Briggs, Farren B. S., Farhad Mahmoudi, Mahboobeh Fereida-Esfahani, Jessica Sagen, Flavia Nelson, Jorge Oksenberg, Simon Gregory, and W Oliver Tobin. “Serum metabolomic signatures of relapse recovery in early multiple sclerosis.” Mult Scler Relat Disord 108 (April 2026): 107082. https://doi.org/10.1016/j.msard.2026.107082.

Ludwig, Andrea L., Zachary P. McKay, Griffin P. Carter, Mark A. Katz, Georgia Howell, Vaibhav Jain, Stephanie Arvai, et al. “Supplementary Figure S2 from Lymphotropic Virotherapy Induces DC and High Endothelial Venule Inflammation, Promoting the Antitumor Efficacy of Intratumor Virus Administration,” February 3, 2026. https://doi.org/10.1158/2326-6066.31239131.

Ludwig, Andrea L., Zachary P. McKay, Griffin P. Carter, Mark A. Katz, Georgia Howell, Vaibhav Jain, Stephanie Arvai, et al. “Supplementary Table 1 from Lymphotropic Virotherapy Induces DC and High Endothelial Venule Inflammation, Promoting the Antitumor Efficacy of Intratumor Virus Administration,” February 3, 2026. https://doi.org/10.1158/2326-6066.31239113.

Ludwig, Andrea L., Zachary P. McKay, Griffin P. Carter, Mark A. Katz, Georgia Howell, Vaibhav Jain, Stephanie Arvai, et al. “Supplementary Figure S1 from Lymphotropic Virotherapy Induces DC and High Endothelial Venule Inflammation, Promoting the Antitumor Efficacy of Intratumor Virus Administration,” February 3, 2026. https://doi.org/10.1158/2326-6066.31239134.

Ludwig, Andrea L., Zachary P. McKay, Griffin P. Carter, Mark A. Katz, Georgia Howell, Vaibhav Jain, Stephanie Arvai, et al. “Supplementary Table S3 from Lymphotropic Virotherapy Induces DC and High Endothelial Venule Inflammation, Promoting the Antitumor Efficacy of Intratumor Virus Administration,” February 3, 2026. https://doi.org/10.1158/2326-6066.31239107.

Ludwig, Andrea L., Zachary P. McKay, Griffin P. Carter, Mark A. Katz, Georgia Howell, Vaibhav Jain, Stephanie Arvai, et al. “Lymphotropic Virotherapy Induces DC and High Endothelial Venule Inflammation, Promoting the Antitumor Efficacy of Intratumor Virus Administration.” Cancer Immunol Res 14, no. 2 (February 3, 2026): 228–42. https://doi.org/10.1158/2326-6066.CIR-25-0756.

Ludwig, Andrea L., Zachary P. McKay, Griffin P. Carter, Mark A. Katz, Georgia Howell, Vaibhav Jain, Stephanie Arvai, et al. “Supplementary Figure S4 from Lymphotropic Virotherapy Induces DC and High Endothelial Venule Inflammation, Promoting the Antitumor Efficacy of Intratumor Virus Administration,” February 3, 2026. https://doi.org/10.1158/2326-6066.31239125.

Ludwig, Andrea L., Zachary P. McKay, Griffin P. Carter, Mark A. Katz, Georgia Howell, Vaibhav Jain, Stephanie Arvai, et al. “Supplementary Figure S5 from Lymphotropic Virotherapy Induces DC and High Endothelial Venule Inflammation, Promoting the Antitumor Efficacy of Intratumor Virus Administration,” February 3, 2026. https://doi.org/10.1158/2326-6066.31239119.

Ludwig, Andrea L., Zachary P. McKay, Griffin P. Carter, Mark A. Katz, Georgia Howell, Vaibhav Jain, Stephanie Arvai, et al. “Supplementary Figure S3 from Lymphotropic Virotherapy Induces DC and High Endothelial Venule Inflammation, Promoting the Antitumor Efficacy of Intratumor Virus Administration,” February 3, 2026. https://doi.org/10.1158/2326-6066.31239128.

