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Junjie Yao

Jeffrey N. Vinik Associate Professor of Biomedical Engineering
Biomedical Engineering
Room 1427, Fitzpatrick CIEMAS, 101 Science Drive, PO Box 90281, Durham, NC 27708
Hudson Hall Annex 261, Durham, NC 27708
Office hours Monday to Friday: 9:30 am to 6:00 pm (walk-in welcome)  

Scholarly Works - Conferences


Whole-Body Functional and Molecular Imaging by Integrated Photoacoustic and Ultrasound Imaging

Conference Proceedings of SPIE the International Society for Optical Engineering · March 5, 2026 The complexity of biomedical research, particularly studies of brain activity, the tumor microenvironment, and aging, demands imaging technologies capable of concurrently revealing multiple aspects of tissue pathology and physiology. Traditional single-mod ... Full text Cite

Time-resolved passive cavitation mapping using the transient angular spectrum approach

Conference The Journal of the Acoustical Society of America · March 1, 2023 Featured Publication Passive cavitation mapping (PCM), which generates images using bubble acoustic emission signals, has been increasingly used for monitoring and guiding focused ultrasound surgery. This study investigates a transient angular spectrum (AS) approach fo ... Full text Cite

Deep-tissue photoacoustic imaging of photoswitchable transgenic mouse models

Conference The Journal of the Acoustical Society of America · March 1, 2023 Compared with visible light, near-infrared (NIR) light (700–1300 nm) is capable of deep-tissue penetration because of low tissue attenuation, and thus holds great promise for deep-tissue optical manipulation and imaging. In this work, we take advan ... Full text Cite

Real-time passive cavitation mapping with high spatial-temporal resolution

Conference The Journal of the Acoustical Society of America · March 1, 2023 Shock wave lithotripsy (SWL) and laser lithotripsy (LL) have been widely used for clinical treatment of kidney stones. Cavitation plays an important role in stone fragmentation in both SWL and LL, yet it may also contribute to renal tissue injury. ... Full text Cite

SwinIR for Photoacoustic Computed Tomography Artifact Reduction

Conference IEEE International Ultrasonics Symposium Ius · January 1, 2023 Photoacoustic (PA) imaging is an emerging hybrid medical imaging modality involving the optical excitation of chromophores - light-sensitive molecules like hemoglobin and lipids, to infer underlying vascular structure. Supplying them energy in the form of ... Full text Cite

Tumour classification with optimized sliding window size for OCT imaging

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · January 1, 2022 Skin and subcutaneous tumors are widespread in dogs and cats. Current tumor diagnostics (e.g., biopsy, fine-needle cytology) is invasive and labor-consuming. In this work, we studied ex vivo the most common canine and feline tumor OCT images using sliding ... Full text Cite

Fiber based laser ultrasound transducer for intravascular thrombolysis with detective photoacoustic imaging

Conference IEEE International Ultrasonics Symposium Ius · September 7, 2020 Featured Publication Ultrasound-enhanced thrombolysis, or sonothrombolysis, has been actively investigated due to its relatively high efficiency and better safeness compared with traditional thrombolysis methods such as mechanical thrombectomy and pharmaceutical treatment. Mos ... Full text Cite

Ultrasfast Wide-field Photoacoustic Microscopy of Small-animal Models

Conference 2020 IEEE Photonics Conference IPC 2020 Proceedings · September 1, 2020 Featured Publication We present our recent progress on a super-fast photoacoustic microscopy with an ultra-wide field of view. By using a novel polygon mirror scanner that can be immersed in water, we have achieved a B-scan frame rate of 2000 Hz with a scanning range of at lea ... Full text Cite

Internal-Illumination Photoacoustic Tomography Enhanced by a Graded-scattering Fiber Diffuser

Conference 2020 IEEE Photonics Conference IPC 2020 Proceedings · September 1, 2020 Featured Publication We developed a new low-cost fiber diffuser based on a graded-scattering method and uniform light emission was achieved by performing numerical simulations on several key design parameters. Proof-of-concept studies on phantoms and swine model have demonstra ... Full text Cite

Abstract 5243: Averting tumor growth in rodent breast cancer models with a liquid ablation approach

Conference Cancer Research · August 15, 2020 AbstractIn low-resource settings, surgery or radiation are inaccessible to 90% of cancer patients due to inadequate infrastructure and lack of trained personnel. Resource appropriate technologies must be dev ... Full text Cite

