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G. Allan Johnson

Charles E. Putman University Distinguished Professor of Radiology
Radiology
Box 3302 Med Ctr, Durham, NC 27710
141D Bryan Neuroscience Bldg, Research Drive, Durham, NC 27710
Office hours 8:30 AM-5:00 PM and by appointment.  

Scholarly Works - Conferences


Comparing Systemic, Localized, and Focused Ultrasound-Mediated Delivery of Evolocumab (α-PCSK9) in a Murine Model of Glioblastoma 2303312

Conference The Journal of Immunology · August 1, 2026 AbstractIntroductionKey challenges in treating glioblastoma are the immunosuppressive tumor microenvironment and the blood-brai ... Full text Cite

Image-processing pipelines: Applications in magnetic resonance histology

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · January 1, 2016 Image processing has become ubiquitous in imaging research - so ubiquitous that it is easy to loose track of how diverse this processing has become. The Duke Center for In Vivo Microscopy has pioneered the development of Magnetic Resonance Histology (MRH), ... Full text Cite

Use of magnetic resonance imaging in the study of plants and soils

Conference · October 26, 2015 The nondestructive study of plants and soils in situ has historically been difficult due to the inherently opaque nature of the system. Repeated study of root growth and physiological processes in bulk soil has been impossible without techniques for remote ... Full text Cite

Magnetic resonance histology—Applications in toxicology

Conference Toxicology Letters · September 2014 Featured Work Full text Cite

Helical dual source cone-beam micro-CT

Conference 2014 IEEE 11th International Symposium on Biomedical Imaging Isbi 2014 · July 29, 2014 While helical scanning is well established in the clinical arena, most micro-CT scanners use circular cone beam trajectories and approximate reconstructions based on a filtered backprojection (FBP) algorithm. This may be sufficient for some applications, b ... Full text Cite

A multi-resolution approach to retrospectively-gated cardiac micro-CT reconstruction

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · January 1, 2014 In preclinical research, micro-CT is commonly used to provide anatomical information; however, there is significant interest in using this technology to obtain functional information in cardiac studies. The fastest acquisition in 4D cardiac micro-CT imagin ... Full text Cite

Robust material decomposition for spectral CT

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · January 1, 2014 There is ongoing interest in extending CT from anatomical to functional imaging. Recent successes with dual energy CT, the introduction of energy discriminating x-ray detectors, and novel, target-specific, nanoparticle contrast agents enable functional ima ... Full text Cite

Dual-energy micro-CT imaging of pulmonary airway obstruction: Correlation with micro-SPECT

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · January 1, 2014 To match recent clinical dual energy (DE) CT studies focusing on the lung, similar developments for DE micro-CT of the rodent lung are required. Our group has been actively engaged in designing pulmonary gating techniques for micro- CT, and has also introd ... Full text Cite

The effect of scatter correction on dual energy micro-CT

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · June 3, 2013 Dual energy (DE) CT imaging is expected to play a major role in the diagnostic arena as it provides a quantitative decomposition of basis materials, opening the door for new clinical applications without significantly increasing dose to the patient. DE-CT ... Full text Cite

A comparison of sampling strategies for dual energy micro-CT

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · May 4, 2012 Micro-CT has become a powerful tool for small animal research. Many micro-CT applications require exogenous contrast agents, which are most commonly based on iodine. Despite advancements in contrast agents, single-energy micro-CT is sometimes limited in th ... Full text Cite

Denoising of 4D Cardiac Micro-CT Data Using Median-Centric Bilateral Filtration.

Conference Proc SPIE Int Soc Opt Eng · February 23, 2012 Bilateral filtration has proven an effective tool for denoising CT data. The classic filter utilizes Gaussian domain and range weighting functions in 2D. More recently, other distributions have yielded more accurate results in specific applications, and th ... Full text Link to item Cite

Investigations on X-ray luminescence CT for small animal imaging.

Conference Proc SPIE Int Soc Opt Eng · 2012 X-ray Luminescence CT (XLCT) is a hybrid imaging modality combining x-ray and optical imaging in which x-ray luminescent nanophosphors (NPs) are used as emissive imaging probes. NPs are easily excited using common CT energy x-ray beams, and the NP luminesc ... Full text Link to item Cite

MAGNETIC RESONANCE MICROSCOPY-BASED 3D FACE-BRAIN CORRELATIONS IN AN FASD MOUSE MODEL

Conference ALCOHOLISM-CLINICAL AND EXPERIMENTAL RESEARCH · June 2011 Link to item Cite

Dual-energy micro-CT imaging for differentiation of iodine- and gold-based nanoparticles

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · May 13, 2011 Spectral CT imaging is expected to play a major role in the diagnostic arena as it provides material decomposition on an elemental basis. One fascinating possibility is the ability to discriminate multiple contrast agents targeting different biological sit ... Full text Cite

