Scholars@Duke

• Background
• 

  Education, Training, & Certifications

  • Associate, Pathology, Duke University 1993 - 1994
  • Fellow, Clinical Microbiology, Pathology, Duke University 1993 - 1994
  • Chief Resident, Pathology, Duke University 1992 - 1993
  • M.D., Duke University 1989
  • Ph.D., Duke University 1989
• 

  Duke Appointment History

  • Assistant Professor of Pathology, Pathology, Clinical Science Departments 1994 - 2004
  • Associate in the Department of Pathology, Pathology, Clinical Science Departments 1993 - 1994
• Research
• 

  Selected Grants

  • Novel Immune Modulating Cellular Vaccine for Prostate Cancer Immunotherapy awarded by Department of Defense 2013 - 2017
  • Single cell analysis of intratumoral heterogeneity in parathyroid neoplasia awarded by National Institutes of Health 2015 - 2017
  • Cavitation and Wound Healing In SWL awarded by National Institutes of Health 2000 - 2008
  • Prostate Cancer: Impact of Fat & Flaxseed Modified Diets awarded by National Institutes of Health 2002 - 2007
  • Mechanisms of Endothelial Cell Death in the Ischemic Liver awarded by National Institutes of Health 1999 - 2000
• Publications & Artistic Works
• 

  Selected Publications

  • Academic Articles

    • George, Daniel J., Susan Halabi, Patrick Healy, Darius Jonasch, Monika Anand, Julia Rasmussen, Sarah Y. Wood, Charles Spritzer, John F. Madden, and Andrew J. Armstrong. “Phase 2 clinical trial of TORC1 inhibition with everolimus in men with metastatic castration-resistant prostate cancer.” Urologic Oncology 38, no. 3 (March 2020): 79.e15-79.e22. https://doi.org/10.1016/j.urolonc.2019.08.015.
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    • Mayes, J. M., V. Mouraviev, L. Sun, J. F. Madden, and T. J. Polascik. “Retraction Note: Can the conventional sextant prostate biopsy reliably diagnose unilateral prostate cancer in low-risk, localized, prostate cancer? (Prostate Cancer and Prostatic Diseases, (2008), 10.1038/pcan.2008.31).” Prostate Cancer and Prostatic Diseases, January 1, 2020. https://doi.org/10.1038/pcan.2008.31z.
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    • Brown, C Scott, Ralph Abi Hachem, Avani Pendse, John F. Madden, and Howard W. Francis. “Low-Grade Papillary Schneiderian Carcinoma of the Sinonasal Cavity and Temporal Bone.” Ann Otol Rhinol Laryngol 127, no. 12 (December 2018): 974–77. https://doi.org/10.1177/0003489418803391.
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    • Carlos, Evan C., Divya Ajay, Saisha Muniz-Alers, Daniel S. Wechsler, Deepak Vikraman Sushama, Henry E. Rice, John Madden, and Jonathan C. Routh. “Wilms Tumor After Orthotopic Liver Transplant in a Patient With Alagille Syndrome.” Urology 121 (November 2018): 171–74. https://doi.org/10.1016/j.urology.2018.05.020.
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    • Cronan, Mark R., Rebecca W. Beerman, Allison F. Rosenberg, Joseph W. Saelens, Matthew G. Johnson, Stefan H. Oehlers, Dana M. Sisk, et al. “Macrophage Epithelial Reprogramming Underlies Mycobacterial Granuloma Formation and Promotes Infection.” Immunity 45, no. 4 (October 18, 2016): 861–76. https://doi.org/10.1016/j.immuni.2016.09.014.
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    • Gupta, Rajan T., Alison Flanagan Brown, Rachel Kloss Silverman, Kae Jack Tay, John F. Madden, Daniel J. George, and Thomas J. Polascik. “Can Radiologic Staging With Multiparametric MRI Enhance the Accuracy of the Partin Tables in Predicting Organ-Confined Prostate Cancer?” Ajr Am J Roentgenol 207, no. 1 (July 2016): 87–95. https://doi.org/10.2214/AJR.15.15878.
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    • Palmeri, Mark L., Tyler J. Glass, Zachary A. Miller, Stephen J. Rosenzweig, Andrew Buck, Thomas J. Polascik, Rajan T. Gupta, Alison F. Brown, John Madden, and Kathryn R. Nightingale. “Identifying Clinically Significant Prostate Cancers using 3-D In Vivo Acoustic Radiation Force Impulse Imaging with Whole-Mount Histology Validation.” Ultrasound Med Biol 42, no. 6 (June 2016): 1251–62. https://doi.org/10.1016/j.ultrasmedbio.2016.01.004.
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    • Gupta, Rajan T., Christopher R. Kauffman, Kirema Garcia-Reyes, Mark L. Palmeri, John F. Madden, Thomas J. Polascik, and Andrew B. Rosenkrantz. “Apparent Diffusion Coefficient Values of the Benign Central Zone of the Prostate: Comparison With Low- and High-Grade Prostate Cancer.” Ajr Am J Roentgenol 205, no. 2 (August 2015): 331–36. https://doi.org/10.2214/AJR.14.14221.
