University 2015 - 2021
• 

  External Relationships

  • Chymia PsyProtix
  • Helmholtz Zentrum München GmbH
• Publications & Artistic Works
• 

  Selected Publications

  • Academic Articles

    • Amin, Najaf, Jun Liu, Bruno Bonnechere, Siamak MahmoudianDehkordi, Matthias Arnold, Richa Batra, Yu-Jie Chiou, et al. “Interplay of Metabolome and Gut Microbiome in Individuals With Major Depressive Disorder vs Control Individuals.” Jama Psychiatry, April 19, 2023. https://doi.org/10.1001/jamapsychiatry.2023.0685.
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    • Thareja, Gaurav, Aziz Belkadi, Matthias Arnold, Omar M. E. Albagha, Johannes Graumann, Frank Schmidt, Harald Grallert, et al. “Differences and commonalities in the genetic architecture of protein quantitative trait loci in European and Arab populations.” Hum Mol Genet 32, no. 6 (March 6, 2023): 907–16. https://doi.org/10.1093/hmg/ddac243.
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    • Duijn, C. M. van, N. Amin, J. Liu, B. Bonnechere, S. MahmoudianDehkordi, M. Arnold, R. Batra, et al. “Interplay of the human exposome, metabolome and gut microbiome in dementia and major depression.” Alzheimer’S and Dementia 18, no. S4 (December 1, 2022). https://doi.org/10.1002/alz.067261.
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    • Labus, J. S., C. Liu, C. Blach, M. Arnold, R. F. Kaddurah-Daouk, and E. A. Mayer. “Interactions between brain and bile acid ratio profiles predict baseline cognitive status.” Alzheimer’S and Dementia 18, no. S4 (December 1, 2022). https://doi.org/10.1002/alz.067272.
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    • Wang, Tingting, Kevin Huynh, Corey Giles, Natalie A. Mellett, Thy Duong, Anh Nguyen, Wei Ling Florence Lim, et al. “APOE ε2 resilience for Alzheimer's disease is mediated by plasma lipid species: Analysis of three independent cohort studies.” Alzheimers Dement 18, no. 11 (November 2022): 2151–66. https://doi.org/10.1002/alz.12538.
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    • Baloni, Priyanka, Matthias Arnold, Luna Buitrago, Kwangsik Nho, Herman Moreno, Kevin Huynh, Barbara Brauner, et al. “Multi-Omic analyses characterize the ceramide/sphingomyelin pathway as a therapeutic target in Alzheimer's disease.” Commun Biol 5, no. 1 (October 8, 2022): 1074. https://doi.org/10.1038/s42003-022-04011-6.
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    • Batra, Richa, Matthias Arnold, Maria A. Wörheide, Mariet Allen, Xue Wang, Colette Blach, Allan I. Levey, et al. “The landscape of metabolic brain alterations in Alzheimer's disease.” Alzheimers Dement, July 13, 2022. https://doi.org/10.1002/alz.12714.
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    • Milaneschi, Yuri, Matthias Arnold, Gabi Kastenmüller, Siamak Mahmoudian Dehkordi, Ranga R. Krishnan, Boadie W. Dunlop, A John Rush, Brenda W. J. H. Penninx, Rima Kaddurah-Daouk, and Rima Mood Disorders Precision Medicine Consortium (MDPMC). “Genomics-based identification of a potential causal role for acylcarnitine metabolism in depression.” J Affect Disord 307 (June 15, 2022): 254–63. https://doi.org/10.1016/j.jad.2022.03.070.
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    • Cadby, Gemma, Corey Giles, Phillip E. Melton, Kevin Huynh, Natalie A. Mellett, Thy Duong, Anh Nguyen, et al. “Comprehensive genetic analysis of the human lipidome identifies loci associated with lipid homeostasis with links to coronary artery disease.” Nat Commun 13, no. 1 (June 6, 2022): 3124. https://doi.org/10.1038/s41467-022-30875-7.