MAGNETIC RESONANCE IMAGING-BASED ANALYSES OF A FETAL ALCOHOL SPECTRUM DISORDERS MOUSE MODEL

Conference ALCOHOLISM-CLINICAL AND EXPERIMENTAL RESEARCH · August 10, 2010 Link to item Cite

GPU-based iterative reconstruction with total variation minimization for micro-CT

Conference Progress in Biomedical Optics and Imaging - Proceedings of SPIE · 2010 Dynamic imaging with micro-CT often produces poorly-distributed sets of projections, and reconstructions of this data with filtered backprojection algorithms (FBP) may be affected by artifacts. Iterative reconstruction algorithms and total variation (TV) d ... Full text Cite

Free-space fluorescence tomography with adaptive sampling based on anatomical information from microCT.

Conference Proc SPIE Int Soc Opt Eng · 2010 Image reconstruction is one of the main challenges for fluorescence tomography. For in vivo experiments on small animals, in particular, the inhomogeneous optical properties and irregular surface of the animal make free-space image reconstruction challengi ... Full text Link to item Cite

Static and dynamic cardiac modelling: Initial strides and results towards a quantitatively accurate mechanical heart model

Conference 2010 7th IEEE International Symposium on Biomedical Imaging from Nano to Macro Isbi 2010 Proceedings · January 1, 2010 Magnetic Resonance Imaging (MRI) has exhibited significant potential for quantifying cardiac function and dysfunction in the mouse. Recent advances in highresolution cardiac MR imaging techniques have contributed to the development of acquisition approache ... Full text Cite

Dissecting the Mechanism of Tumor Response to Radiation Therapy with Primary Lung Cancers in Mice

Conference International Journal of Radiation Oncology*Biology*Physics · November 2009 Full text Cite

A material decomposition method for dual energy micro-CT

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · June 15, 2009 The attenuation of x-rays in matter is dependent on the energy of the x-rays and the atomic composition of the matter. Attenuation measurements at multiple x-ray energies can be used to improve the identification of materials. We present a method to estima ... Full text Cite

4D micro-CT-based perfusion imaging in small animals

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · June 15, 2009 Quantitative in-vivo imaging of lung perfusion in rodents can provide critical information for preclinical studies. However, the combined challenges of high temporal and spatial resolution have made routine quantitative perfusion imaging difficult in roden ... Full text Cite

Development of a noncontact 3-D fluorescence tomography system for small animal in vivo imaging.

Conference Proc SPIE Int Soc Opt Eng · February 16, 2009 Fluorescence imaging is an important tool for tracking molecular-targeting probes in preclinical studies. It offers high sensitivity, but nonetheless low spatial resolution compared to other leading imaging methods such CT and MRI. We demonstrate our metho ... Full text Link to item Cite

A dual micro-CT system for small animal imaging.

Conference Proc SPIE Int Soc Opt Eng · April 18, 2008 Micro-CT is a non-invasive imaging modality usually used to assess morphology in small animals. In our previous work, we have demonstrated that functional micro-CT imaging is also possible. This paper describes a dual micro-CT system with two fixed x-ray/d ... Full text Link to item Cite

Brain atlasing tool interoperation: NeuroTerrain-Smart Atlas synergistic visualization and analysis environment

Conference Proceedings of the 3rd International IEEE EMBS Conference on Neural Engineering · September 25, 2007 Many research efforts using anatomical image analysis have as their goal to identify biologically relevant objects present within the image data, to provide a means to quantitatively analyze these objects, to compare the distribution of those objects to ot ... Full text Cite

Measurement and modeling of 4D live mouse heart volumes from CT time series

Conference Proceedings of SPIE the International Society for Optical Engineering · January 1, 2007 In vivo quantitative studies of cardiac function in mouse models provide information about cardiac pathophysiology in more detail than can be obtained in humans. Quantitative measurements of left ventricular (LV) volume at multiple contractile phases are p ... Full text Cite

MO‐D‐330D‐01: Molecular Imaging I: The Physics of Molecular Imaging

Conference Medical Physics · January 1, 2006 The first day of the Molecular Imaging Symposium (MI‐1) will focus on the technology aspects of molecular, functional, and small animal imaging. Modalities which will be discussed include micro‐CT, micro‐PET, and high resolution MRI for small animal imagin ... Full text Cite

Micro radiography imaging of the rodent with phenylephrine induced vascular hypertension

Conference 2006 3rd IEEE International Symposium on Biomedical Imaging from Nano to Macro Proceedings · January 1, 2006 Vascular tonicity plays a major role in regulating the blood pressure and the perfusion of organs, and hypertension is a major cause of morbidity and mortality in humans. We use phenylephrine, a vasoconstrictor, to create a model of hypertension in the rat ... Full text Cite