Acoustic Detection of Blunt-Induced Cavitation in the Head

Conference Conference Proceedings International Research Council on the Biomechanics of Injury Ircobi · January 1, 2020 The occurrence of cavitation in the brain from blunt impact is difficult to investigate and remains controversial. The objective of this study was to investigate cavitation formation from blunt impact, without compromising the cranial cavity, using novel a ... Cite

Fiber-optic laser-ultrasound transducer using carbon nanoparticles for intravascular sonothrombolysis

Conference Proceedings of the IEEE Conference on Nanotechnology · July 1, 2019 Intravascular ultrasound thrombolysis has shown its advantages in the improved treatment rate compared with traditional administration of thrombolytic agents, and a safer treatment procedure compared with mechanical drilling methods. However, the method st ... Full text Cite

2219-PUB: Antioxidant Protective Effect and Mechanism of Selenoprotein S in Diabetic Vascular Endothelium-Mimicking Microenvironment

Conference Diabetes · June 1, 2019 Endothelial dysfunction is an initiating key step for diabetic macrovascular complications, and it is closely related to the hemodynamic microenvironment in vivo. However, diabetic patients usually coexist with other cardiovascular risk factors, an ... Full text Cite

Numerical simulation of temperature-induced structural strain for a long-span suspension bridge

Conference Nondestructive Characterization and Monitoring of Advanced Materials, Aerospace, Civil Infrastructure, and Transportation XIII · April 1, 2019 Full text Cite

In vivo photoacoustic multi-contrast imaging and detection of protein interactions using a small near-infrared photochromic protein

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · January 1, 2019 Photoacoustic (PA) computed tomography (PACT) is a non-invasive imaging technique offering optical contrast, high resolution, and deep penetration in biological tissues. PACT, highly sensitive to optical absorption by molecules, is inherently suited for mo ... Full text Cite

Application of mathematical morphological filter for noise reduction in photoacoustic imaging

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · January 1, 2019 Photoacoustic imaging (PAI) is a promising imaging technique in preclinical study, which combines both merits of optical and ultrasound imaging. However, PA image quality is seriously suffered from various noises such as random white noise, intrinsic noise ... Full text Cite

High-speed wide-field photoacoustic microscopy

Conference Optics Infobase Conference Papers · January 1, 2018 We present our recent progress on a super-fast photoacoustic microscopy with an ultrawide field of view. By using a novel polygon mirror scanner that can be immersed in water, we have achieved a B-scan frame rate of 1000 Hz with a scanning range of at leas ... Full text Cite

A Review of Industrial Heat Exchange Optimization

Conference IOP Conference Series: Earth and Environmental Science · January 2018 Full text Cite

Wide-field fast-scanning photoacoustic microscopy of brain functions in action

Conference 2017 Conference on Lasers and Electro Optics CLEO 2017 Proceedings · October 25, 2017 We have developed fast functional photoacoustic microscopy for 3D high- resolution high-speed imaging of the mouse brain. In particular, a novel single-wavelength pulse- width-based method can image blood oxygenation with capillary-level resolution at 100 ... Full text Cite

Real-time photoacoustic flow cytography and photothermolysis of single circulating melanoma cells in vivo

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · January 1, 2017 Metastasis is responsible for as many as 90% of cancer-related deaths, and the deadliest skin cancer, melanoma, has a high propensity for metastasis. Since hematogenous spread of circulating tumor cells (CTCs) is cancer's main route of metastasis, detectin ... Full text Cite

Imaging small animal whole-body dynamics by single-impulse panoramic photoacoustic computed tomography

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · January 1, 2017 Small animal whole-body imaging, providing physiological, pathological, and phenotypical insights into biological processes, is indispensable in preclinical research. With high spatiotemporal resolution and functional contrast, small animal imaging can vis ... Full text Cite

Reversibly switchable photoacoustic tomography using a genetically encoded near-infrared phytochrome

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · March 18, 2016 Optical imaging of genetically encoded probes has revolutionized biomedical studies by providing valuable information about targeted biological processes. Here, we report a novel imaging technique, termed reversibly switchable photoacoustic tomography (RS- ... Full text Cite

Fast functional photoacoustic microscopy of mouse brain

Conference Optics and the Brain Brain 2015 · April 6, 2015 We have developed fast functional photoacoustic microscopy (ffPAM). which can be utilized for three-dimensional morphological, functional, flow dynamic and metabolic mouse brain imaging through an intact skull with endogenous contrast only. ... Full text Cite

Photoacoustic imaging of single circulating melanoma cells in vivo

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · March 11, 2015 Melanoma, one of the most common types of skin cancer, has a high mortality rate, mainly due to a high propensity for tumor metastasis. The presence of circulating tumor cells (CTCs) is a potential predictor for metastasis. Label-free imaging of single cir ... Full text Cite