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    • Horgusluoglu, Emrin, Ryan Neff, Won-Min Song, Minghui Wang, Qian Wang, Matthias Arnold, Jan Krumsiek, et al. “Integrative metabolomics-genomics approach reveals key metabolic pathways and regulators of Alzheimer's disease.” Alzheimers Dement 18, no. 6 (June 2022): 1260–78. https://doi.org/10.1002/alz.12468.
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    • Brydges, Christopher R., Sudeepa Bhattacharyya, Siamak Mahmoudian Dehkordi, Yuri Milaneschi, Brenda Penninx, Rick Jansen, Bruce S. Kristal, et al. “Metabolomic and inflammatory signatures of symptom dimensions in major depression.” Brain Behav Immun 102 (May 2022): 42–52. https://doi.org/10.1016/j.bbi.2022.02.003.
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    • Chetnik, Kelsey, Elisa Benedetti, Daniel P. Gomari, Annalise Schweickart, Richa Batra, Mustafa Buyukozkan, Zeyu Wang, et al. “maplet: an extensible R toolbox for modular and reproducible metabolomics pipelines.” Bioinformatics 38, no. 4 (January 27, 2022): 1168–70. https://doi.org/10.1093/bioinformatics/btab741.
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    • Baloni, P., K. Nho, M. Arnold, G. Louie, A. Kueider-Paisley, A. J. Saykin, K. Ekroos, et al. “Investigating the importance of acylcarnitines in Alzheimer's disease.” Alzheimer’S &Amp; Dementia : The Journal of the Alzheimer’S Association 17 (December 1, 2021): e056647. https://doi.org/10.1002/alz.056647.
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    • Batra, R., M. Arnold, G. Kastenmüller, M. Allen, X. Wang, D. A. Bennett, N. Ertekin-Taner, R. F. Kaddurah-Daouk, and J. Krumsiek. “The metabolic landscape of brain alterations in Alzheimer's disease.” Alzheimer’S &Amp; Dementia : The Journal of the Alzheimer’S Association 17 (December 1, 2021): e054793. https://doi.org/10.1002/alz.054793.
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    • Wörheide, M. A., J. Krumsiek, G. Kastenmüller, R. F. Kaddurah-Daouk, and M. Arnold. “A proof of concept study towards multi-omics-based computational drug repositioning in Alzheimer's disease.” Alzheimer’S &Amp; Dementia : The Journal of the Alzheimer’S Association 17 (December 1, 2021): e056673. https://doi.org/10.1002/alz.056673.
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    • Pietzner, Maik, Eleanor Wheeler, Julia Carrasco-Zanini, Adrian Cortes, Mine Koprulu, Maria A. Wörheide, Erin Oerton, et al. “Mapping the proteo-genomic convergence of human diseases.” Science 374, no. 6569 (November 12, 2021): eabj1541. https://doi.org/10.1126/science.abj1541.
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    • Brydges, Christopher R., Oliver Fiehn, Helen S. Mayberg, Henry Schreiber, Siamak Mahmoudian Dehkordi, Sudeepa Bhattacharyya, Jungho Cha, et al. “Indoxyl sulfate, a gut microbiome-derived uremic toxin, is associated with psychic anxiety and its functional magnetic resonance imaging-based neurologic signature.” Sci Rep 11, no. 1 (October 25, 2021): 21011. https://doi.org/10.1038/s41598-021-99845-1.
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    • Milaneschi, Yuri, Matthias Arnold, Gabi Kastenmüller, Siamak Mahmoudian Dehkordi, Ranga R. Krishnan, Boadie W. Dunlop, A John Rush, Brenda W. J. H. Penninx, and Rima Kaddurah-Daouk. “Genomics-based identification of a potential causal role for acylcarnitine metabolism in depression,” October 19, 2021. https://doi.org/10.1101/2021.10.18.21265157.
