Scholars@Duke

• Background
• 

  Education, Training, & Certifications

  • Ph.D., University of Maryland, College Park 1991
• 

  Previous Appointments & Affiliations

  • Associate Professor of Computer Science, Computer Science, Trinity College of Arts & Sciences 2001 - 2009
  • Assistant Professor of Computer Science, Computer Science, Trinity College of Arts & Sciences 1994 - 2001
• Research
• 

  Selected Grants

  • Hybrid virtual-MRI/CBCT: A new paradigm for image guidance in liver SBRT awarded by National Institutes of Health 2019 - 2021
  • A Limited-angle Intra-fractional Verification (LIVE) System for SBRT Treatments awarded by National Institutes of Health 2014 - 2020
  • Collaborative Research: Integral Equation-Based Fast Algorithms and Graph-Theoretic Methods for Large-Scale Simulations awarded by  National Science Foundation 2009 - 2015
  • A Shift in Computing Platform for Advancing Research and Education awarded by Army Research Office 2013 - 2014
  • Distributed multiscale geometric processing on real-time sensor networks on radiation fields awarded by  National Science Foundation 2002 - 2004
  • Data-Intensive Computing for Spatial Models awarded by  National Science Foundation 1999 - 2004
  • TUNE: System Support for Memory-Friendly Programming awarded by  National Science Foundation 1997 - 2001
• Publications & Artistic Works
• 