Ludwig, Andrea L., Zachary P. McKay, Griffin P. Carter, Mark A. Katz, Georgia Howell, Vaibhav Jain, Stephanie Arvai, et al. “Supplementary Figure S6 from Lymphotropic Virotherapy Induces DC and High Endothelial Venule Inflammation, Promoting the Antitumor Efficacy of Intratumor Virus Administration,” February 3, 2026. https://doi.org/10.1158/2326-6066.31239116.

Ludwig, Andrea L., Zachary P. McKay, Griffin P. Carter, Mark A. Katz, Georgia Howell, Vaibhav Jain, Stephanie Arvai, et al. “Supplementary Table S2 from Lymphotropic Virotherapy Induces DC and High Endothelial Venule Inflammation, Promoting the Antitumor Efficacy of Intratumor Virus Administration,” February 3, 2026. https://doi.org/10.1158/2326-6066.31239110.

Ludwig, Andrea L., Zachary P. McKay, Griffin P. Carter, Mark A. Katz, Georgia Howell, Vaibhav Jain, Stephanie Arvai, et al. “Data from Lymphotropic Virotherapy Induces DC and High Endothelial Venule Inflammation, Promoting the Antitumor Efficacy of Intratumor Virus Administration,” February 3, 2026. https://doi.org/10.1158/2326-6066.c.8287319.

Ravillah, Durgadevi, Salendra Singh, Ramachandra M. Katabathula, Adam M. Kresak, Bhavatharini Udhayakumar, Rajesh Gupta, Wendy Brock, et al. “VSIG10L is a major determinant of esophageal homeostasis and inherited predisposition to Barrett's esophagus.” Nat Commun 17, no. 1 (January 29, 2026). https://doi.org/10.1038/s41467-026-68975-3.

Haukenfrers, Ellora, Vaibhav Jain, Stephanie Arvai, Khooshbu Patel, Simon G. Gregory, Karen Abramson, and Devi Swain-Lenz. “A platform-agnostic evaluation of non-formalin fixed single cell RNA technologies.” OpenRxiv, January 28, 2026. https://doi.org/10.64898/2026.01.27.702057.

Boulton, Kelsie A., Rinku Thapa, Yun Ju Song, Andrew J. O. Whitehouse, Marilena M. DeMayo, Simon G. Gregory, Izabella Pokorski, et al. “Evaluating placebo responses to intranasal oxytocin in autism: findings from the placebo lead-in phase of a randomised controlled trial.” J Child Psychol Psychiatry, January 19, 2026. https://doi.org/10.1111/jcpp.70116.

Kaushik, Neha, Soumya Rastogi, Shivani Kapadia, Vaibhav Jain, Sonia Verma, Deepak Pandey, Mona Sharma, et al. “Temporal transcriptomic profiling reveals distinct age-associated gene expression signatures in gonads under reduced insulin/IGF-1 signaling in Caenorhabditis elegans.” Cell Commun Signal 23, no. 1 (December 15, 2025): 529. https://doi.org/10.1186/s12964-025-02510-7.

Bayaraa, Odmaa, Michael Aksu, Evon DeBose-Scarlett, Emily Hocke, Vaibhav Jain, Shih-Hsiu J. Wang, Dianne A. Cruz, and Simon G. Gregory. “Multi-region spatial transcriptomics reveals region specific differences in response to amyloid beta (Aβ) plaque induced changes in Alzheimer's disease (AD).” Hum Genomics 20, no. 1 (November 29, 2025): 2. https://doi.org/10.1186/s40246-025-00875-x.

Singh, Kirit, Matthew W. Foster, Marlene J. Violette, Anna M. Corcoran, Kelly M. Hotchkiss, Chelsea O. Railton, Emily E. Blandford, et al. “A surgical window of opportunity trial evaluating the effect of the PCSK9 inhibitor evolocumab on tumoral MHC-I expression and CD8+ infiltration in glioma.” Sci Rep 15, no. 1 (October 23, 2025): 37112. https://doi.org/10.1038/s41598-025-21064-9.

Pyle, Charlie J., Liuyang Wang, Rebecca W. Beerman, Vaibhav Jain, Henry K. E. Ohman, Brandon A. Thompson, Karen R. Abramson, et al. “Paired single-cell and spatial transcriptional profiling reveals a central osteopontin macrophage response mediating tuberculous granuloma formation.” MBio 16, no. 9 (September 10, 2025): e0155925. https://doi.org/10.1128/mbio.01559-25.