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    • Borkowski, Kamil, Ameer Y. Taha, Theresa L. Pedersen, Philip L. De Jager, David A. Bennett, Matthias Arnold, Rima Kaddurah-Daouk, and John W. Newman. “Serum metabolomic biomarkers of perceptual speed in cognitively normal and mildly impaired subjects with fasting state stratification.” Sci Rep 11, no. 1 (September 23, 2021): 18964. https://doi.org/10.1038/s41598-021-98640-2.
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    • MahmoudianDehkordi, Siamak, Ahmed T. Ahmed, Sudeepa Bhattacharyya, Xianlin Han, Rebecca A. Baillie, Matthias Arnold, Michelle K. Skime, et al. “Alterations in acylcarnitines, amines, and lipids inform about the mechanism of action of citalopram/escitalopram in major depression.” Transl Psychiatry 11, no. 1 (March 2, 2021): 153. https://doi.org/10.1038/s41398-020-01097-6.
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    • Wörheide, Maria A., Jan Krumsiek, Gabi Kastenmüller, and Matthias Arnold. “Multi-omics integration in biomedical research - A metabolomics-centric review.” Anal Chim Acta 1141 (January 2, 2021): 144–62. https://doi.org/10.1016/j.aca.2020.10.038.
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    • Baloni, Priyanka, Matthias Arnold, Herman Moreno, Kwangsik Nho, Luna Buitrago, Kevin Huynh, Barbara Brauner, et al. “Multi-Omic Analyses Characterize the Ceramide/Sphingomyelin Pathway as a Therapeutic Target in Alzheimer’s Disease,” 2021. https://doi.org/10.1101/2021.07.16.21260601.
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    • Brydges, Christopher, Sudeepa Bhattacharyya, Siamak Mahmoudian Dehkordi, Yuri Milaneschi, Brenda Penninx, Rick Jansen, Bruce Kristal, et al. “Metabolomic and Inflammatory Signatures of Symptom Dimensions in Major Depression,” 2021. https://doi.org/10.1101/2021.08.05.21261388.
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    • Cadby, Gemma, Corey Giles, Phillip Melton, Kevin Huynh, Natalie Mellett, Thy Duong, Anh Nguyen, et al. “Comprehensive genetic analysis of the human lipidome identifies novel loci controlling lipid homeostasis with links to coronary artery disease,” 2021. https://doi.org/10.1101/2021.08.20.21261814.
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    • Nho, Kwangsik, Alexandra Kueider-Paisley, Matthias Arnold, Siamak MahmoudianDehkordi, Shannon L. Risacher, Gregory Louie, Colette Blach, et al. “Serum metabolites associated with brain amyloid beta deposition, cognition and dementia progression.” Brain Commun 3, no. 3 (2021): fcab139. https://doi.org/10.1093/braincomms/fcab139.
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    • Wörheide, Maria, Jan Krumsiek, Serge Nataf, Kwangsik Nho, Anna Greenwood, Tong Wu, Kevin Huynh, et al. “An Integrated Molecular Atlas of Alzheimer’s Disease,” 2021. https://doi.org/10.1101/2021.09.14.21263565.
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    • Baloni, Priyanka, Cory C. Funk, Jingwen Yan, James T. Yurkovich, Alexandra Kueider-Paisley, Kwangsik Nho, Almut Heinken, et al. “Metabolic Network Analysis Reveals Altered Bile Acid Synthesis and Metabolism in Alzheimer's Disease.” Cell Rep Med 1, no. 8 (November 17, 2020): 100138. https://doi.org/10.1016/j.xcrm.2020.100138.
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    • Huynh, Kevin, Wei Ling Florence Lim, Corey Giles, Kaushala S. Jayawardana, Agus Salim, Natalie A. Mellett, Adam Alexander T. Smith, et al. “Concordant peripheral lipidome signatures in two large clinical studies of Alzheimer's disease.” Nat Commun 11, no. 1 (November 10, 2020): 5698. https://doi.org/10.1038/s41467-020-19473-7.
