Scholars@Duke

• Publications & Artistic Works
• 

  Selected Publications

  • Academic Articles

    • Longhurst, Max L., Daniel C. Coster, Paul G. Wolf, Aaron M. Duffy, Hyunju Lee, and Todd Campbell. “Multi-year professional development grounded in educative curriculum focused on integrating technology with reformed science teaching principles.” Sch. Sci. Math. 116 (December 2016): 430–41.
    • Duffy, Aaron M., Mary C. Stensvold, and Donald R. Farrar. “Independent gametophytes of Hymenophyllum wrightii in North America: not as rare as we thought.” Am. Fern J. 105 (2015): 45–55.
    • Sessa, Emily B., Jo Ann Banks, Michael S. Barker, Joshua P. Der, Aaron M. Duffy, Sean W. Graham, Mitsuyasu Hasebe, et al. “Between two fern genomes.” Gigascience 3 (September 2014): 15–15.
       Open Access Copy
    • Schilling, Martin P., Paul G. Wolf, Aaron M. Duffy, Hardeep S. Rai, Carol A. Rowe, Bryce A. Richardson, and Karen E. Mock. “Genotyping-by-sequencing for Populus population genomics: an assessment of genome sampling patterns and filtering approaches.” Plos One 9 (April 2014): e95292–e95292.
    • Campbell, Todd, Max Longhurst, Aaron M. Duffy, Paul G. Wolf, and Brett E. Shelton. “Science teaching orientations and technology-enhanced tools for student learning.” Res. Bull. Fac. Educ. Welf. Sci. Oita Univ. 43 (October 2013): 2035–57.
    • Duffy, A. M., P. G. Wolf, J. Barrow, M. Longhurst, and T. Campbell. “Ecological investigations within an interactive plant community simulation.” Science Scope, 2013.
    • Clark, John L., Mindie M. Funke, Aaron M. Duffy, and James F. Smith. “Phylogeny of a neotropical clade in the Gesneriaceae: more tales of convergent evolution.” Int. J. Plant Sci. 173 (October 2012): 894–916.
    • Campbell, Todd, Max Longhurst, Aaron M. Duffy, Paul G. Wolf, and Robin Nagy. “Investigating human impact in the environment with faded scaffolded inquiry supported by technologies.” Science Activities: Classroom Projects and Curriculum Ideas 49 (2012): 99–107.
    • Benninghoff, Abby D., Gayle A. Orner, Clarissa H. Buchner, Jerry D. Hendricks, Aaron M. Duffy, and David E. Williams. “Promotion of hepatocarcinogenesis by perfluoroalkyl acids in rainbow trout.” Toxicol. Sci. 125 (October 2011): 69–78.
    • Wolf, P. G., J. P. Der, A. M. Duffy, J. B. Davidson, A. L. Grusz, and K. M. Pryer. “The evolution of chloroplast genes and genomes in ferns.” Plant Molecular Biology 76, no. 3–5 (2011): 251–61.
       Open Access Copy
    • Campbell, Todd, Shaing Kwei Wang, Hui-Yin Hsu, Aaron M. Duffy, and Paul G. Wolf. “Learning with web tools, simulations, and other technologies in science classrooms.” J. Sci. Educ. Technol. 19 (October 2010): 505–11.
    • Karol, Kenneth G., Kathiravetpillai Arumuganathan, Jeffrey L. Boore, Aaron M. Duffy, Karin D. E. Everett, John D. Hall, S Kellon Hansen, et al. “Complete plastome sequences of Equisetum arvense and Isoetes flaccida: implications for phylogeny and plastid genome evolution of early land plant lineages.” Bmc Evol. Biol. 10 (October 2010): 321–321.
    • Wolf, Paul G., Jessie M. Roper, and Aaron M. Duffy. “The evolution of chloroplast genome structure in ferns.” Genome 53 (September 2010): 731–38.
    • Oliver, Melvin J., Andrew G. Murdock, Brent D. Mishler, Jennifer V. Kuehl, Jeffrey L. Boore, Dina F. Mandoli, Karin D. E. Everett, Paul G. Wolf, Aaron M. Duffy, and Kenneth G. Karol. “Chloroplast genome sequence of the moss Tortula ruralis: gene content, polymorphism, and structural arrangement relative to other green plant chloroplast genomes.” Bmc Genomics 11 (February 2010): 143–143.
    • Wolf, Paul G., Aaron M. Duffy, and Jessie M. Roper. “Phylogenetic use of inversions in fern chloroplast genomes.” Am. Fern J. 99 (April 2009): 132–34.
    • Duffy, Aaron M., Scot A. Kelchner, and Paul G. Wolf. “Conservation of selection on matK following an ancient loss of its flanking intron.” Gene 438 (February 2009): 17–25.

  • Conference Papers

    • Liu, Huaiyu, M. Bowman, W. A. Hunt, and A. M. Duffy. “Enabling behavior reuse in development of virtual environment applications.” In Simulation Conference (Wsc), Proceedings of the 2012 Winter, 1–12, 2012.

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