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    • Azrad, M., R. T. Vollmer, J. Madden, T. J. Polascik, D. C. Snyder, M. T. Ruffin, J. W. Moul, D. Brenner, X. He, and W. Demark-Wahnefried. “Disparate results between proliferation rates of surgically excised prostate tumors and an in vitro bioassay using sera from a positive randomized controlled trial.” Biotech Histochem 90, no. 3 (April 2015): 184–89. https://doi.org/10.3109/10520295.2014.976840.
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    • Palmeri, Mark L., Zachary A. Miller, Tyler J. Glass, Kirema Garcia-Reyes, Rajan T. Gupta, Stephen J. Rosenzweig, Christopher Kauffman, et al. “B-mode and acoustic radiation force impulse (ARFI) imaging of prostate zonal anatomy: comparison with 3T T2-weighted MR imaging.” Ultrason Imaging 37, no. 1 (January 2015): 22–41. https://doi.org/10.1177/0161734614542177.
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    • Gupta, Rajan T., Kamil F. Faridi, Abhay A. Singh, Niccolò M. Passoni, Kirema Garcia-Reyes, John F. Madden, and Thomas J. Polascik. “Comparing 3-T multiparametric MRI and the Partin tables to predict organ-confined prostate cancer after radical prostatectomy.” Urol Oncol 32, no. 8 (November 2014): 1292–99. https://doi.org/10.1016/j.urolonc.2014.04.017.
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    • McNamara, Erin R., Ramiro J. Madden-Fuentes, Jonathan C. Routh, Douglas Rouse, John F. Madden, John S. Wiener, Harry G. Rushton, and Sherry S. Ross. “Evaluation of cold ischemia for preservation of testicular function during partial orchiectomy in the rat model.” J Pediatr Urol 10, no. 4 (August 2014): 593–97. https://doi.org/10.1016/j.jpurol.2014.06.005.
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    • Tsivian, Matvey, Edward N. Rampersaud, Maria del Pilar Laguna Pes, Steven Joniau, Raymond J. Leveillee, William B. Shingleton, Monish Aron, et al. “Small renal mass biopsy--how, what and when: report from an international consensus panel.” Bju Int 113, no. 6 (June 2014): 854–63. https://doi.org/10.1111/bju.12470.
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    • Neisius, Andreas, Nathan B. Smith, Georgy Sankin, Nicholas John Kuntz, John Francis Madden, Daniel E. Fovargue, Sorin Mitran, et al. “Improving the lens design and performance of a contemporary electromagnetic shock wave lithotripter.” Proc Natl Acad Sci U S A 111, no. 13 (April 1, 2014): E1167–75. https://doi.org/10.1073/pnas.1319203111.
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    • Spritzer, Charles E., P Diana Afonso, Emily N. Vinson, James D. Turnbull, Karla K. Morris, Adam Foye, John F. Madden, Kingshuk Roy Choudhury, Phillip G. Febbo, and Daniel J. George. “Bone marrow biopsy: RNA isolation with expression profiling in men with metastatic castration-resistant prostate cancer--factors affecting diagnostic success.” Radiology 269, no. 3 (December 2013): 816–23. https://doi.org/10.1148/radiol.13121782.
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    • Azrad, Maria, Robin T. Vollmer, John Madden, Mark Dewhirst, Thomas J. Polascik, Denise C. Snyder, Mack T. Ruffin, Judd W. Moul, Dean E. Brenner, and Wendy Demark-Wahnefried. “Flaxseed-derived enterolactone is inversely associated with tumor cell proliferation in men with localized prostate cancer.” J Med Food 16, no. 4 (April 2013): 357–60. https://doi.org/10.1089/jmf.2012.0159.
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    • Dietrich, Dimo, Oliver Hasinger, Lionel L. Bañez, Leon Sun, Geert J. van Leenders, Thomas M. Wheeler, Chris H. Bangma, et al. “Development and clinical validation of a real-time PCR assay for PITX2 DNA methylation to predict prostate-specific antigen recurrence in prostate cancer patients following radical prostatectomy.” J Mol Diagn 15, no. 2 (March 2013): 270–79. https://doi.org/10.1016/j.jmoldx.2012.11.002.
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    • Wang, Agnes J., Zachariah G. Goldsmith, Andreas Neisius, Gaston M. Astroza, Olugbemisola Oredein-McCoy, Muhammad W. Iqbal, W Neal Simmons, et al. “Increasing dwell time of mitomycin C in the upper tract with a reverse thermosensitive polymer.” J Endourol 27, no. 3 (March 2013): 288–93. https://doi.org/10.1089/end.2012.0211.
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    • Tsivian, Matvey, Dorit E. Zilberman, Michael N. Ferrandino, John F. Madden, Vladimir Mouraviev, and David M. Albala. “Apical surgical margins status in robot-assisted laparoscopic radical prostatectomy does not depend on disease characteristics.” J Endourol 26, no. 4 (April 2012): 361–65. https://doi.org/10.1089/end.2011.0336.