Petty, Amy J., Adela Rambi Cardones, Yingai Jane Jin, Vaibhav Jain, Emily Hocke, Harsh B. Pathak, Amrita Mitra, Simon G. Gregory, M Angelica Selim, and Jennifer Y. Zhang. “Insights into Keratinocyte and Immunologic Landscape in Cutaneous Graft-Versus-Host Disease through Single-Cell Transcriptomics.” JID Innov 5, no. 4 (July 2025): 100373. https://doi.org/10.1016/j.xjidi.2025.100373.

SoRelle, Elliott D., Ellora Haukenfrers, Gillian Q. Horn, Vaibhav Jain, James Giarraputo, Karen Abramson, Emily Hocke, et al. “Early multiple sclerosis activity associated with TBX21+CD21loCXCR3+ B cell expansion resembling EBV-induced phenotypes.” JCI Insight 10, no. 12 (June 23, 2025). https://doi.org/10.1172/jci.insight.188543.

Mangoli, Avani, Vennesa Valentine, Spencer M. Maingi, Sophie R. Wu, Harrison Q. Liu, Michael Aksu, Vaibhav Jain, et al. “Disruption of ataxia telangiectasia-mutated kinase enhances radiation therapy efficacy in spatially directed diffuse midline glioma models.” J Clin Invest 135, no. 12 (June 16, 2025). https://doi.org/10.1172/JCI179395.

Cardones, Adela R., Akintunde Emiola, Russell P. Hall, Anthony D. Sung, Jennifer Zhang, Amy J. Petty, Charles Puza, et al. “Cutaneous dysbiosis characterizes the post-allogeneic hematopoietic stem cell transplantation period.” Blood Adv 9, no. 9 (May 13, 2025): 2173–82. https://doi.org/10.1182/bloodadvances.2021004792.

Du, Kuo, David S. Umbaugh, Liuyang Wang, Ji Hye Jun, Rajesh K. Dutta, Seh Hoon Oh, Niansheng Ren, et al. “Author Correction: Targeting senescent hepatocytes for treatment of metabolic dysfunction-associated steatotic liver disease and multi-organ dysfunction.” Nat Commun 16, no. 1 (May 6, 2025): 4195. https://doi.org/10.1038/s41467-025-59084-8.

Verdes, Alyssa, Suvekcha Bhattachan, Alexander Kolevzon, Bryan H. King, Christopher J. McDougle, Kevin B. Sanders, Soo-Jeong Kim, et al. “Predictors of Placebo Response in the Study of Oxytocin in Autism to Improve Reciprocal Social Behaviors.” J Child Adolesc Psychopharmacol 35, no. 4 (May 2025): 202–10. https://doi.org/10.1089/cap.2024.0131.

Ludwig, Andrea L., Zachary P. McKay, Griffin P. Carter, Mark A. Katz, Georgia Howell, Vaibhav Jain, Stephanie Arvai, et al. “Lymphotropic Virotherapy Engages DC and High Endothelial Venule Inflammation to Mediate Cancer In Situ Vaccination.” MedRxiv, April 25, 2025. https://doi.org/10.1101/2025.04.23.25326279.

Newman, Benjamin T., Joshua S. Danoff, Morgan E. Lynch, Stephanie N. Giamberardino, Simon G. Gregory, Jessica J. Connelly, T Jason Druzgal, and James P. Morris. “Epigenetic age acceleration predicts subject-specific white matter degeneration in the human brain.” Aging Cell 24, no. 4 (April 2025): e14426. https://doi.org/10.1111/acel.14426.

Du, Kuo, David S. Umbaugh, Liuyang Wang, Ji Hye Jun, Rajesh K. Dutta, Seh Hoon Oh, Niansheng Ren, et al. “Targeting senescent hepatocytes for treatment of metabolic dysfunction-associated steatotic liver disease and multi-organ dysfunction.” Nat Commun 16, no. 1 (March 28, 2025): 3038. https://doi.org/10.1038/s41467-025-57616-w.