  Selected Publications

  • Academic Articles

    • Fu, Wanyi, Shobhit Sharma, Ehsan Abadi, Alexandros-Stavros Iliopoulos, Qi Wang, Joseph Y. Lo, Xiaobai Sun, William P. Segars, and Ehsan Samei. “Corrections to "iPhantom: A Framework for Automated Creation of Individualized Computational Phantoms and its Application to CT Organ Dosimetry".” Ieee J Biomed Health Inform 26, no. 1 (January 2022): 478. https://doi.org/10.1109/JBHI.2021.3130397.
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    • Fu, Wanyi, Shobhit Sharma, Ehsan Abadi, Alexandros-Stavros Iliopoulos, Qi Wang, Joseph Y. Lo, Xiaobai Sun, William P. Segars, and Ehsan Samei. “iPhantom: A Framework for Automated Creation of Individualized Computational Phantoms and Its Application to CT Organ Dosimetry.” Ieee J Biomed Health Inform 25, no. 8 (August 2021): 3061–72. https://doi.org/10.1109/JBHI.2021.3063080.
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    • Floros, D., N. Pitsianis, and X. Sun. “Fast Graphlet Transform of Sparse Graphs.” 2020 Ieee High Performance Extreme Computing Conference, Hpec 2020, September 22, 2020. https://doi.org/10.1109/HPEC43674.2020.9286205.
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    • Floros, Dimitris, Tiancheng Liu, Nikos Pitsianis, and Xiaobai Sun. “Using Graphlet Spectrograms for Temporal Pattern Analysis of Virus-Research Collaboration Networks.” Arxiv, September 1, 2020.
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    • Pitsianis, N., A. S. Iliopoulos, D. Floros, and X. Sun. “Spaceland embedding of sparse stochastic graphs.” 2019 Ieee High Performance Extreme Computing Conference, Hpec 2019, September 1, 2019. https://doi.org/10.1109/HPEC.2019.8916505.
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    • Dubey, Abhishek, Alexandros-Stavros Iliopoulos, Xiaobai Sun, Fang-Fang Yin, and Lei Ren. “Iterative inversion of deformation vector fields with feedback control.” Med Phys 45, no. 7 (July 2018): 3147–60. https://doi.org/10.1002/mp.12962.
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    • Zhang, B., J. Huang, N. P. Pitsianis, and X. Sun. “RECFMM: Recursive Parallelization of the Adaptive Fast Multipole Method for Coulomb and Screened Coulomb Interactions.” Communications in Computational Physics 20, no. 2 (August 1, 2016): 534–50. https://doi.org/10.4208/cicp.230216.140416sw.
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    • Zhang, B., B. Peng, J. Huang, N. P. Pitsianis, X. Sun, and B. Lu. “Parallel AFMPB solver with automatic surface meshing for calculation of molecular solvation free energy.” Computer Physics Communications 190 (May 1, 2015): 173–81. https://doi.org/10.1016/j.cpc.2014.12.022.
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    • Hu, J., O. Gallo, K. Pulli, and X. Sun. “HDR Deghosting: How to deal with saturation?” Proceedings of the Ieee Computer Society Conference on Computer Vision and Pattern Recognition, November 15, 2013, 1163–70. https://doi.org/10.1109/CVPR.2013.154.
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    • Iliopoulos, A. S., J. Hu, N. Pitsianis, X. Sun, M. Gehm, and D. Brady. “Big snapshot stitching with scarce overlap.” 2013 Ieee High Performance Extreme Computing Conference, Hpec 2013, January 1, 2013. https://doi.org/10.1109/HPEC.2013.6670349.
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    • Zhang, B., B. Lu, X. Cheng, J. Huang, N. P. Pitsianis, X. Sun, and J. A. McCammon. “Mathematical and numerical aspects of the adaptive fast multipole Poisson-Boltzmann solver.” Communications in Computational Physics 13, no. 1 (January 1, 2013): 107–28. https://doi.org/10.4208/cicp.210711.111111s.
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    • Sismanis, N., N. Pitsianis, and X. Sun. “Parallel search of k-nearest neighbors with synchronous operations.” 2012 Ieee Conference on High Performance Extreme Computing, Hpec 2012, December 1, 2012. https://doi.org/10.1109/HPEC.2012.6408667.
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    • Zhang, Y., J. Liu, E. Kultursay, M. Kandemir, N. Pitsianis, and X. Sun. “Automatic parallel code generation for NuFFT data translation on multicores.” Journal of Circuits, Systems and Computers 21, no. 2 (April 1, 2012). https://doi.org/10.1142/S021812661240004X.
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    • Zhang, B., J. Huang, N. P. Pitsianis, and X. Sun. “A Fourier-series-based kernel-independent fast multipole method.” Journal of Computational Physics 230, no. 15 (January 1, 2011): 5807–21. https://doi.org/10.1016/j.jcp.2011.03.049.