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    • Tsivian, Matvey, Tiera Wright, Marva Price, Vladimir Mouraviev, John F. Madden, Masaki Kimura, Terrence Wong, and Thomas J. Polascik. “111-In-capromab pendetide imaging using hybrid-γ camera-computer tomography technology is not reliable in detecting seminal vesicle invasion in patients with prostate cancer.” Urol Oncol 30, no. 2 (March 2012): 150–54. https://doi.org/10.1016/j.urolonc.2009.12.005.
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    • Azrad, Maria, Kui Zhang, Robin T. Vollmer, John Madden, Thomas J. Polascik, Denise C. Snyder, Mack T. Ruffin, et al. “Prostatic alpha-linolenic acid (ALA) is positively associated with aggressive prostate cancer: a relationship which may depend on genetic variation in ALA metabolism.” Plos One 7, no. 12 (2012): e53104. https://doi.org/10.1371/journal.pone.0053104.
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    • Zhai, Liang, Thomas J. Polascik, Wen-Chi Foo, Stephen Rosenzweig, Mark L. Palmeri, John Madden, and Kathryn R. Nightingale. “Acoustic radiation force impulse imaging of human prostates: initial in vivo demonstration.” Ultrasound Med Biol 38, no. 1 (January 2012): 50–61. https://doi.org/10.1016/j.ultrasmedbio.2011.10.002.
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    • Bitting, Rhonda L., John Madden, and Andrew J. Armstrong. “Therapy for non-clear cell histologies in renal cancer.” Curr Clin Pharmacol 6, no. 3 (August 2011): 169–80. https://doi.org/10.2174/157488411797189460.
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    • Mayes, Janice M., Vladimir Mouraviev, Leon Sun, Matvey Tsivian, John F. Madden, and Thomas J. Polascik. “Can the conventional sextant prostate biopsy accurately predict unilateral prostate cancer in low-risk, localized, prostate cancer?” Urol Oncol 29, no. 2 (March 2011): 166–70. https://doi.org/10.1016/j.urolonc.2009.03.011.
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    • Tsivian, Matvey, Vladimir Mouraviev, David M. Albala, Jorge R. Caso, Cary N. Robertson, John F. Madden, and Thomas J. Polascik. “Clinical predictors of renal mass pathological features.” Bju Int 107, no. 5 (March 2011): 735–40. https://doi.org/10.1111/j.1464-410X.2010.09629.x.
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    • Zhai, Liang, John Madden, Wen-Chi Foo, Vladimir Mouraviev, Thomas J. Polascik, Mark L. Palmeri, and Kathryn R. Nightingale. “Characterizing stiffness of human prostates using acoustic radiation force.” Ultrason Imaging 32, no. 4 (October 2010): 201–13. https://doi.org/10.1177/016173461003200401.
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    • Bañez, Lionel L., Leon Sun, Geert J. van Leenders, Thomas M. Wheeler, Chris H. Bangma, Stephen J. Freedland, Michael M. Ittmann, et al. “Multicenter clinical validation of PITX2 methylation as a prostate specific antigen recurrence predictor in patients with post-radical prostatectomy prostate cancer.” J Urol 184, no. 1 (July 2010): 149–56. https://doi.org/10.1016/j.juro.2010.03.012.
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    • Tsivian, Matvey, Daniel M. Moreira, Jorge R. Caso, Vladimir Mouraviev, John F. Madden, Gennady Bratslavsky, Cary N. Robertson, David M. Albala, and Thomas J. Polascik. “Predicting occult multifocality of renal cell carcinoma.” Eur Urol 58, no. 1 (July 2010): 118–26. https://doi.org/10.1016/j.eururo.2010.03.011.
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    • Baca, Monica E. de, John F. Madden, and Mary Kennedy. “Electronic pathology reporting: digitizing the College of American Pathologists cancer checklists.” Arch Pathol Lab Med 134, no. 5 (May 2010): 663–64. https://doi.org/10.1043/1543-2165-134.5.663.
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    • Zhai, Liang, John Madden, Wen-Chi Foo, Mark L. Palmeri, Vladimir Mouraviev, Thomas J. Polascik, and Kathryn R. Nightingale. “Acoustic radiation force impulse imaging of human prostates ex vivo.” Ultrasound Med Biol 36, no. 4 (April 2010): 576–88. https://doi.org/10.1016/j.ultrasmedbio.2009.12.006.
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    • Uhlman, Matthew A., Leon Sun, Danielle A. Stackhouse, Arthur A. Caire, Thomas J. Polascik, Cary N. Robertson, John Madden, Robin Vollmer, David M. Albala, and Judd W. Moul. “Tumor volume, tumor percentage involvement, or prostate volume: which is predictive of prostate-specific antigen recurrence?” Urology 75, no. 2 (February 2010): 460–66. https://doi.org/10.1016/j.urology.2009.06.059.