Khasraw, Mustafa, Kirit Singh, Marlene Violette, Anna Corcoran, Emily Rlethen, Kelly Hotchkiss, Chelsea Railton, et al. “A surgical window of opportunity trial evaluating the effect of the PCSK9 inhibitor evolocumab on tumoral MHC-I expression and CD8+ infiltration in glioma.” Research Square, January 22, 2025. https://doi.org/10.21203/rs.3.rs-5822396/v1.

Khasraw, Mustafa, Kirit Singh, Matthew Foster, Marlene Violette, Anna Corcoran, Kelly Hotchkiss, Chelsea Railton, et al. “A surgical window of opportunity trial evaluating the effect of the PCSK9 inhibitor evolocumab on tumoral MHC-I expression and CD8+ infiltration in glioma.” Research Square, 2025. https://doi.org/10.21203/rs.3.rs-5822396/v1.

Lee, Min Jin, Manel Ben Hammouda, Wanying Miao, Arinze E. Okafor, Yingai J. Jin, Huiying Sun, Vaibhav Jain, et al. “UBE2N Is Essential for Maintenance of Skin Homeostasis and Suppression of Inflammation.” J Invest Dermatol 144, no. 12 (December 2024): 2742–53. https://doi.org/10.1016/j.jid.2024.04.017.

Smith, Vanessa, Kevin Stevenson, Tia Wieden, Monika Anand, Annick Desjardins, Roger McLendon, David Ashley, Simon Gregory, and Giselle López. “BIOM-30. NOVEL HISTOLOGIC AND MOLECULAR BIOMARKERS FOR OLIGODENDROGLIOMA.” In Neuro-Oncology, 26:viii26–viii26. Oxford University Press (OUP), 2024. https://doi.org/10.1093/neuonc/noae165.0103.

Blandford, Emily, Jennifer Delegard, Andrew Hardigan, Aditya Mohan, Simon Gregory, and Anoop Patel. “EPCO-42. SINGLE-CELL MULTIOMIC ANALYSIS OF BRAIN METASTASES ACROSS MULTIPLE PRIMARY TUMOR TYPES.” In Neuro-Oncology, 26:viii11–viii11. Oxford University Press (OUP), 2024. https://doi.org/10.1093/neuonc/noae165.0041.

Sati, Satish, Jianhe Huang, Anna E. Kersh, Parker Jones, Olivia Ahart, Christina Murphy, Stephen M. Prouty, et al. “Recruitment of CXCR4+ type 1 innate lymphoid cells distinguishes sarcoidosis from other skin granulomatous diseases.” J Clin Invest 134, no. 17 (September 3, 2024). https://doi.org/10.1172/JCI178711.

Regal, Joshua A., María E. Guerra García, Vaibhav Jain, Vidyalakshmi Chandramohan, David M. Ashley, Simon G. Gregory, Eric M. Thompson, Giselle Y. López, and Zachary J. Reitman. “Publisher Correction: Ganglioglioma deep transcriptomics reveals primitive neuroectoderm neural precursor‑like population.” Acta Neuropathol Commun 12, no. 1 (June 27, 2024): 107. https://doi.org/10.1186/s40478-024-01788-x.

Dalton, George D., Stephen K. Siecinski, Viktoriya D. Nikolova, Gary P. Cofer, Kathryn J. Hornburg, Yi Qi, G Allan Johnson, Yong-Hui Jiang, Sheryl S. Moy, and Simon G. Gregory. “Transcriptome analysis identifies an ASD-Like phenotype in oligodendrocytes and microglia from C58/J amygdala that is dependent on sex and sociability.” Behav Brain Funct 20, no. 1 (June 19, 2024): 14. https://doi.org/10.1186/s12993-024-00240-3.

Graves, Andrew J., Joshua S. Danoff, Minah Kim, Samantha R. Brindley, Amalia M. Skyberg, Stephanie N. Giamberardino, Morgan E. Lynch, et al. “Accelerated epigenetic age is associated with whole-brain functional connectivity and impaired cognitive performance in older adults.” Sci Rep 14, no. 1 (April 26, 2024): 9646. https://doi.org/10.1038/s41598-024-60311-3.

