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First reported case of Capnocytophaga cynodegmi infective endocarditis: A diagnostic odyssey.

Journal articles  - Journal Article
Tran, LNB; Zhuo, R; Singha, M; Sekhon, H; Yang, S; Fishbein, GA; Tymchuk, C; Allyn, PR
Published in: Int J Infect Dis
March 2026

Capnocytophaga cynodegmi, a commensal of canine and feline oral flora, is rarely implicated in human infections, with most cases limited to localized soft tissue infections. We present the first case of C. cynodegmi-associated infective endocarditis (IE) in a 39-year-old man with bicuspid aortic valve and alcohol use disorder. The patient presented with sepsis, aortic valve vegetations, and systemic complications, including heart failure and shock liver. Despite negative blood and valve cultures, metagenomic sequencing of plasma (Karius test) initially detected Capnocytophaga canimorsus, while targeted Next-Generation Sequencing (NGS) of explanted valve tissue confirmed C. cynodegmi (100% match). The patient underwent valve replacement and completed a 6-week course of ampicillin-sulbactam with clinical recovery. This case underscores the diagnostic challenges of fastidious pathogens and demonstrates the potential of C. cynodegmi to cause life-threatening IE. It highlights the necessity of advanced molecular diagnostics, such as NGS, in atypical cases of IE. Clinicians should consider zoonotic Capnocytophaga spp. in culture-negative IE, particularly in high-risk patients with animal exposure or valvular abnormalities.

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Published In

Int J Infect Dis

DOI

EISSN

1878-3511

Publication Date

March 2026

Volume

164

Start / End Page

108446

Location

Canada

Related Subject Headings

  • Microbiology
  • Male
  • Humans
  • High-Throughput Nucleotide Sequencing
  • Gram-Negative Bacterial Infections
  • Endocarditis, Bacterial
  • Endocarditis
  • Capnocytophaga
  • Bicuspid Aortic Valve Disease
  • Aortic Valve
 

Citation

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Tran, L. N. B., Zhuo, R., Singha, M., Sekhon, H., Yang, S., Fishbein, G. A., … Allyn, P. R. (2026). First reported case of Capnocytophaga cynodegmi infective endocarditis: A diagnostic odyssey. Int J Infect Dis, 164, 108446. https://doi.org/10.1016/j.ijid.2026.108446
Tran, Lucy Ngoc B., Ran Zhuo, Meher Singha, Harveen Sekhon, Shangxin Yang, Gregory A. Fishbein, Christopher Tymchuk, and Paul R. Allyn. “First reported case of Capnocytophaga cynodegmi infective endocarditis: A diagnostic odyssey.Int J Infect Dis 164 (March 2026): 108446. https://doi.org/10.1016/j.ijid.2026.108446.
Tran LNB, Zhuo R, Singha M, Sekhon H, Yang S, Fishbein GA, et al. First reported case of Capnocytophaga cynodegmi infective endocarditis: A diagnostic odyssey. Int J Infect Dis. 2026 Mar;164:108446.
Tran, Lucy Ngoc B., et al. “First reported case of Capnocytophaga cynodegmi infective endocarditis: A diagnostic odyssey.Int J Infect Dis, vol. 164, Mar. 2026, p. 108446. Pubmed, doi:10.1016/j.ijid.2026.108446.
Tran LNB, Zhuo R, Singha M, Sekhon H, Yang S, Fishbein GA, Tymchuk C, Allyn PR. First reported case of Capnocytophaga cynodegmi infective endocarditis: A diagnostic odyssey. Int J Infect Dis. 2026 Mar;164:108446.

Published In

Int J Infect Dis

DOI

EISSN

1878-3511

Publication Date

March 2026

Volume

164

Start / End Page

108446

Location

Canada

Related Subject Headings

  • Microbiology
  • Male
  • Humans
  • High-Throughput Nucleotide Sequencing
  • Gram-Negative Bacterial Infections
  • Endocarditis, Bacterial
  • Endocarditis
  • Capnocytophaga
  • Bicuspid Aortic Valve Disease
  • Aortic Valve