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    • Kimura, Masaki, Matvey Tsivian, Vladimir Mouraviev, Janice M. Mayes, Marva M. Price, Michael C. Bannister, John F. Madden, Terence Z. Wong, and Thomas J. Polascik. “Utilization of (111)In-Capromab pendetide SPECT-CT for detecting seminal vesicle invasion with recurrent prostate cancer after primary in situ therapy.” Int J Urol 16, no. 12 (December 2009): 971–75. https://doi.org/10.1111/j.1442-2042.2009.02413.x.
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    • Tsivian, Matvey, Leon Sun, Vladimir Mouraviev, John F. Madden, Janice M. Mayes, Judd W. Moul, and Thomas J. Polascik. “Changes in Gleason score grading and their effect in predicting outcome after radical prostatectomy.” Urology 74, no. 5 (November 2009): 1090–93. https://doi.org/10.1016/j.urology.2009.03.043.
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    • Mouraviev, Vladimir, John F. Madden, Gloria Broadwater, Janice M. Mayes, James L. Burchette, Frank Schneider, Jill Smith, Matvey Tsivian, Terence Wong, and Thomas J. Polascik. “Use of 111in-capromab pendetide immunoscintigraphy to image localized prostate cancer foci within the prostate gland.” J Urol 182, no. 3 (September 2009): 938–47. https://doi.org/10.1016/j.juro.2009.05.047.
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    • Polascik, Thomas J., Janice M. Mayes, Florian R. Schroeck, Leon Sun, John F. Madden, Judd W. Moul, and Vladimir Mouraviev. “Patient selection for hemiablative focal therapy of prostate cancer: variables predictive of tumor unilaterality based upon radical prostatectomy.” Cancer 115, no. 10 (May 15, 2009): 2104–10. https://doi.org/10.1002/cncr.24258.
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    • Chen, Valerie H., Vladimir Mouraviev, Janice M. Mayes, Leon Sun, John F. Madden, Judd W. Moul, and Thomas J. Polascik. “Utility of a 3-dimensional transrectal ultrasound-guided prostate biopsy system for prostate cancer detection.” Technol Cancer Res Treat 8, no. 2 (April 2009): 99–104. https://doi.org/10.1177/153303460900800202.
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    • Mouraviev, Vladimir, and John F. Madden. “Focal therapy for prostate cancer: pathologic basis.” Curr Opin Urol 19, no. 2 (March 2009): 161–67. https://doi.org/10.1097/MOU.0b013e328323f62b.
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    • Lu, X., G. Sankin, E. C. Pua, J. Madden, and P. Zhong. “Activation of transgene expression in skeletal muscle by focused ultrasound.” Biochem Biophys Res Commun 379, no. 2 (February 6, 2009): 428–33. https://doi.org/10.1016/j.bbrc.2008.12.090.
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    • Demark-Wahnefried, Wendy, Thomas J. Polascik, Stephen L. George, Boyd R. Switzer, John F. Madden, Mack T. Ruffin, Denise C. Snyder, et al. “Flaxseed supplementation (not dietary fat restriction) reduces prostate cancer proliferation rates in men presurgery.” Cancer Epidemiol Biomarkers Prev 17, no. 12 (December 2008): 3577–87. https://doi.org/10.1158/1055-9965.EPI-08-0008.
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    • Isariyawongse, Brandon K., Leon Sun, Lionel L. Bañez, Cary Robertson, Thomas J. Polascik, Kelly Maloney, Craig Donatucci, et al. “Significant discrepancies between diagnostic and pathologic Gleason sums in prostate cancer: the predictive role of age and prostate-specific antigen.” Urology 72, no. 4 (October 2008): 882–86. https://doi.org/10.1016/j.urology.2008.02.021.
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    • Polascik, Thomas J., Janice M. Mayes, Leon Sun, John F. Madden, Judd W. Moul, and Vladimir Mouraviev. “Pathologic stage T2a and T2b prostate cancer in the recent prostate-specific antigen era: implications for unilateral ablative therapy.” Prostate 68, no. 13 (September 15, 2008): 1380–86. https://doi.org/10.1002/pros.20804.
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    • Chen, Valerie H., Janice M. Mayes, John F. Madden, Alexandra J. Stein, Vladimir Mouraviev, and Thomas J. Polascik. “The effect of cryoablation on the histologic interpretation of intraoperative biopsy of small clear cell renal carcinoma and renal oncocytoma.” J Endourol 22, no. 8 (August 2008): 1617–21. https://doi.org/10.1089/end.2008.0156.
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    • Rampersaud, Edward N., Leon Sun, Judd W. Moul, John Madden, and Stephen J. Freedland. “Percent tumor involvement and risk of biochemical progression after radical prostatectomy.” J Urol 180, no. 2 (August 2008): 571–76. https://doi.org/10.1016/j.juro.2008.04.017.
