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Single-polyp metabolomics reveals biochemical structuring of the coral holobiont at multiple scales.

Publication ,  Journal Article
Roach, TNF; Matsuda, SB; Martin, C; Huckeba, G; Huckeba, J; Kahkejian, V; Santoro, EP; van der Geer, A; Drury, C; Quinn, RA
Published in: Communications biology
September 2023

All biology happens in space, and spatial structuring plays an important role in mediating biological processes at all scales from cells to ecosystems. However, the metabolomic structuring of the coral holobiont has yet to be fully explored. Here, we present a method to detect high-quality metabolomic data from individual coral polyps and apply this method to study the patterning of biochemicals across multiple spatial (~1 mm - ~100 m) and organizational scales (polyp to population). The data show a strong signature for individual coral colonies, a weaker signature of branches within colonies, and variation at the polyp level related to the polyps' location along a branch. Mapping metabolites to either the coral or algal components of the holobiont reveals that polyp-level variation along the length of a branch was largely driven by molecules associated with the cnidarian host as opposed to the algal symbiont, predominantly putative sulfur-containing metabolites. This work yields insights on the spatial structuring of biochemicals in the coral holobiont, which is critical for design, analysis, and interpretation of studies on coral reef biochemistry.

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Published In

Communications biology

DOI

EISSN

2399-3642

ISSN

2399-3642

Publication Date

September 2023

Volume

6

Issue

1

Start / End Page

984

Related Subject Headings

  • Metabolomics
  • Ecosystem
  • Data Accuracy
  • Coral Reefs
  • Anthozoa
  • Animals
  • 32 Biomedical and clinical sciences
  • 31 Biological sciences
 

Citation

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Roach, T. N. F., Matsuda, S. B., Martin, C., Huckeba, G., Huckeba, J., Kahkejian, V., … Quinn, R. A. (2023). Single-polyp metabolomics reveals biochemical structuring of the coral holobiont at multiple scales. Communications Biology, 6(1), 984. https://doi.org/10.1038/s42003-023-05342-8
Roach, Ty N. F., Shayle B. Matsuda, Christian Martin, Gintare Huckeba, Joel Huckeba, Valerie Kahkejian, Erika P. Santoro, Anneke van der Geer, Crawford Drury, and Robert A. Quinn. “Single-polyp metabolomics reveals biochemical structuring of the coral holobiont at multiple scales.Communications Biology 6, no. 1 (September 2023): 984. https://doi.org/10.1038/s42003-023-05342-8.
Roach TNF, Matsuda SB, Martin C, Huckeba G, Huckeba J, Kahkejian V, et al. Single-polyp metabolomics reveals biochemical structuring of the coral holobiont at multiple scales. Communications biology. 2023 Sep;6(1):984.
Roach, Ty N. F., et al. “Single-polyp metabolomics reveals biochemical structuring of the coral holobiont at multiple scales.Communications Biology, vol. 6, no. 1, Sept. 2023, p. 984. Epmc, doi:10.1038/s42003-023-05342-8.
Roach TNF, Matsuda SB, Martin C, Huckeba G, Huckeba J, Kahkejian V, Santoro EP, van der Geer A, Drury C, Quinn RA. Single-polyp metabolomics reveals biochemical structuring of the coral holobiont at multiple scales. Communications biology. 2023 Sep;6(1):984.

Published In

Communications biology

DOI

EISSN

2399-3642

ISSN

2399-3642

Publication Date

September 2023

Volume

6

Issue

1

Start / End Page

984

Related Subject Headings

  • Metabolomics
  • Ecosystem
  • Data Accuracy
  • Coral Reefs
  • Anthozoa
  • Animals
  • 32 Biomedical and clinical sciences
  • 31 Biological sciences