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    • Zhang, B., J. Huang, N. P. Pitsianis, and X. Sun. “Revision of FMM–Yukawa: An adaptive fast multipole method for screened Coulomb interactions.” Computer Physics Communications 181, no. 12 (December 1, 2010): 2206–7. https://doi.org/10.1016/j.cpc.2010.09.012.
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    • Zhang, Y., J. Liu, E. Kultursay, M. Kandemir, N. Pitsianis, and X. Sun. “Scalable parallelization strategies to accelerate NuFFT data translation on multicores.” Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 6272 LNCS, no. PART 2 (November 19, 2010): 125–36. https://doi.org/10.1007/978-3-642-15291-7_13.
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    • Zhang, Y., L. Deng, P. Yedlapalli, S. P. Muralidhara, H. Zhao, M. Kandemir, C. Chakrabarti, N. Pitsianis, and X. Sun. “A special-purpose compiler for look-up table and code generation for function evaluation.” Proceedings  Design, Automation and Test in Europe, Date, June 9, 2010, 1130–35.
    • Zhang, Y., M. Kandemir, N. P. Pitsianis, and X. Sun. “Exploring parallelization strategies for NUFFT data translation.” Embedded Systems Week 2009  Proceedings of the 7th Acm International Conference on Embedded Software, Emsoft ’09, December 24, 2009, 187–96. https://doi.org/10.1145/1629335.1629361.
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    • Kim, J. S., L. Deng, P. Mangalagiri, K. Irick, K. Sobti, M. Kandemir, V. Narayanan, C. Chakrabarti, N. Pitsianis, and X. Sun. “An automated framework for accelerating numerical algorithms on reconfigurable platforms using algorithmic/architectural optimization.” Ieee Transactions on Computers 58, no. 12 (December 1, 2009): 1654–67. https://doi.org/10.1109/TC.2009.78.
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    • Deng, L., C. Chakrabarti, N. Pitsianis, and X. Sun. “Automated optimization of look-up table implementation for function evaluation on FPGAs.” Proceedings of Spie  the International Society for Optical Engineering 7444 (November 11, 2009). https://doi.org/10.1117/12.834184.
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    • Papamakarios, G., G. Rizos, N. P. Pitsianis, and X. Sun. “Fast computation of local correlation coefficients on graphics processing units.” Proceedings of Spie  the International Society for Optical Engineering 7444 (November 11, 2009). https://doi.org/10.1117/12.834180.
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    • Portnoy, A., N. Pitsianis, X. Sun, D. Brady, R. Gibbons, A. Silver, R. Te Kolste, C. Chen, T. Dillon, and D. Prather. “Design and characterization of thin multiple aperture infrared cameras.” Applied Optics 48, no. 11 (April 2009): 2115–26. https://doi.org/10.1364/ao.48.002115.
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    • Wagadarikar, Ashwin A., Nikos P. Pitsianis, Xiaobai Sun, and David J. Brady. “Video rate spectral imaging using a coded aperture snapshot spectral imager.” Optics Express 17, no. 8 (April 2009): 6368–88. https://doi.org/10.1364/oe.17.006368.
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    • Sun, X., N. P. Pitsianis, and P. Bientinesi. “Fast computation of local correlation coefficients.” Proceedings of Spie  the International Society for Optical Engineering 7074 (December 18, 2008). https://doi.org/10.1117/12.796332.
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    • Debroy, N., N. P. Pitsianis, and X. Sun. “Accelerating nonuniform fast Fourier transform via reduction in memory access latency.” Proceedings of Spie  the International Society for Optical Engineering 7074 (December 17, 2008). https://doi.org/10.1117/12.795208.
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    • Sun, X., and N. P. Pitsianis. “Solving non-negative linear inverse problems with the NeAREst method.” Proceedings of Spie  the International Society for Optical Engineering 7074 (December 17, 2008). https://doi.org/10.1117/12.795479.
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    • Wagadarikar, A. A., N. P. Pitsianis, X. Sun, and D. J. Brady. “Spectral image estimation for coded aperture snapshot spectral imagers.” Proceedings of Spie  the International Society for Optical Engineering 7076 (December 17, 2008). https://doi.org/10.1117/12.795545.
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    • Portnoy, Andrew D., Nikos P. Pitsianis, Xiaobai Sun, and David J. Brady. “Multichannel sampling schemes for optical imaging systems.” Applied Optics 47, no. 10 (April 2008): B76–85. https://doi.org/10.1364/ao.47.000b76.