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    • Koontz, Bridget F., Edward F. Miles, Mary Ann D. Rubio, John F. Madden, Samuel R. Fisher, Richard L. Scher, and David M. Brizel. “Preoperative radiotherapy and bevacizumab for angiosarcoma of the head and neck: two case studies.” Head Neck 30, no. 2 (February 2008): 262–66. https://doi.org/10.1002/hed.20674.
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    • Demark-Wahnefried, Wendy, Stephen L. George, Boyd R. Switzer, Denise C. Snyder, John F. Madden, Thomas J. Polascik, Mack T. Ruffin, and Robin T. Vollmer. “Overcoming challenges in designing and implementing a phase II randomized controlled trial using a presurgical model to test a dietary intervention in prostate cancer.” Clin Trials 5, no. 3 (2008): 262–72. https://doi.org/10.1177/1740774508091676.
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    • Fitzsimons, Nicholas J., Leon L. Sun, Philipp Dahm, Judd W. Moul, John Madden, Tong J. Gan, and Stephen J. Freedland. “A single-institution comparison between radical perineal and radical retropubic prostatectomy on perioperative and pathological outcomes for obese men: an analysis of the Duke Prostate Center database.” Urology 70, no. 6 (December 2007): 1146–51. https://doi.org/10.1016/j.urology.2007.07.065.
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    • Mouraviev, Vladimir, Leon Sun, John F. Madden, Janice M. Mayes, Judd W. Moul, and Thomas J. Polascik. “Prostate cancer laterality does not predict prostate-specific antigen recurrence after radical prostatectomy.” Urology 70, no. 6 (December 2007): 1141–45. https://doi.org/10.1016/j.urology.2007.07.066.
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    • Mouraviev, Vladimir, Janice M. Mayes, Leon Sun, John F. Madden, Judd W. Moul, and Thomas J. Polascik. “Prostate cancer laterality as a rationale of focal ablative therapy for the treatment of clinically localized prostate cancer.” Cancer 110, no. 4 (August 15, 2007): 906–10. https://doi.org/10.1002/cncr.22858.
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    • Mouraviev, Vladimir, Janice M. Mayes, John F. Madden, Leon Sun, and Thomas J. Polascik. “Analysis of laterality and percentage of tumor involvement in 1386 prostatectomized specimens for selection of unilateral focal cryotherapy.” Technol Cancer Res Treat 6, no. 2 (April 2007): 91–95. https://doi.org/10.1177/153303460700600205.
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    • Kübler, H. R., S. A. Szukala, J. F. Madden, T. Y. Tseng, D. F. Paulson, J. Vieweg, and P. Dahm. “Apical soft tissue biopsies predict biochemical failure in radical perineal prostatectomy patients with apical cancer involvement.” Prostate Cancer Prostatic Dis 10, no. 1 (2007): 72–76. https://doi.org/10.1038/sj.pcan.4500926.
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    • Raj, Ganesh V., Charles Yowell, John F. Madden, Israel Nosnik, Vladimir Mouraviev, and Thomas J. Polascik. “Malignant cystic nephroma.” Can J Urol 13, no. 6 (December 2006): 3348–50.
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    • Kelly, Patrick, Laura N. Stemmle, John F. Madden, Timothy A. Fields, Yehia Daaka, and Patrick J. Casey. “A role for the G12 family of heterotrimeric G proteins in prostate cancer invasion.” J Biol Chem 281, no. 36 (September 8, 2006): 26483–90. https://doi.org/10.1074/jbc.M604376200.
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    • Maloney, Michaella E., Charles G. Marguet, Yufeng Zhou, David E. Kang, Jeffery C. Sung, W Patrick Springhart, John Madden, Pei Zhong, and Glenn M. Preminger. “Progressive increase of lithotripter output produces better in-vivo stone comminution.” J Endourol 20, no. 9 (September 2006): 603–6. https://doi.org/10.1089/end.2006.20.603.
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    • Pham, Teresa Tram N., M Angelica Selim, James L. Burchette, John Madden, John Turner, and Christopher Herman. “CD10 expression in trichoepithelioma and basal cell carcinoma.” J Cutan Pathol 33, no. 2 (February 2006): 123–28. https://doi.org/10.1111/j.0303-6987.2006.00283.x.
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    • Hu, C. K., S. McCall, J. Madden, H. Huang, R. Clough, R. L. Jirtle, and M. S. Anscher. “Loss of heterozygosity of M6P/IGF2R gene is an early event in the development of prostate cancer.” Prostate Cancer Prostatic Dis 9, no. 1 (2006): 62–67. https://doi.org/10.1038/sj.pcan.4500842.
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    • Madden, John F., James L. Burchette, Ganesh V. Raj, John T. Daly, and Myron Tannenbaum. “Anterior rectal wall gastrointestinal stromal tumor presenting clinically as prostatic mass.” Urol Oncol 23, no. 4 (July 2005): 268–72. https://doi.org/10.1016/j.urolonc.2005.02.001.