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    • Sieberts, Solveig K., Thanneer M. Perumal, Minerva M. Carrasquillo, Mariet Allen, Joseph S. Reddy, Gabriel E. Hoffman, Kristen K. Dang, et al. “Large eQTL meta-analysis reveals differing patterns between cerebral cortical and cerebellar brain regions.” Sci Data 7, no. 1 (October 12, 2020): 340. https://doi.org/10.1038/s41597-020-00642-8.
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    • Kling, Mitchel A., Dayan B. Goodenowe, Vijitha Senanayake, Siamak MahmoudianDehkordi, Matthias Arnold, Tyler J. Massaro, Rebecca Baillie, et al. “Circulating ethanolamine plasmalogen indices in Alzheimer's disease: Relation to diagnosis, cognition, and CSF tau.” Alzheimers Dement 16, no. 9 (September 2020): 1234–47. https://doi.org/10.1002/alz.12110.
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    • Wang, Jingye, Runmin Wei, Guoxiang Xie, Matthias Arnold, Alexandra Kueider-Paisley, Gregory Louie, Siamak Mahmoudian Dehkordi, et al. “Peripheral serum metabolomic profiles inform central cognitive impairment.” Sci Rep 10, no. 1 (August 20, 2020): 14059. https://doi.org/10.1038/s41598-020-70703-w.
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    • Zhao, Na, Yingxue Ren, Yu Yamazaki, Wenhui Qiao, Fuyao Li, Lindsey M. Felton, Siamak Mahmoudiandehkordi, et al. “Alzheimer's Risk Factors Age, APOE Genotype, and Sex Drive Distinct Molecular Pathways.” Neuron 106, no. 5 (June 3, 2020): 727-742.e6. https://doi.org/10.1016/j.neuron.2020.02.034.
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    • Bernath, Megan M., Sudeepa Bhattacharyya, Kwangsik Nho, Dinesh Kumar Barupal, Oliver Fiehn, Rebecca Baillie, Shannon L. Risacher, et al. “Serum triglycerides in Alzheimer disease: Relation to neuroimaging and CSF biomarkers.” Neurology 94, no. 20 (May 19, 2020): e2088–98. https://doi.org/10.1212/WNL.0000000000009436.
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    • Arnold, Matthias, Kwangsik Nho, Alexandra Kueider-Paisley, Tyler Massaro, Kevin Huynh, Barbara Brauner, Siamak MahmoudianDehkordi, et al. “Sex and APOE ε4 genotype modify the Alzheimer's disease serum metabolome.” Nat Commun 11, no. 1 (March 2, 2020): 1148. https://doi.org/10.1038/s41467-020-14959-w.
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    • Ahmed, Ahmed T., Siamak MahmoudianDehkordi, Sudeepa Bhattacharyya, Matthias Arnold, Duan Liu, Drew Neavin, M Arthur Moseley, et al. “Acylcarnitine metabolomic profiles inform clinically-defined major depressive phenotypes.” J Affect Disord 264 (March 1, 2020): 90–97. https://doi.org/10.1016/j.jad.2019.11.122.
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    • Barupal, Dinesh Kumar, Rebecca Baillie, Sili Fan, Andrew J. Saykin, Peter J. Meikle, Matthias Arnold, Kwangsik Nho, Oliver Fiehn, Rima Kaddurah-Daouk, and Rima Alzheimer Disease Metabolomics Consortium. “Sets of coregulated serum lipids are associated with Alzheimer's disease pathophysiology.” Alzheimers Dement (Amst) 11 (December 2019): 619–27. https://doi.org/10.1016/j.dadm.2019.07.002.
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    • St John-Williams, Lisa, Siamak Mahmoudiandehkordi, Matthias Arnold, Tyler Massaro, Colette Blach, Gabi Kastenmüller, Gregory Louie, et al. “Bile acids targeted metabolomics and medication classification data in the ADNI1 and ADNIGO/2 cohorts.” Sci Data 6, no. 1 (October 17, 2019): 212. https://doi.org/10.1038/s41597-019-0181-8.
