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Elder-rule-staircodes for augmented metric spaces

Publication ,  Journal Article
Cai, C; Kim, W; Memoli, F; Wang, Y
Published in: Siam Journal on Applied Algebra and Geometry
January 1, 2021

An augmented metric space is a metric space (X, dX) equipped with a function fX : X \rightarrow \BbbR . This type of data arises commonly in practice, e.g., a point cloud X in \BbbR D where each point x \in X has a density function value fX(x) associated to it. An augmented metric space (X, dX, fX) naturally gives rise to a 2-parameter filtration \scrK . However, the resulting 2-parameter persistent homology H\bullet (\scrK ) could still be of wild representation type and may not have simple indecomposables. In this paper, motivated by the elder-rule for the zeroth homology of 1-parameter filtration, we propose a barcode-like summary, called the elder-rule-staircode, as a way to encode H0(\scrK ). Specifically, if n = | X| , the elder-rule-staircode consists of n number of staircase-like blocks in the plane. We show that if H0(\scrK ) is interval decomposable, then the barcode of H0(\scrK ) is equal to the elder-rule-staircode. Furthermore, regardless of the interval decomposability, the fibered barcode, the dimension function (a.k.a. the Hilbert function), and the graded Betti numbers of H0(\scrK ) can all be efficiently computed once the elder-rule-staircode is given. Finally, we develop and implement an efficient algorithm to compute the elder-rule-staircode in O(n2 log n) time, which can be improved to O(n2\alpha (n)) if X is from a fixed dimensional Euclidean space \BbbR D, where \alpha (n) is the inverse Ackermann function.

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Published In

Siam Journal on Applied Algebra and Geometry

DOI

EISSN

2470-6566

Publication Date

January 1, 2021

Volume

5

Issue

3

Start / End Page

417 / 454
 

Citation

APA
Chicago
ICMJE
MLA
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Cai, C., Kim, W., Memoli, F., & Wang, Y. (2021). Elder-rule-staircodes for augmented metric spaces. Siam Journal on Applied Algebra and Geometry, 5(3), 417–454. https://doi.org/10.1137/20M1353605
Cai, C., W. Kim, F. Memoli, and Y. Wang. “Elder-rule-staircodes for augmented metric spaces.” Siam Journal on Applied Algebra and Geometry 5, no. 3 (January 1, 2021): 417–54. https://doi.org/10.1137/20M1353605.
Cai C, Kim W, Memoli F, Wang Y. Elder-rule-staircodes for augmented metric spaces. Siam Journal on Applied Algebra and Geometry. 2021 Jan 1;5(3):417–54.
Cai, C., et al. “Elder-rule-staircodes for augmented metric spaces.” Siam Journal on Applied Algebra and Geometry, vol. 5, no. 3, Jan. 2021, pp. 417–54. Scopus, doi:10.1137/20M1353605.
Cai C, Kim W, Memoli F, Wang Y. Elder-rule-staircodes for augmented metric spaces. Siam Journal on Applied Algebra and Geometry. 2021 Jan 1;5(3):417–454.

Published In

Siam Journal on Applied Algebra and Geometry

DOI

EISSN

2470-6566

Publication Date

January 1, 2021

Volume

5

Issue

3

Start / End Page

417 / 454