Photo-imprint super-resolution photoacoustic microscopy

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · March 11, 2015 Combining the absorption-based photoacoustic effect and intensity-dependent photobleaching effect, we demonstrate a simple method for super-resolution photoacoustic imaging of both fluorescent and non-fluorescent samples. Our method is based on a double-ex ... Full text Cite

Label-free optical-resolution photoacoustic endomicroscopy in vivo

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · March 11, 2015 Intravital microscopy techniques have become increasingly important in biomedical research because they can provide unique microscopic views of various biological or disease developmental processes in situ. Here we present an optical-resolution photoacoust ... Full text Cite

Three-dimensional photoacoustic and ultrasonic endoscopic imaging of two rabbit esophagi

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · March 11, 2015 The addition of photoacoustic endoscopy to conventional endoscopic ultrasound offers imaging capabilities that may improve diagnosis and clinical care of gastrointestinal tract diseases. In this study, using a 3.8-mm diameter dual-mode photoacoustic and ul ... Full text Cite

Fast functional photoacoustic microscopy of mouse brain

Conference Optics and the Brain, BRAIN 2015 · January 1, 2015 © OSA 2015. We have developed fast functional photoacoustic microscopy (ffPAM). which can be utilized for three-dimensional morphological, functional, flow dynamic and metabolic mouse brain imaging through an intact skull with endogenous contrast only. ... Cite

Quantitative evaluation of complex electromagnetic environment complexity based on a method of the cosine vector included angle

Conference PROCEEDINGS OF 2015 IEEE 12TH INTERNATIONAL CONFERENCE ON ELECTRONIC MEASUREMENT & INSTRUMENTS (ICEMI), VOL. 1 · 2015 Link to item Cite

Photoacoustic Doppler axial flow measurement of homogenous media using structured illumination

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · March 3, 2014 We propose time and frequency domain methods for homogenous flow measurement based on the photoacoustic Doppler effect. Excited by spatially modulated laser pulses, the flowing medium induces a Doppler frequency shift in the received photoacoustic signals. ... Full text Cite

Photoacoustic microscopy with enhanced resolution and imaging depth aided by optical clearing

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · March 3, 2014 Both the spatial resolution and maximum penetration depth of optical-resolution photoacoustic microscopy (ORPAM) deteriorate sharply with depth due to strong light scattering in tissue. To reduce tissue scattering, we propose to use glycerol as an optical ... Full text Cite

Photoacoustic correlation spectroscopy for calibration-free absolute quantification of particle concentration

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · January 1, 2014 Currently, laser fluence calibration is typically required for quantitative measurement of particle concentration in photoacoustic microscopy. In this paper, we present another quantitative approach to measure absolute absorber concentrations by photoacous ... Full text Cite

Multi-parametric quantitative microvascular imaging with optical-resolution photoacoustic microscopy in vivo.

Conference Optics express · January 2014 Many diseases involve either the formation of new blood vessels (e.g., tumor angiogenesis) or the damage of existing ones (e.g., diabetic retinopathy) at the microcirculation level. Optical-resolution photoacoustic microscopy (OR-PAM), capable of imaging m ... Full text Cite

Photoacoustic microscopy of neovascularization in three-dimensional porous scaffolds

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · May 28, 2013 It is a challenge to non-invasively visualize in vivo the neovascularization in a three-dimensional (3D) scaffold with high spatial resolution and deep penetration depth. Here we used photoacoustic microscopy (PAM) to chronically monitor neovascularization ... Full text Cite

Noninvasive photoacoustic computed tomography of mouse brain metabolism in vivo

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · May 28, 2013 To control the overall action of the body, brain consumes a large amount of energy in proportion to its volume. In humans and many other species, the brain gets most of its energy from oxygen-dependent metabolism of glucose. An abnormal metabolic rate of g ... Full text Cite

Water-Immersible MEMS scanning mirror designed for wide-field fast-scanning photoacoustic microscopy

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · May 28, 2013 By offering images with high spatial resolution and unique optical absorption contrast, optical-resolution photoacoustic microscopy (OR-PAM) has gained increasing attention in biomedical research. Recent developments in OR-PAM have improved its imaging spe ... Full text Cite

A water-immersible 2-Axis scanning mirror microsystem for ultrasound and photoacoustic microscopic imaging applications