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    • Bhattacharyya, Sudeepa, Ahmed T. Ahmed, Matthias Arnold, Duan Liu, Chunqiao Luo, Hongjie Zhu, Siamak Mahmoudiandehkordi, et al. “Metabolomic signature of exposure and response to citalopram/escitalopram in depressed outpatients.” Transl Psychiatry 9, no. 1 (July 4, 2019): 173. https://doi.org/10.1038/s41398-019-0507-5.
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    • Nho, Kwangsik, Alexandra Kueider-Paisley, Shahzad Ahmad, Siamak MahmoudianDehkordi, Matthias Arnold, Shannon L. Risacher, Gregory Louie, et al. “Association of Altered Liver Enzymes With Alzheimer Disease Diagnosis, Cognition, Neuroimaging Measures, and Cerebrospinal Fluid Biomarkers.” Jama Netw Open 2, no. 7 (July 3, 2019): e197978. https://doi.org/10.1001/jamanetworkopen.2019.7978.
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    • Nho, Kwangsik, Alexandra Kueider-Paisley, Siamak MahmoudianDehkordi, Matthias Arnold, Shannon L. Risacher, Gregory Louie, Colette Blach, et al. “Altered bile acid profile in mild cognitive impairment and Alzheimer's disease: Relationship to neuroimaging and CSF biomarkers.” Alzheimers Dement 15, no. 2 (February 2019): 232–44. https://doi.org/10.1016/j.jalz.2018.08.012.
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    • MahmoudianDehkordi, Siamak, Matthias Arnold, Kwangsik Nho, Shahzad Ahmad, Wei Jia, Guoxiang Xie, Gregory Louie, et al. “Altered bile acid profile associates with cognitive impairment in Alzheimer's disease-An emerging role for gut microbiome.” Alzheimers Dement 15, no. 1 (January 2019): 76–92. https://doi.org/10.1016/j.jalz.2018.07.217.
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    • Arnold, M., J. Raffler, K. Suhre, and G. Kastenmüller. “Datenbasierte Funktionsvorhersage krankheitsrelevanter genetischer Varianten.” Biospektrum 24, no. 6 (October 1, 2018): 662–63. https://doi.org/10.1007/s12268-018-0972-z.
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    • Adler, Angela, Pia Kirchmeier, Julian Reinhard, Barbara Brauner, Irmtraud Dunger, Gisela Fobo, Goar Frishman, et al. “PhenoDis: a comprehensive database for phenotypic characterization of rare cardiac diseases.” Orphanet J Rare Dis 13, no. 1 (January 25, 2018): 22. https://doi.org/10.1186/s13023-018-0765-y.
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    • Varma, Vijay R., Anup M. Oommen, Sudhir Varma, Ramon Casanova, Yang An, Ryan M. Andrews, Richard O’Brien, et al. “Brain and blood metabolite signatures of pathology and progression in Alzheimer disease: A targeted metabolomics study.” Plos Med 15, no. 1 (January 2018): e1002482. https://doi.org/10.1371/journal.pmed.1002482.
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    • St John-Williams, Lisa, Colette Blach, Jon B. Toledo, Daniel M. Rotroff, Sungeun Kim, Kristaps Klavins, Rebecca Baillie, et al. “Targeted metabolomics and medication classification data from participants in the ADNI1 cohort.” Sci Data 4 (October 17, 2017): 170140. https://doi.org/10.1038/sdata.2017.140.
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    • Toledo, Jon B., Matthias Arnold, Gabi Kastenmüller, Rui Chang, Rebecca A. Baillie, Xianlin Han, Madhav Thambisetty, et al. “Metabolic network failures in Alzheimer's disease: A biochemical road map.” Alzheimers Dement 13, no. 9 (September 2017): 965–84. https://doi.org/10.1016/j.jalz.2017.01.020.
