Plant Comparative Genomics. Methods in Molecular Biology
978-1-0716-2429-6_10
Publication
, Chapter
Garfias Gallegos, D; Zirión-Martínez, C; Bustos-Díaz, ED; Arellano-Fernández, TV; Lovaco-Flores, JA; Espinosa-Jaime, A; Avelar-Rivas, JA ...
July 12, 2022
Microbial communities’ taxonomic and functional diversity has been broadly studied since sequencing technologies enabled faster and cheaper data obtainment. Nevertheless, the programming skills needed and the amount of software available may be overwhelming to someone trying to analyze these data. Here, we present a comprehensive and straightforward pipeline that takes shotgun metagenomics data through the needed steps to obtain valuable results. The raw data goes through a quality control process, metagenomic assembly, binning (the obtention of single genomes from a metagenome), taxonomic assignment, and taxonomic diversity analysis and visualization.
Duke Scholars
Publication Date
July 12, 2022
Volume
2512
Start / End Page
153 / 179
Publisher
Humana
Citation
APA
Chicago
ICMJE
MLA
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Garfias Gallegos, D., Zirión-Martínez, C., Bustos-Díaz, E. D., Arellano-Fernández, T. V., Lovaco-Flores, J. A., Espinosa-Jaime, A., … Sélem-Mójica, N. (2022). 978-1-0716-2429-6_10. In A. Pereira-Santana, S. D. Gamboa-Tuz, & L. C. Rodríguez-Zapata (Eds.), Plant Comparative Genomics. Methods in Molecular Biology (Vol. 2512, pp. 153–179). New York, NY: Humana.
Garfias Gallegos, Diego, Claudia Zirión-Martínez, Edder D. Bustos-Díaz, Tania Vanessa Arellano-Fernández, José Abel Lovaco-Flores, Aarón Espinosa-Jaime, J Abraham Avelar-Rivas, and Nelly Sélem-Mójica. “978-1-0716-2429-6_10.” In Plant Comparative Genomics. Methods in Molecular Biology, edited by Alejandro Pereira-Santana, Samuel David Gamboa-Tuz, and Luis Carlos Rodríguez-Zapata, 2512:153–79. New York, NY: Humana, 2022.
Garfias Gallegos D, Zirión-Martínez C, Bustos-Díaz ED, Arellano-Fernández TV, Lovaco-Flores JA, Espinosa-Jaime A, et al. 978-1-0716-2429-6_10. In: Pereira-Santana A, Gamboa-Tuz SD, Rodríguez-Zapata LC, editors. Plant Comparative Genomics Methods in Molecular Biology. New York, NY: Humana; 2022. p. 153–79.
Garfias Gallegos, Diego, et al. “978-1-0716-2429-6_10.” Plant Comparative Genomics. Methods in Molecular Biology, edited by Alejandro Pereira-Santana et al., vol. 2512, Humana, 2022, pp. 153–79.
Garfias Gallegos D, Zirión-Martínez C, Bustos-Díaz ED, Arellano-Fernández TV, Lovaco-Flores JA, Espinosa-Jaime A, Avelar-Rivas JA, Sélem-Mójica N. 978-1-0716-2429-6_10. In: Pereira-Santana A, Gamboa-Tuz SD, Rodríguez-Zapata LC, editors. Plant Comparative Genomics Methods in Molecular Biology. New York, NY: Humana; 2022. p. 153–179.
Publication Date
July 12, 2022
Volume
2512
Start / End Page
153 / 179
Publisher
Humana