Shixin Xu | Scholars@Duke

Shixin Xu
Assistant Professor of Mathematics at Duke Kunshan University

Current Research Interests

Mathematical Modeling for Complex Fluid in Biology and Physics, Energy Variation Method, Fluid-Structure Interaction, Model-Based Machine Learning, Gaussian Process for Parameter Estimation, Cardio-Pulmonary Disease Modeling

Current Appointments & Affiliations

Assistant Professor of Mathematics at Duke Kunshan University, DKU Faculty, Duke Kunshan University 2019

Contact Information

Background
Education, Training, & Certifications
- Ph.D., University of Science and Technology of China (China) 2013
Expertise
Subject Headings
- Applied mathematics
Publications & Artistic Works
Selected Publications
- Academic Articles
  - Li, Shixuan, Ruiqi Pan, Arvind Gupta, Shixin Xu, Yibin Fang, and Huaxiong Huang. “Predicting the risk of rupture for vertebral aneurysm based on geometric features of blood vessels.” Royal Society Open Science 8, no. 8 (August 11, 2021): 210392. https://doi.org/10.1098/rsos.210392.
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  - Zhu, Yi, Shixin Xu, Robert S. Eisenberg, and Huaxiong Huang. “A tridomain model for potassium clearance in optic nerve of Necturus.” Biophysical Journal 120, no. 15 (August 2021): 3008–27. https://doi.org/10.1016/j.bpj.2021.06.020.
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  - Chen, Yu, Jin Cheng, Arvind Gupta, Huaxiong Huang, and Shixin Xu. “Numerical method for parameter inference of systems of nonlinear ordinary differential equations with partial observations.” Royal Society Open Science 8, no. 7 (July 28, 2021): 210171. https://doi.org/10.1098/rsos.210171.
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  - Zhu, Y., S. Xu, R. S. Eisenberg, and H. Huang. “Optic nerve microcirculation: Fluid flow and electrodiffusion.” Physics of Fluids 33, no. 4 (April 1, 2021). https://doi.org/10.1063/5.0046323.
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  - McCarthy, Zachary, Shixin Xu, Ashrafur Rahman, Nicola Luigi Bragazzi, Vicente F. Corrales-Medina, Jason Lee, Bruce T. Seet, et al. “Modelling the linkage between influenza infection and cardiovascular events via thrombosis.” Scientific Reports 10, no. 1 (August 31, 2020): 14264. https://doi.org/10.1038/s41598-020-70753-0.
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  - Xu, Shixin, Joshua C. Chang, Carson C. Chow, K. C. Brennan, and Huaxiong Huang. “A mathematical model for persistent post-CSD vasoconstriction.” Plos Computational Biology 16, no. 7 (July 15, 2020): e1007996. https://doi.org/10.1371/journal.pcbi.1007996.
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  - Shen, L., H. Huang, P. Lin, Z. Song, and S. Xu. “An energy stable C⁰ finite element scheme for a quasi-incompressible phase-field model of moving contact line with variable density.” Journal of Computational Physics 405 (March 15, 2020). https://doi.org/10.1016/j.jcp.2019.109179.
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  - Xu, Shixin, Minxin Chen, Chun Liu, Ran Zhang, and Xingye Yue. “Behavior of different numerical schemes for random genetic drift.” Bit Numerical Mathematics 59, no. 3 (September 2019): 797–821. https://doi.org/10.1007/s10543-019-00749-4.
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  - Liao, Mai-Jia, Ming-Tzo Wei, Shi-Xin Xu, H. Daniel Ou-Yang, and Ping Sheng. “Non-Stokes drag coefficient in single-particle electrophoresis: New insights on a classical problem.” Chinese Physics B 28, no. 8 (August 2019): 084701–084701. https://doi.org/10.1088/1674-1056/28/8/084701.
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  - Zhu, Yi, Shixin Xu, Robert S. Eisenberg, and Huaxiong Huang. “A Bidomain Model for Lens Microcirculation.” Biophysical Journal 116, no. 6 (March 2019): 1171–84. https://doi.org/10.1016/j.bpj.2019.02.007.
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  - Xu, S., X. Chen, C. Liu, and X. Yue. “Numerical method for multi-alleles genetic drift problem.” Siam Journal on Numerical Analysis 57, no. 4 (January 1, 2019): 1770–88. https://doi.org/10.1137/18M1211581.
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  - Xu, Shixin, Mark Alber, and Zhiliang Xu. “Three-phase Model of Visco-elastic Incompressible Fluid Flow and its Computational Implementation.” Communications in Computational Physics 25, no. 2 (January 2019): 586–624. https://doi.org/10.4208/cicp.oa-2017-0167.