Conference Proceedings of SPIE the International Society for Optical Engineering · March 13, 2013 For both ultrasound and photoacoustic microscopic imaging, a fast scanning ability is required, whereas the liquid environment for acoustic propagation limits the usage of traditional MEMS scanning mirrors. In this paper, a new waterimmersible scanning mir ... Full text Cite

Photoacoustic microscopy with 7.6-μm axial resolution

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · March 4, 2013 The axial resolution of photoacoustic microscopy (PAM) is much lower than its lateral resolution, which resolves down to the submicron level. Here we achieved so far the highest axial resolution of 7.6 μm by using a commercial 125 MHz ultrasonic transducer ... Full text Cite

Photoacoustic endoscopic imaging of the rabbit mediastinum

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · March 4, 2013 Like ultrasound endoscopy, photoacoustic endoscopy (PAE) could become a valuable addition to clinical practice due to its deep imaging capability. Results from our recent in vivo transesophageal endoscopic imaging study on rabbits demonstrate the technique ... Full text Cite

Multi-scale Multi-contrast Photoacoustic Microscopy

Conference Optics InfoBase Conference Papers · January 1, 2013 Photoacoustic microscopy (PAM) is a hybrid imaging technique that acoustically detects optical contrast via the photoacoustic effect. With its excellent scalability, PAM can simultaneously image anatomical, functional, molecular, flow dynamic, and metaboli ... Cite

Multi-scale Multi-contrast Photoacoustic Microscopy

Conference Optics Infobase Conference Papers · January 1, 2013 Photoacoustic microscopy (PAM) is a hybrid imaging technique that acoustically detects optical contrast via the photoacoustic effect. With its excellent scalability, PAM can simultaneously image anatomical, functional, molecular, flow dynamic, and metaboli ... Full text Cite

Volumetric photoacoustic endoscopy

Conference Biomedical Optics Biomed 2012 · December 1, 2012 Photoacoustic endoscopy provides unique functional information through its broad spectroscopic imaging capability. The imaging results presented here suggest its potential for use as a comprehensive endoscopic tool in various medical applications. © 2012 O ... Cite

Abstract 356: Photoacoustic imaging of pancreatic cancer proliferation via sigma-2 receptor/PGRMC1-eYFP

Conference Cancer Research · April 15, 2012 AbstractSigma-2 receptor binding sites, recently identified as progesterone receptor membrane component 1 (PGRMC1) (Nature Communications, 2011; 2:380), are highly expressed in tumor cells. We have previousl ... Full text Cite

Toward dual-wavelength functional photoacoustic endoscopy: Laser and peripheral optical systems development

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · April 9, 2012 Photoacoustic endoscopy (PAE) provides unique functional information with high spatial resolution at super depths. The provision of functional information is predicated on its strong spectroscopic imaging ability, and its deep imaging capability is derived ... Full text Cite

Multi-contrast photoacoustic microscopy

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · March 15, 2012 We developed multi-contrast photoacoustic microscopy (PAM) for in vivo anatomical, functional, metabolic, and molecular imaging. This technical innovation enables comprehensive understanding of the tumor microenvironment. With multi-contrast PAM, we longit ... Full text Cite

Double-illumination photoacoustic microscopy of intestinal hemodynamics following massive small bowel resection

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · February 23, 2012 Massive small bowel resection (SBR) results in villus angiogenesis and intestinal adaptation. The exact mechanism that causes intestinal villus angiogenesis remains unknown. We hypothesize that hemodynamic changes within the remnant bowel after SBR will tr ... Full text Cite

In vivo photoacoustic tomography of total blood flow and Doppler angle

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · February 23, 2012 As two hallmarks of cancer, angiogenesis and hypermetabolism are closely related to increased blood flow. Volumetric blood flow measurement is important to understanding the tumor microenvironment and developing new means to treat cancer. Current photoacou ... Full text Cite

Functional photoacoustic microscopy of pH

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · February 23, 2012 pH is a tightly regulated indicator of metabolic activity. In mammalian systems, imbalance of pH regulation may result from or result in serious illness. Even though the regulation system of pH is very robust, tissue pH can be altered in many diseases such ... Full text Cite

A 2.5-mm outer diameter photoacoustic endoscopic mini-probe based on a highly sensitive PMN-PT ultrasonic transducer

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · February 23, 2012 We have developed a 2.5-mm outer diameter photoacoustic endoscopic mini-probe to use in the instrument channel (typically 2.8 or 3.7 mm in diameter) of standard video endoscopes. To achieve adequate signal sensitivity, we fabricated a focused ultrasonic tr ... Full text Cite