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    • Bao, Y., I. N. Bozkur, T. Dayar, X. Sun, and K. S. Trivedi. “Decompositional analysis of Kronecker structured Markov chains.” Electronic Transactions on Numerical Analysis 31 (January 1, 2008): 271–94.
    • Kim, J. S., P. Mangalagiri, K. Irick, M. Kandemir, V. Narayanan, K. Sobti, L. Deng, C. Chakrabarti, N. Pitsianis, and X. Sun. “TANOR: A tool for accelerating N-body simulations on reconfigurable platform.” Proceedings  2007 International Conference on Field Programmable Logic and Applications, Fpl, December 1, 2007, 68–73. https://doi.org/10.1109/FPL.2007.4380627.
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    • Sobti, K., L. Deng, C. Chakraharti, N. Pitsianis, X. Sun, J. Kim, P. Mangalagiri, K. Irick, M. Kandemir, and V. Narayanan. “Efficient function evaluations with lookup tables for structured matrix operations.” Ieee Workshop on Signal Processing Systems, Sips: Design and Implementation, December 1, 2007, 463–68. https://doi.org/10.1109/SIPS.2007.4387592.
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    • Pitsianis, N. P., D. J. Brady, and X. Sun. “The MONTAGE least gradient image reconstruction.” Optics Infobase Conference Papers, January 1, 2007.
    • Shankar, M., N. Pitsianis, X. Sun, and D. Brady. “Compressive measurements for video.” Optics Infobase Conference Papers, January 1, 2007.
    • Pitsianis, N. P., D. J. Brady, A. Portnoy, X. Sun, T. Suleski, M. A. Fiddy, M. R. Feldman, and R. D. Tekolste. “Compressive imaging sensors.” Proceedings of Spie  the International Society for Optical Engineering 6232 (September 18, 2006). https://doi.org/10.1117/12.666451.
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    • Chen, G., L. Xue, J. Kim, K. Sobti, L. Deng, X. Sun, N. Pitsianis, C. Chakrabarti, M. Kandemir, and N. Vijaykrishnan. “Geometric tiling for reducing power consumption in structured matrix operations.” 2006 Ieee International Systems on Chip Conference, Soc, January 1, 2006, 113–14. https://doi.org/10.1109/SOCC.2006.283861.
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    • Brady, David J., Michael E. Gehm, Nikos Pitsianis, and Xiaobai Sun. “Compressive sampling strategies for integrated microspectrometers.” Proceedings of Spie  the International Society for Optical Engineering 6232 (2006): 62320. https://doi.org/10.1117/12.666124.
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    • Pitsianis, N. P., D. J. Brady, and X. Sun. “Sensor-layer image compression based on the quantized cosine transform.” Proceedings of Spie  the International Society for Optical Engineering 5817 (November 15, 2005): 250–57. https://doi.org/10.1117/12.605659.
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    • Bao, Y., X. Sun, and K. S. Trivedi. “A workload-based analysis of software aging, and rejuvenation.” Ieee Transactions on Reliability 54, no. 3 (September 1, 2005): 541–48. https://doi.org/10.1109/TR.2005.853442.
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    • Pitsianis, N. P., D. J. Brady, and X. Sun. “The quantized cosine transform for sensor-layer image compression.” Optics Infobase Conference Papers, January 1, 2005.
    • Pitsianis, N. P., D. J. Brady, and X. Sun. “The quantized cosine transform for sensor-layer image compression.” Optics Infobase Conference Papers, January 1, 2005.
    • Sun, X., and E. S. Quintana-Ortí. “Spectral division methods for block generalized Schur decompositions.” Mathematics of Computation 73, no. 248 (October 1, 2004): 1827–47. https://doi.org/10.1090/S0025-5718-04-01667-9.
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    • Brady, David J., Nikos P. Pitsianis, and Xiaobai Sun. “Reference structure tomography.” Journal of the Optical Society of America. A, Optics, Image Science, and Vision 21, no. 7 (July 2004): 1140–47. https://doi.org/10.1364/josaa.21.001140.
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    • Bao, Y., X. Sun, and K. S. Trivedi. “Adaptive Software Rejuvenation: Degradation Model and Rejuvenation Scheme.” Proceedings of the International Conference on Dependable Systems and Networks, December 1, 2003, 241–48.
    • Sun, X., and Y. Bao. “A Kronecker product representation of the fast Gauss transform.” Siam Journal on Matrix Analysis and Applications 24, no. 3 (January 1, 2003): 768–86. https://doi.org/10.1137/S0895479800380374.
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    • Sun, X., and E. S. Quintana-Ortí. “The generalized Newton iteration for the matrix sign function.” Siam Journal of Scientific Computing 24, no. 2 (January 1, 2003): 669–83. https://doi.org/10.1137/S1064827598348696.