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  - Zhao, Xiukun, Nathan Gold, Yibin Fang, Shixin Xu, Yongxin Zhang, Jianmin Liu, Arvind Gupta, and Huaxiong Huang. “Vertebral artery fusiform aneurysm geometry in predicting rupture risk.” Royal Society Open Science 5, no. 10 (October 31, 2018): 180780. https://doi.org/10.1098/rsos.180780.
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  - Xu, Shixin, Zhiliang Xu, Oleg V. Kim, Rustem I. Litvinov, John W. Weisel, and Mark Alber. “Model predictions of deformation, embolization and permeability of partially obstructive blood clots under variable shear flow.” Journal of the Royal Society, Interface 14, no. 136 (November 2017). https://doi.org/10.1098/rsif.2017.0441.
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  - Höök, Peter, Rustem I. Litvinov, Oleg V. Kim, Shixin Xu, Zhiliang Xu, Joel S. Bennett, Mark S. Alber, and John W. Weisel. “Strong Binding of Platelet Integrin αIIbβ3 to Fibrin Clots: Potential Target to Destabilize Thrombi.” Scientific Reports 7, no. 1 (October 11, 2017): 13001. https://doi.org/10.1038/s41598-017-12615-w.
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  - Zhang, Changjuan, Yun Bai, Shixin Xu, and Xingye Yue. “Homogenization for chemical vapor infiltration process.” Communications in Mathematical Sciences 15, no. 4 (2017): 1021–40. https://doi.org/10.4310/cms.2017.v15.n4.a5.
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  - Xu, Shixin, and Weiqing Ren. “Reinitialization of the Level-Set Function in 3d Simulation of Moving Contact Lines.” Communications in Computational Physics 20, no. 5 (November 2016): 1163–82. https://doi.org/10.4208/cicp.210815.180316a.
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  - Xu, Shixin, Xingye Yue, and Changrong Zhang. “Homogenization: In mathematics or physics?” Discrete and Continuous Dynamical Systems Series S 9, no. 5 (October 2016): 1575–90. https://doi.org/10.3934/dcdss.2016064.
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  - Liao, Maijia, Li Wan, Shixin Xu, Chun Liu, and Ping Sheng. “The Poisson–Boltzmann equation and the charge separation phenomenon at the silica-water interface: A holistic approach.” Annals of Mathematical Sciences and Applications 1, no. 1 (2016): 217–49. https://doi.org/10.4310/amsa.2016.v1.n1.a7.
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  - Xu, Shixin, and Xingye Yue. “Homogenization of thermal-hydro-mass transfer processes.” Discrete & Continuous Dynamical Systems S 8, no. 1 (2015): 55–76. https://doi.org/10.3934/dcdss.2015.8.55.
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  - Zhang, Zhen, Shixin Xu, and Weiqing Ren. “Derivation of a continuum model and the energy law for moving contact lines with insoluble surfactants.” Physics of Fluids 26, no. 6 (June 2014): 062103–062103. https://doi.org/10.1063/1.4881195.
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  - Xu, Shixin, Minxin Chen, Sheereen Majd, Xingye Yue, and Chun Liu. “Modeling and Simulating Asymmetrical Conductance Changes in Gramicidin Pores.” Computational and Mathematical Biophysics 2, no. 1 (January 1, 2014). https://doi.org/10.2478/mlbmb-2014-0003.
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  - Xu, Shixin, Ping Sheng, and Chun Liu. “An energetic variational approach for ion transport.” Communications in Mathematical Sciences 12, no. 4 (2014): 779–89. https://doi.org/10.4310/cms.2014.v12.n4.a9.
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  - Wan, Li, Shixin Xu, Maijia Liao, Chun Liu, and Ping Sheng. “Self-Consistent Approach to Global Charge Neutrality in Electrokinetics: A Surface Potential Trap Model.” Physical Review X 4, no. 1 (n.d.). https://doi.org/10.1103/physrevx.4.011042.
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- Conference Papers
  - Alber, Mark, Shixin Xu, Zhiliang Xu, Oleg Kim, Samuel Britton, Rustem Litvinov, and John Weisel. “Multi-Scale Models of Deformation of Blood Clots.” In Biophysical Journal, 116:323a-323a. Elsevier BV, 2019. https://doi.org/10.1016/j.bpj.2018.11.1751.
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Teaching & Mentoring
Teaching Activities
- Session 1: Math 101 recitation
  Session 2: Math 101 Mathematical Foundation
  Session 3: Math 101 Mathematical Foundation
  Session 4: Math 305 Advanced Linear Algebra

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Education, Training, & Certifications

Subject Headings

Selected Publications

Academic Articles

Conference Papers

Teaching Activities