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    • Brashears, James H., Ganesh V. Raj, Alfonso Crisci, Matthew D. Young, Drew Dylewski, Rendon Nelson, John F. Madden, and Thomas J. Polascik. “Renal cryoablation and radio frequency ablation: an evaluation of worst case scenarios in a porcine model.” J Urol 173, no. 6 (June 2005): 2160–65. https://doi.org/10.1097/01.ju.0000158125.80981.f1.
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    • Raj, Ganesh V., Jeffrey A. Sekula, Rishu Guo, John F. Madden, and Yehia Daaka. “Lysophosphatidic acid promotes survival of androgen-insensitive prostate cancer PC3 cells via activation of NF-kappaB.” Prostate 61, no. 2 (October 1, 2004): 105–13. https://doi.org/10.1002/pros.20083.
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    • Gong, Jerald Z., Matthew J. Snyder, Anand S. Lagoo, Robin T. Vollmer, Raj R. Dash, John F. Madden, Patrick J. Buckley, and Claudia K. Jones. “Diagnostic impact of core-needle biopsy on fine-needle aspiration of non-Hodgkin lymphoma.” Diagn Cytopathol 31, no. 1 (July 2004): 23–30. https://doi.org/10.1002/dc.20082.
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    • Madden, John F., James L. Burchette, and Laura P. Hale. “Pathology of parainfluenza virus infection in patients with congenital immunodeficiency syndromes.” Hum Pathol 35, no. 5 (May 2004): 594–603. https://doi.org/10.1016/j.humpath.2003.11.012.
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    • Su, Zhen, Jens Dannull, Axel Heiser, Donna Yancey, Scott Pruitt, John Madden, Doris Coleman, Donna Niedzwiecki, Eli Gilboa, and Johannes Vieweg. “Immunological and clinical responses in metastatic renal cancer patients vaccinated with tumor RNA-transfected dendritic cells.” Cancer Res 63, no. 9 (May 1, 2003): 2127–33.
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    • Taub, Jason S., Rishu Guo, LM Fredrik Leeb-Lundberg, John F. Madden, and Yehia Daaka. “Bradykinin receptor subtype 1 expression and function in prostate cancer.” Cancer Res 63, no. 9 (May 1, 2003): 2037–41.
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    • Lallas, Costas D., Brian K. Auge, Ganesh V. Raj, Robert Santa-Cruz, John F. Madden, and Glenn M. Preminger. “Laser Doppler flowmetric determination of ureteral blood flow after ureteral access sheath placement.” J Endourol 16, no. 8 (October 2002): 583–90. https://doi.org/10.1089/089277902320913288.
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    • Layfield, L. J., H. Cramer, J. Madden, E. V. Gopez, and K. Liu. “Atypical squamous epithelium in cytologic specimens from the pancreas: cytological differential diagnosis and clinical implications.” Diagn Cytopathol 25, no. 1 (July 2001): 38–42. https://doi.org/10.1002/dc.1099.
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    • Hale, L. P., D. T. Price, L. M. Sanchez, W. Demark-Wahnefried, and J. F. Madden. “Zinc alpha-2-glycoprotein is expressed by malignant prostatic epithelium and may serve as a potential serum marker for prostate cancer.” Clin Cancer Res 7, no. 4 (April 2001): 846–53.
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    • Raj, G. V., S. K. Pruitt, S. Lilly, J. T. Madden, and D. T. Price. “Multimodal therapy for stage IV adult Wilms tumor.” J Urol 165, no. 4 (April 2001): 1202.
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    • Sekula, J. J., R. P. Liao, J. Madden, and D. T. Price. “Transitional cell carcinoma in a prostatic remnant 10 years after radical cystectomy.” J Urol 165, no. 4 (April 2001): 1222.
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    • Selzner, M., H. A. Rüdiger, D. Sindram, J. Madden, and P. A. Clavien. “Mechanisms of ischemic injury are different in the steatotic and normal rat liver.” Hepatology (Baltimore, Md.) 32, no. 6 (December 2000): 1280–88. https://doi.org/10.1053/jhep.2000.20528.
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    • Cummings, T. J., J. F. Madden, L. Gray, A. H. Friedman, and R. E. McLendon. “Parasitic lesion of the insula suggesting cerebral sparganosis: case report.” Neuroradiology 42, no. 3 (March 2000): 206–8. https://doi.org/10.1007/s002340050047.
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    • Xu, J., C. M. Boyd, E. Livingston, W. Meyer, J. F. Madden, and T. G. Mitchell. “Species and genotypic diversities and similarities of pathogenic yeasts colonizing women.” J Clin Microbiol 37, no. 12 (December 1999): 3835–43. https://doi.org/10.1128/JCM.37.12.3835-3843.1999.
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    • Liu, K., L. G. Dodd, B. M. Osborne, S. Martinez, B. A. Olatdioye, and J. F. Madden. “Diagnosis of anaplastic large-cell lymphoma, including multifocal osseous KI-1 lymphoma, by fine-needle aspiration biopsy.” Diagn Cytopathol 21, no. 3 (September 1999): 174–79. https://doi.org/10.1002/(sici)1097-0339(199909)21:3<174::aid-dc6>3.0.co;2-q.