Photoacoustic imaging of the near-infrared fluorescent protein iRFP in vivo

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · February 9, 2012 Genetically encoded probes powerfully and non-invasively target specific tissues, cells, and subcellular locations. iRFP, a novel near-infrared fluorescent protein with low quantum yield whose absorption and fluorescence maxima are located at wavelengths l ... Full text Cite

Water-Immersible MEMS scanning mirror enhanced optical-resolution photoacoustic microscopy

Conference Biomedical Optics Biomed 2012 · January 1, 2012 A fast scanning optical-resolution photoacoustic microscopy has been developed using a water-immersible MEMS mirror. A B-scan rate of 400 Hz over a 3 mm scanning range has been demonstrated in phantom studies. © OSA 2012. ... Full text Cite

Photoacoustic microscopy of human teeth

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · March 31, 2011 Photoacoustic microscopy (PAM) utilizes short laser pulses to deposit energy into light absorbers and sensitively detects the ultrasonic waves the absorbers generate in response. PAM directly renders a three-dimensional spatial distribution of sub-surface ... Full text Cite

Noninvasive quantification of metabolic rate of oxygen (MRO2) by photoacoustic microscopy

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · February 17, 2011 Many diseases, normal decay and physiological functions are closely related to alterations in the metabolic rate of oxygen (MRO2). In this study, we demonstrate that all the parameters for MRO2 quantification can be simultaneously obt ... Full text Cite

Tyrosinase-catalyzed melanin as a contrast agent for photoacoustic tomography

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · February 10, 2011 It is difficult to distinguish between tumor cells and surrounding cells without staining as is done in histology. We developed tyrosinase-catalyzed melanin as a reporter gene for photoacoustic tomography. Tyrosinase is the primary enzyme responsible for t ... Full text Cite

Effects of calibration factors and intensity dependent non-linearity on functional photoacoustic microscopy

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · February 10, 2011 Functional photoacoustic microscopy is a valuable tool in quantifying hemoglobin oxygenation within single vessels. In several functional studies with this tool, quantitative sO2 measurements were taken both in vitro and in vivo. Although in vit ... Full text Cite

Development of real-time photoacoustic microscopy

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · February 10, 2011 Photoacoustic tomography detecting ultrasound signals generated from photon absorption provides optical absorption contrast in vivo for structural, functional and molecular imaging. Although photoacoustic tomography technology has grown fast in recent year ... Full text Cite

Photoacoustic microscopy using Evans Blue dye as a contrast agent

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · February 23, 2010 Complete and continuous imaging of microvascular networks is crucial for a wide variety of biomedical applications. Photoacoustic tomography can provide high resolution microvascular imaging using hemoglobin within red blood cells (RBC) as an endogenous co ... Full text Cite

Invasive and transcranial photoacoustic imaging of the vascular response to brain electrical stimulation

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · February 12, 2010 Advances in the brain functional imaging greatly facilitated the understanding of neurovascular coupling. For monitoring of the microvascular response to the brain electrical stimulation in vivo we used optical-resolution photoacoustic microscopy (OR-PAM) ... Full text Cite

Transverse flow measurement using photoacoustic Doppler bandwidth broadening: Phantom and in vivo studies

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · February 11, 2010 In photoacoustic (PA) imaging of microvascular networks, the transverse component of the blood flow that is perpendicular to the acoustic probing beam is usually dominant. We propose a new method to measure the transverse flow, based on the Doppler bandwid ... Full text Cite

Optical-resolution photoacoustic microscopy of angiogenesis in a transgenic mouse model

Conference Progress in Biomedical Optics and Imaging Proceedings of SPIE · February 11, 2010 A major obstacle in studying angiogenesis is the inability to noninvasively image neovascular development in an individual animal. We applied optical-resolution photoacoustic microscopy (OR-PAM) to determine the kinetics of hypoxia-inducible factor-1 (HIF- ... Full text Cite

Disposal of MCG-signal Based on Interpolation Methods

Conference PROCEEDINGS OF THE THIRD INTERNATIONAL SYMPOSIUM ON TEST AUTOMATION & INSTRUMENTATION, VOLS 1 - 4 · 2010 Link to item Cite

Fluorescent optical imaging of small animals using filtered back-projection 3D surface reconstruction method

Conference Biomedical Engineering and Informatics New Development and the Future Proceedings of the 1st International Conference on Biomedical Engineering and Informatics Bmei 2008 · January 1, 2008 The CCD-based non-contact fluorescent optical imaging has got a promising progress in recent years. This imaging modality needs the 3D surface of the small animal, which is used for the forward model and inverse reconstruction. We propose a new 3D surface ... Full text Cite