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    • Suhre, Karsten, Matthias Arnold, Aditya Mukund Bhagwat, Richard J. Cotton, Rudolf Engelke, Johannes Raffler, Hina Sarwath, et al. “Connecting genetic risk to disease end points through the human blood plasma proteome.” Nat Commun 8 (February 27, 2017): 14357. https://doi.org/10.1038/ncomms14357.
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    • Fard, Delnaz, Katharina Läer, Thomas Rothämel, Peter Schürmann, Matthias Arnold, Marta Cohen, Mechtild Vennemann, et al. “Candidate gene variants of the immune system and sudden infant death syndrome.” Int J Legal Med 130, no. 4 (July 2016): 1025–33. https://doi.org/10.1007/s00414-016-1347-y.
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    • Raffler, Johannes, Nele Friedrich, Matthias Arnold, Tim Kacprowski, Rico Rueedi, Elisabeth Altmaier, Sven Bergmann, et al. “Genome-Wide Association Study with Targeted and Non-targeted NMR Metabolomics Identifies 15 Novel Loci of Urinary Human Metabolic Individuality.” Plos Genet 11, no. 9 (September 2015): e1005487. https://doi.org/10.1371/journal.pgen.1005487.
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    • Arnold, Matthias, Johannes Raffler, Arne Pfeufer, Karsten Suhre, and Gabi Kastenmüller. “SNiPA: an interactive, genetic variant-centered annotation browser.” Bioinformatics 31, no. 8 (April 15, 2015): 1334–36. https://doi.org/10.1093/bioinformatics/btu779.
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    • Shin, So-Youn, Eric B. Fauman, Ann-Kristin Petersen, Jan Krumsiek, Rita Santos, Jie Huang, Matthias Arnold, et al. “An atlas of genetic influences on human blood metabolites.” Nat Genet 46, no. 6 (June 2014): 543–50. https://doi.org/10.1038/ng.2982.
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    • Wjst, Matthias, Muralidharan Sargurupremraj, and Matthias Arnold. “Genome-wide association studies in asthma: what they really told us about pathogenesis.” Curr Opin Allergy Clin Immunol 13, no. 1 (February 2013): 112–18. https://doi.org/10.1097/ACI.0b013e32835c1674.
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    • Arnold, Matthias, Mara L. Hartsperger, Hansjörg Baurecht, Elke Rodríguez, Benedikt Wachinger, Andre Franke, Michael Kabesch, et al. “Network-based SNP meta-analysis identifies joint and disjoint genetic features across common human diseases.” Bmc Genomics 13 (September 18, 2012): 490. https://doi.org/10.1186/1471-2164-13-490.
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    • Arnold, B., W. Häuser, M. Arnold, M. Bernateck, K. Bernardy, W. Brückle, E. Friedel, et al. “[Multicomponent therapy of fibromyalgia syndrome. Systematic review, meta-analysis and guideline].” Schmerz 26, no. 3 (June 2012): 287–90. https://doi.org/10.1007/s00482-012-1173-1.
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    • Arnold, Matthias, Daniel C. Ellwanger, Mara L. Hartsperger, Arne Pfeufer, and Volker Stümpflen. “Cis-acting polymorphisms affect complex traits through modifications of microRNA regulation pathways.” Plos One 7, no. 5 (2012): e36694. https://doi.org/10.1371/journal.pone.0036694.
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  • Conference Papers

    • Ahmed, Ahmed T., Siamak Mahmoudian Dehkordi, Sudeepa Bhattacharyya, Matthias Arnold, Gregory Louie, Boadie Dunlop, Liewei Wang, et al. “T126. Short- Vs Medium + Long-Chain Plasma Acylcarnitine in Phenotypes of Major Depression at Baseline and After Citalopram/Escitalopram Treatment.” In Biological Psychiatry, 85:S177–78. Elsevier BV, 2019. https://doi.org/10.1016/j.biopsych.2019.03.449.
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