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    • Sindram, D., V. Kohli, J. F. Madden, and P. A. Clavien. “Calpain inhibition prevents sinusoidal endothelial cell apoptosis in the cold ischemic rat liver.” Transplantation 68, no. 1 (July 15, 1999): 136–40. https://doi.org/10.1097/00007890-199907150-00025.
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    • Liu, K., J. F. Madden, B. A. Olatidoye, and L. G. Dodd. “Features of benign granular cell tumor on fine needle aspiration.” Acta Cytol 43, no. 4 (July 1999): 552–57. https://doi.org/10.1159/000331146.
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    • Kohli, V., M. Selzner, J. F. Madden, R. C. Bentley, and P. A. Clavien. “Endothelial cell and hepatocyte deaths occur by apoptosis after ischemia-reperfusion injury in the rat liver.” Transplantation 67, no. 8 (April 27, 1999): 1099–1105. https://doi.org/10.1097/00007890-199904270-00003.
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    • Cegielski, J. P., Y. R. Ortega, S. McKee, J. F. Madden, L. Gaido, D. A. Schwartz, K. Manji, et al. “Cryptosporidium, enterocytozoon, and cyclospora infections in pediatric and adult patients with diarrhea in Tanzania.” Clin Infect Dis 28, no. 2 (February 1999): 314–21. https://doi.org/10.1086/515131.
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    • Kohli, V., J. F. Madden, R. C. Bentley, and P. A. Clavien. “Calpain mediates ischemic injury of the liver through modulation of apoptosis and necrosis.” Gastroenterology 116, no. 1 (January 1999): 168–78. https://doi.org/10.1016/s0016-5085(99)70241-6.
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    • Gao, W., R. C. Bentley, J. F. Madden, and P. A. Clavien. “Apoptosis of sinusoidal endothelial cells is a critical mechanism of preservation injury in rat liver transplantation.” Hepatology 27, no. 6 (June 1998): 1652–60. https://doi.org/10.1002/hep.510270626.
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    • Sindram, D., R. J. Porte, M. Hoffman, J. F. Madden, and P. A. Clavien. “Platelets induce endothelial cell apoptosis upon reperfusion following cold ischemia in rat liver.” European Journal of Gastroenterology and Hepatology 10, no. 12 (January 1, 1998): A56. https://doi.org/10.1097/00042737-199812000-00184.
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    • Camargo, C. A., J. F. Madden, W. Gao, R. S. Selvan, and P. A. Clavien. “Interleukin-6 protects liver against warm ischemia/reperfusion injury and promotes hepatocyte proliferation in the rodent.” Hepatology 26, no. 6 (December 1997): 1513–20. https://doi.org/10.1002/hep.510260619.
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    • Phillips, H. K., L. J. Harrell, and J. F. Madden. “Microscopic screening of respiratory specimens submitted for culture: A re-evaluation.” Clinical Infectious Diseases 25, no. 2 (December 1, 1997): 400.
    • Kanj, S. S., V. Tapson, R. D. Davis, J. Madden, and I. Browning. “Infections in patients with cystic fibrosis following lung transplantation.” Chest 112, no. 4 (October 1997): 924–30. https://doi.org/10.1378/chest.112.4.924.
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    • Owen, C. H., J. F. Madden, and P. A. Clavien. “Spindle cell stromal tumor of the pancreas: treatment by pancreatoduodenectomy.” Surgery 122, no. 1 (July 1997): 105–11. https://doi.org/10.1016/s0039-6060(97)90271-3.
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    • Moffatt, E. J., B. J. Kerns, J. M. Madden, and L. J. Layfield. “Prognostic factors for fibromatoses: a correlation of proliferation index, estrogen receptor, p53, retinoblastoma, and src gene products and clinical features with outcome.” J Surg Oncol 65, no. 2 (June 1997): 117–22. https://doi.org/10.1002/(sici)1096-9098(199706)65:2<117::aid-jso8>3.0.co;2-a.
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    • Frush, D. P., M. A. Kliewer, and J. F. Madden. “Testicular microlithiasis and subsequent development of metastatic germ cell tumor.” Ajr Am J Roentgenol 167, no. 4 (October 1996): 889–90. https://doi.org/10.2214/ajr.167.4.8819375.
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    • Morris, A. J., T. C. Byrne, J. F. Madden, and L. B. Reller. “Duration of incubation of fungal cultures.” J Clin Microbiol 34, no. 6 (June 1996): 1583–85. https://doi.org/10.1128/JCM.34.6.1583-1585.1996.
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    • Kanj, S. S., K. Welty-Wolf, J. Madden, V. Tapson, M. A. Baz, R. D. Davis, and J. R. Perfect. “Fungal infections in lung and heart-lung transplant recipients. Report of 9 cases and review of the literature.” Medicine (Baltimore) 75, no. 3 (May 1996): 142–56. https://doi.org/10.1097/00005792-199605000-00004.
