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Advanced tissue clearing and three-dimensional imaging approaches to visualize neural innervation in the rat knee joints

Journal articles  - Journal Article
Socorro, M; Gaire, J; Rolim de Lavor, J; Cruz-Almeida, Y; Caudle, RM; Smith, R; Watkins, SC; Allen, KD; Younis, J; Yan, J; Wythe, JD; Wang, L ...
Published in: Npj Imaging
December 1, 2026

Tissue clearing techniques, combined with immunolabeling and three-dimensional (3-D) high-resolution imaging, have emerged as powerful tools for mapping the architecture of nerves that supply a specific tissue. However, despite significant advances in these techniques, visualizing nerve fibers within joint structures remains a technically challenging task. Moreover, most current protocols are optimized for use in mice, limiting their application in other animal species with greater tissue size, such as rats, which offer advantages for anatomical studies combined with behavioral models of sensory innervation and pain. Therefore, continued refinement of tissue clearing and imaging methods in rat tissue is essential for improving the resolution and translational relevance of joint innervation studies. In this work, we assessed and compared two tissue clearing protocols, a modified polyethylene glycol-associated solvent system (PEGASOS) and a newly developed hybrid method that combines CUBIC/3DISCO for tissue clearing (c-Clear), to visualize neurofilament-positive (NF+) nerve fibers in rat knees using 3-D fluorescence imaging. In summary, c-Clear resulted in a better option to detect NF+ fibers in the rat knee, whereas PEGASOS cleared tissues revealed greater autofluorescence within the muscle and bone marrow, compromising neurofilament visualization. Additionally, we highlight the importance of multi-angle imaging approaches when using cutting-edge light-sheet microscopy to capture the spatial context of neural innervation patterns within the complex knee microenvironment. (Figure presented.)

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Published In

Npj Imaging

DOI

EISSN

2948-197X

Publication Date

December 1, 2026

Volume

4

Issue

1
 

Citation

APA
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ICMJE
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Socorro, M., Gaire, J., Rolim de Lavor, J., Cruz-Almeida, Y., Caudle, R. M., Smith, R., … Almarza, A. J. (2026). Advanced tissue clearing and three-dimensional imaging approaches to visualize neural innervation in the rat knee joints (Accepted). Npj Imaging, 4(1). https://doi.org/10.1038/s44303-026-00167-6
Socorro, M., J. Gaire, J. Rolim de Lavor, Y. Cruz-Almeida, R. M. Caudle, R. Smith, S. C. Watkins, et al. “Advanced tissue clearing and three-dimensional imaging approaches to visualize neural innervation in the rat knee joints (Accepted).” Npj Imaging 4, no. 1 (December 1, 2026). https://doi.org/10.1038/s44303-026-00167-6.
Socorro M, Gaire J, Rolim de Lavor J, Cruz-Almeida Y, Caudle RM, Smith R, et al. Advanced tissue clearing and three-dimensional imaging approaches to visualize neural innervation in the rat knee joints (Accepted). Npj Imaging. 2026 Dec 1;4(1).
Socorro, M., et al. “Advanced tissue clearing and three-dimensional imaging approaches to visualize neural innervation in the rat knee joints (Accepted).” Npj Imaging, vol. 4, no. 1, Dec. 2026. Scopus, doi:10.1038/s44303-026-00167-6.
Socorro M, Gaire J, Rolim de Lavor J, Cruz-Almeida Y, Caudle RM, Smith R, Watkins SC, Allen KD, Younis J, Yan J, Wythe JD, Worley KC, Wang L, Wagenaar JB, Vivanco-Estela A, Tovias L, Tappan S, Tantry EK, Swahn H, Strinden M, Stover J, Southern KM, Smith SB, Ruiz OE, Ronan EA, de Lavor JR, Roberts A, Dasilva MCR, Ren D, Ray RS, Prieto H, Price TJ, Perry S, Pela M, Patterson F, Otto KJ, Otero M, Orange DE, Olmer M, Obeidat AM, Newton MD, Miller RE, Miller RJ, Mehta B, Martone ME, Malfait AM, Majano CF, Maerz T, Macpherson LJ, Lotz MK, Li J, Leynes C, Levites Y, Lee B, Lai Z, Kulkarni P, Ko FC, Jin Z, Jayachandran S, Ishola AO, Ishihara S, Iadarola MJ, Haelterman NA, Greene S, Goolsby B, Gandhi A, Fullam S, Freburg-Hoffmeister D, Ernberg M, Emrick JJ, Dou Z, Donnelly C, Dolwick MF, Cortez I, Constantinescu B, Chen R, Chen Y, Cela R, Carpio DL, Cai D, Boline J, Boccanfuso J, Boada MD, Bandrowski A, de Paula BB, Bae Y, Arenkiel B, Akopian AN, Watson AM, Almarza AJ. Advanced tissue clearing and three-dimensional imaging approaches to visualize neural innervation in the rat knee joints (Accepted). Npj Imaging. 2026 Dec 1;4(1).

Published In

Npj Imaging

DOI

EISSN

2948-197X

Publication Date

December 1, 2026

Volume

4

Issue

1