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    • Pauca, V. P., A. F. Rodriguez, X. Sun, and K. S. Trivedi. “A methodology towards automatic implementation of N-body algorithms.” Applied Numerical Mathematics 40, no. 1–2 (January 1, 2002): 3–21. https://doi.org/10.1016/S0168-9274(01)00061-7.
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    • Jin, W., X. Sun, and J. S. Chase. “FASTSLIM: Prefetch-Safe Trace Reduction for I/O Cache Simulation.” Acm Transactions on Modeling and Computer Simulation 11, no. 2 (April 1, 2001): 125–60. https://doi.org/10.1145/384169.384170.
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    • Sun, X., and N. P. Pitsianis. “A matrix version of the fast multipole method.” Siam Review 43, no. 2 (January 1, 2001): 289–300. https://doi.org/10.1137/S0036144500370835.
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    • Quintana, E. S., G. Quintana, X. Sun, and R. Van de Geijn. “A note on parallel matrix inversion.” Siam Journal of Scientific Computing 22, no. 5 (January 1, 2001): 1762–71. https://doi.org/10.1137/S1064827598345679.
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    • Huss-Lederman, S., E. S. Quintana-ORTÍ, X. Sun, and Y. J. Y. Wu. “Parallel spectral division using the matrix sign function for the generalized eigenproblem.” International Journal of High Speed Computing 11, no. 1 (December 1, 2000): 1–14. https://doi.org/10.1142/S0129053300000084.
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    • Chu, M. T., V. P. Pauca, R. J. Plemmons, and X. Sun. “A mathematical framework for the linear reconstructor problem in adaptive optics.” Linear Algebra and Its Applications 316, no. 1–3 (September 1, 2000): 113–35. https://doi.org/10.1016/S0024-3795(00)00019-7.
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    • Pauca, V. P., B. L. Ellerbroek, R. J. Plemmons, and X. Sun. “Structured matrix representations of two-parameter Hankel transforms in adaptive optics.” Linear Algebra and Its Applications 316, no. 1–3 (September 1, 2000): 29–43. https://doi.org/10.1016/S0024-3795(99)00267-0.
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    • Bischof, C. H., B. Lang, and S. Xiaobai. “Algorithm 807: The SBR toolbox - Software for successive band reduction.” Acm Transactions on Mathematical Software 26, no. 4 (January 1, 2000): 602–16. https://doi.org/10.1145/365723.365736.
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    • Bischof, C. H., B. Lang, and X. Sun. “A framework for symmetric band reduction.” Acm Transactions on Mathematical Software 26, no. 4 (January 1, 2000): 581–601. https://doi.org/10.1145/365723.365735.
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    • Ramakrishna, V., R. Ober, X. Sun, O. Steuernagel, J. Botina, and H. Rabitz. “Explicit generation of unitary transformations in a single atom or molecule.” Physical Review a  Atomic, Molecular, and Optical Physics 61, no. 3 (January 1, 2000): 6. https://doi.org/10.1103/PhysRevA.61.032106.
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    • Ramakrishna, V., R. Ober, X. Sun, O. Steuernagel, J. Botina, and H. Rabitz. “Explicit generation of unitary transformations in a single atom or molecule.” Physical Review a  Atomic, Molecular, and Optical Physics 61, no. 3 (January 1, 2000): 321061–66.
    • Pauca, V. P., B. L. Ellerbroek, N. P. Pitsianis, R. J. Plemmons, and X. Sun. “Performance modeling of adaptive-optics imaging systems using fast Hankel transforms.” Proceedings of Spie  the International Society for Optical Engineering 3461 (December 1, 1998): 339–47. https://doi.org/10.1117/12.325694.
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    • Quintana-Ortí, G., X. Sun, and C. H. Bischof. “A BLAS-3 version of the QR factorization with column pivoting.” Siam Journal on Scientific Computing 19, no. 5 (January 1, 1998): 1486–94. https://doi.org/10.1137/S1064827595296732.
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    • Bischof, C. H., and X. Sun. “On tridiagonalizing and diagonalizing symmetric matrices with repeated eigenvalues.” Siam Journal on Matrix Analysis and Applications 17, no. 4 (January 1, 1996): 869–85. https://doi.org/10.1137/S0895479892227608.
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    • Bischof, C., S. Huss-Lederman, X. Sun, A. Tsao, and T. Turnbull. “Parallel performance of a symmetric eigensolver based on the invariant subspace decomposition approach.” Proceedings of the Scalable High Performance Computing Conference, December 1, 1994, 32–39.
    • Bischof, C., X. Sun, and B. Lang. “Parallel tridiagonalization through two-step band reduction.” Proceedings of the Scalable High Performance Computing Conference, December 1, 1994, 23–27.