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    • Lirng, J. F., R. D. Tien, A. K. Osumi, J. F. Madden, R. P. McLendon, and D. Sexton. “Cerebral phaeohyphomycosis complicated with brain abscess: a case report.” Zhonghua Yi Xue Za Zhi (Taipei) 55, no. 6 (June 1995): 491–95.
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    • Lomasney, L. M., J. F. Madden, W. S. Rizk, L. W. Hedlund, S. Martinez, R. E. Coleman, W. J. Richardson, and H. D. Sostman. “Dynamic contrast-enhanced MR imaging assessment of vascularized free fibular grafts.” J Magn Reson Imaging 4, no. 3 (May 1994): 441–49. https://doi.org/10.1002/jmri.1880040333.
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    • Tien, R. D., A. Osumi, J. W. Oakes, J. F. Madden, and P. C. Burger. “Meningioangiomatosis: CT and MR findings.” J Comput Assist Tomogr 16, no. 3 (May 1992): 361–65.
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    • Han, S. H., J. F. Madden, L. M. Siegel, and T. G. Spiro. “Resonance Raman studies of Escherichia coli sulfite reductase hemoprotein. 3. Bound ligand vibrational modes.” Biochemistry 28, no. 13 (June 27, 1989): 5477–85. https://doi.org/10.1021/bi00439a024.
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    • Han, S. H., J. F. Madden, R. G. Thompson, S. H. Strauss, L. M. Siegel, and T. G. Spiro. “Resonance Raman studies of Escherichia coli sulfite reductase hemoprotein. 1. Siroheme vibrational modes.” Biochemistry 28, no. 13 (June 27, 1989): 5461–71. https://doi.org/10.1021/bi00439a022.
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    • Madden, J. F., S. H. Han, L. M. Siegel, and T. G. Spiro. “Resonance Raman studies of Escherichia coli sulfite reductase hemoprotein. 2. Fe4S4 cluster vibrational modes.” Biochemistry 28, no. 13 (June 27, 1989): 5471–77. https://doi.org/10.1021/bi00439a023.
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  • Other Articles

    • Mayes, J. M., V. Mouraviev, L. Sun, J. F. Madden, and T. J. Polascik. “WITHDRAWN: Can the conventional sextant prostate biopsy reliably diagnose unilateral prostate cancer in low-risk, localized, prostate cancer?” Prostate Cancer Prostatic Dis, May 13, 2008. https://doi.org/10.1038/pcan.2008.31.
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  • Conference Papers

    • Telang, P. R., A. K. Kalia, J. F. Madden, and M. P. Singh. “Combining practical and dialectical commitments for service engagements.” In Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 9435:3–18, 2015. https://doi.org/10.1007/978-3-662-48616-0_1.
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    • Miller, Z. A., M. L. Palmeri, S. J. Rosenzweig, T. J. Glass, K. R. Nightingale, T. J. Polascik, A. Buck, and J. Madden. “3D in vivo ARFI imaging: Prostate cancer sensitivity.” In Ieee International Ultrasonics Symposium, Ius, 209–12, 2014. https://doi.org/10.1109/ULTSYM.2014.0053.
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    • Rosenzweig, S., M. Palmeri, N. Rouze, S. Lipman, E. Kulbacki, J. Madden, T. Polascik, and K. Nightingale. “Comparison of concurrently acquired in vivo 3D ARFI and SWEI images of the prostate.” In Ieee International Ultrasonics Symposium, Ius, 97–100, 2012. https://doi.org/10.1109/ULTSYM.2012.0024.
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    • Hsu, C. M. L., T. J. Polascik, M. S. Davenport, C. Kauffman, R. T. Gupta, E. Kulbacki, J. Madden, S. L. Lipman, M. L. Palmeri, and K. R. Nightingale. “Methodology to register prostate B-mode and ARFI images to MR and histology.” In Ieee International Ultrasonics Symposium, Ius, 1866–69, 2011. https://doi.org/10.1109/ULTSYM.2011.0466.
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    • Zhai, L., J. Madden, V. Mouraviev, T. Polascik, and K. Nightingale. “Correlation between SWEI and ARFI image findings in ex vivo human prostates.” In Proceedings  Ieee Ultrasonics Symposium, 523–26, 2009. https://doi.org/10.1109/ULTSYM.2009.5441796.
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    • Zhai, L., J. Dahl, J. Madden, V. Mouraviev, T. Polascik, M. Palmeri, and K. Nightingale. “Three-dimensional acoustic radiation force impulse (ARFI) imaging of human prostates in vivo.” In Proceedings  Ieee Ultrasonics Symposium, 540–43, 2008. https://doi.org/10.ll09/ULTSYM.2008.0131.
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    • Zhai, L., J. Madden, V. Mouraviev, T. Polascik, and K. Nightingale. “Visualizing the anatomic structures of human prostates using Acoustic Radiation Force Impulse (ARFI) imaging.” In Proceedings  Ieee Ultrasonics Symposium, 432–35, 2007. https://doi.org/10.1109/ULTSYM.2007.117.
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