Multimodality imaging of pulmonary function in the rodent

Conference 2006 3rd IEEE International Symposium on Biomedical Imaging from Nano to Macro Proceedings · January 1, 2006 The high spatial and temporal resolution demands for imaging physiological function in the rodent call for the use of novel ways to combine information from different imaging modalities. This work describes ventilation imaging using hyperpolarized (HP) Full text Cite

Functional imaging in small animals using tomographic digital subtraction angiography

Conference 2006 3rd IEEE International Symposium on Biomedical Imaging from Nano to Macro Proceedings · January 1, 2006 We propose the use of Tomographic Digital Subtraction Angiography (TDSA) for functional imaging in small animals. TDSA combines the advantages of high temporal resolution of digital subtraction angiography (DSA) and high spatial resolution of micro-compute ... Full text Cite

Morphology of the small-animal lung using magnetic resonance microscopy.

Conference Proc Am Thorac Soc · 2005 Small-animal imaging with magnetic resonance microscopy (MRM) has become an important tool in biomedical research. When MRM is used to image perfusion-fixed and "stained" whole mouse specimens, cardiopulmonary morphology can be visualized, nondestructively ... Full text Link to item Cite

Utilizing MRI information to estimate F18-FDG distributions in rat flank tumors

Conference IEEE Nuclear Science Symposium Conference Record · January 1, 2004 This paper investigates the potential of magnetic resonance imaging (MRI) to improve the estimation of within-tumor variations in F18-FDG concentration. An image model is described for incorporating MRI images into positron emission tomography (PET) and si ... Full text Cite

Optimized radiographic spectra for digital subtraction angiography in the mouse

Conference 2004 2nd IEEE International Symposium on Biomedical Imaging Macro to Nano · January 1, 2004 The availability of genetically altered mouse models of human disease and the increasing use of small animals in basic research have spurred extraordinary interest in new imaging methodologies - particularly magnetic resonance microscopy, microCT, and micr ... Full text Cite

Volumetric micro-CT system for in vivo microscopy

Conference 2004 2nd IEEE International Symposium on Biomedical Imaging Macro to Nano · January 1, 2004 Two of the major barriers to improved image quality in micro-CT are the reduced signal to noise imposed by the smaller voxels and the effects of physiologic motion. The most direct approach to increase the signal to noise ratio (SNR) is to increase the flu ... Full text Cite

Effects of breathing motion on the spatial resolution in microscopic imaging techniques of rodents

Conference 2004 2nd IEEE International Symposium on Biomedical Imaging Macro to Nano · January 1, 2004 Magnetic resonance microscopy is capable of producing high-resolution pulmonary images in live rodents by synchronizing the image acquisition across multiple breaths. The precision with which one can control motion will probably define the resolution limit ... Full text Cite

An engineering approach to image-based phenotyping

Conference 2002 IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING, PROCEEDINGS · 2002 Featured Work Link to item Cite

Distributed multiuser visualization of time varying anatomical data

Conference Proceedings Applied Imagery Pattern Recognition Workshop · January 1, 2001 We describe a networked environment for navigating and visualizing 3-dimensional anatomical data with extensions for time varying volumes. The Duke Center for In Vivo Microscopy (CIVM) has been capturing volumetric data of mice using magnetic resonance mic ... Full text Cite

MAGNETIC-RESONANCE MICROSCOPY OF WATER-MOVEMENT THROUGH FUSIFORM RUST GALLS OF PINE

Conference RESEARCH AND APPLICATIONS OF CHEMICAL SCIENCES IN FORESTRY · 1994 Link to item Cite

MAGNETIC-RESONANCE MICROSCOPY (MRM) OF WATER TRANSPORT AND BINDING IN FUSIFORM RUST GALLS

Conference RESEARCH AND APPLICATIONS OF CHEMICAL SCIENCES IN FORESTRY · January 1, 1994 Link to item Cite

NONDESTRUCTIVE, 3-DIMENSIONAL STUDY OF ROOT-GROWTH WITH MAGNETIC-RESONANCE MICROSCOPY (MRM)

Conference RESEARCH AND APPLICATIONS OF CHEMICAL SCIENCES IN FORESTRY · January 1, 1994 Link to item Cite

Investigation of transmolybdenum fluorescent anodes for mammography

Conference Proceedings of SPIE the International Society for Optical Engineering · August 18, 1980 Recent work has suggested a new approach to film/screen mammography through the use of transmolybdenum (Z > 42) fluorescent anodes. An experimental rhodium (Z = 45) anode with K emission at 20.0 - 23.2 keV has been compared to a conventional molybdenum ano ... Full text Cite