  • Conference Papers

    • Floros, D., T. Liu, N. Pitsianis, and X. Sun. “Fast Graph Algorithms for Superpixel Segmentation.” In 2022 Ieee High Performance Extreme Computing Conference, Hpec 2022, 2022. https://doi.org/10.1109/HPEC55821.2022.9926359.
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    • Liu, T., D. Floros, N. Pitsianis, and X. Sun. “Digraph Clustering by the BlueRed Method.” In 2021 Ieee High Performance Extreme Computing Conference, Hpec 2021, 2021. https://doi.org/10.1109/HPEC49654.2021.9622834.
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    • Campton, C., and X. Sun. “Auxiliary maximum likelihood estimation for noisy point cloud registration.” In 2019 Ieee High Performance Extreme Computing Conference, Hpec 2019, 2019. https://doi.org/10.1109/HPEC.2019.8916224.
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    • Floros, D., T. Liu, N. Pitsianis, and X. Sun. “Sparse Dual of the Density Peaks Algorithm for Cluster Analysis of High-dimensional Data.” In 2018 Ieee High Performance Extreme Computing Conference, Hpec 2018, 2018. https://doi.org/10.1109/HPEC.2018.8547519.
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    • Liu, T., Y. Qian, X. Chen, and X. Sun. “Damping Effect on PageRank Distribution.” In 2018 Ieee High Performance Extreme Computing Conference, Hpec 2018, 2018. https://doi.org/10.1109/HPEC.2018.8547555.
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    • Xian, Y., X. Sun, W. Liao, Y. Zhang, D. Nowacek, and L. Nolte. “Intrinsic structure study of whale vocalizations.” In Oceans 2016 Mts/Ieee Monterey, Oce 2016, 2016. https://doi.org/10.1109/OCEANS.2016.7761101.
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    • Nathan, R., B. Anthonio, S. L. Lu, H. Naeimi, D. J. Sorin, and X. Sun. “Recycled Error Bits: Energy-Efficient Architectural Support for Floating Point Accuracy.” In International Conference for High Performance Computing, Networking, Storage and Analysis, Sc, 2015-January:117–27, 2014. https://doi.org/10.1109/SC.2014.15.
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    • Pitsianis, N. P., D. J. Brady, and X. Sun. “The MONTAGE least gradient image reconstruction.” In Optics Infobase Conference Papers, 2007. https://doi.org/10.1364/cosi.2007.ctub3.
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    • Shankar, M., N. Pitsianis, X. Sun, and D. Brady. “Compressive measurements for video.” In Optics Infobase Conference Papers, 2007. https://doi.org/10.1364/fio.2007.fmj4.
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    • Pitsianis, N. P., D. J. Brady, and X. Sun. “The quantized cosine transform for sensor-layer image compression.” In Optics Infobase Conference Papers, 2005. https://doi.org/10.1364/cosi.2005.jma4.
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    • Bischof, C., S. Huss-Lederman, X. Sun, and A. Tsao. “The PRISM project: Infrastructure and algorithms for parallel eigensolvers.” In Proceedings of Scalable Parallel Libraries Conference, Splc 1993, 123–31, 1993. https://doi.org/10.1109/SPLC.1993.365575.
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• Teaching & Mentoring
• 

  Recent Courses

  • COMPSCI 321: Graph Analysis with Matrix Computation 2023
  • COMPSCI 520: Numerical Analysis 2023
  • COMPSCI 521: Graph Analysis with Matrix Computation 2023
  • MATH 462: Graph Analysis with Matrix Computation 2023
  • MATH 565: Numerical Analysis 2023
  • STA 612: Numerical Analysis 2023
  • COMPSCI 321: Graph Analysis with Matrix Computation 2022
  • COMPSCI 520: Numerical Analysis 2022
  • COMPSCI 521: Graph Analysis with Matrix Computation 2022
  • MATH 565: Numerical Analysis 2022
  • STA 612: Numerical Analysis 2022
  • COMPSCI 520: Numerical Analysis 2021
  • COMPSCI 590: Advanced Topics in Computer Science 2021
  • MATH 565: Numerical Analysis 2021
  • STA 612: Numerical Analysis 2021
• Scholarly, Clinical, & Service Activities
• 

  Outreach & Engaged Scholarship

  • Bass Connections Faculty Team Member. Feature Extraction and Quantitative Analysis of Large Scientific Document Corpora. August 2015 - May 2016  2015 - 2016
  • Bass Connections Faculty Team Member . Modeling and Simulation . August 2014 - July 2015  2014 - 2015
  • Bass Connections Faculty Team Member. Modeling Tools for Energy Systems Analysis (MOTESA). July 2014 - May 2015  2014 - 2015
  • Bass Connections Faculty Team Member. Modeling Tools for Energy Systems Analysis (MOTESA). August 2013 - May 2014  2013 - 2014

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