Liu, Mengyi, Zhicheng Ji, Vaibhav Jain, Vanessa L. Smith, Emily Hocke, Anoop P. Patel, Roger E. McLendon, David M. Ashley, Simon G. Gregory, and Giselle Y. López. “Spatial transcriptomics reveals segregation of tumor cell states in glioblastoma and marked immunosuppression within the perinecrotic niche.” Acta Neuropathol Commun 12, no. 1 (April 22, 2024): 64. https://doi.org/10.1186/s40478-024-01769-0.

Epstein, Adrian A., Sara N. Janos, Luca Menozzi, Kelly Pegram, Vaibhav Jain, Logan C. Bisset, Joseph T. Davis, et al. “Subventricular zone stem cell niche injury is associated with intestinal perforation in preterm infants and predicts future motor impairment.” Cell Stem Cell 31, no. 4 (April 4, 2024): 467-483.e6. https://doi.org/10.1016/j.stem.2024.03.001.

Klymyshyn, Dmytro, Vaibhav Jain, Lauren Whaley, Emily Hocke, Bassem Ben Cheikh, Alan Smith, Karen Abramson, et al. “Abstract 5496: Multi-omic spatial analysis of the tumor microenvironment in gliomas.” In Cancer Research, 84:5496–5496. American Association for Cancer Research (AACR), 2024. https://doi.org/10.1158/1538-7445.am2024-5496.

Duchatel, Ryan J., Evangeline R. Jackson, Sarah G. Parackal, Dylan Kiltschewskij, Izac J. Findlay, Abdul Mannan, Dilana E. Staudt, et al. “PI3K/mTOR is a therapeutically targetable genetic dependency in diffuse intrinsic pontine glioma.” J Clin Invest 134, no. 6 (February 6, 2024). https://doi.org/10.1172/JCI170329.

Sati, S., P. Jones, A. Kersh, C. Murphy, M. L. Hedberg, J. Huang, V. Jain, et al. “Specific recruitment of type 1 innate lymphoid cells to mature tertiary lymphoid structures in human sarcoidosis.” In JOURNAL OF INVESTIGATIVE DERMATOLOGY, 144:S131–S131, 2024.

Smith, V., K. Stevenson, T. Wieden, M. Anand, A. Desjardins, R. McLendon, D. Ashley, S. Gregory, and G. Lopez. “Prognostic impact of CDKN2A deletion in oligodendroglioma.” In JOURNAL OF NEUROPATHOLOGY AND EXPERIMENTAL NEUROLOGY, 83:441–42, 2024.

Betancur, Martha I., Ayden Case, Ekaterina Ilich, Nalini Mehta, Sean Meehan, Sabrina Pogrebivsky, Stephen T. Keir, et al. “A neural tract-inspired conduit for facile, on-demand biopsy of glioblastoma.” Neurooncol Adv 6, no. 1 (2024): vdae064. https://doi.org/10.1093/noajnl/vdae064.

Li, Yingkai Kevin, Simon Gregory, Michael Aksu, Karissa Gable, Tabitha Karatz, and Vern Juel. “IMBALANCED PRO-INFLAMMATORY IMMUNE RESPONSES IN SEROPOSITIVE AND SERONEGATIVE MG.” In MUSCLE & NERVE, 70:699–699, 2024.

Lee, Min Jin, Manel Ben Hammouda, Wanying Miao, Arinze Okafor, Yingai Jin, Huiying Sun, Vaibhav Jain, et al. “UBE2N is essential for maintenance of skin homeostasis and suppression of inflammation.,” December 4, 2023. https://doi.org/10.1101/2023.12.01.569631.

Mangoli, Avani, Sophie Wu, Harrison Q. Liu, Michael Aksu, Vaibhav Jain, Bronwen E. Foreman, Joshua A. Regal, et al. “Ataxia-telangiectasia mutated ( Atm ) disruption sensitizes spatially-directed H3.3K27M/TP53 diffuse midline gliomas to radiation therapy.” BioRxiv, October 20, 2023. https://doi.org/10.1101/2023.10.18.562892.

Chao, Agnes S., Pavle Matak, Kelly Pegram, James Powers, Collin Hutson, Rebecca Jo, Laura Dubois, et al. “20-αHydroxycholesterol, an oxysterol in human breast milk, reverses mouse neonatal white matter injury through Gli-dependent oligodendrogenesis.” Cell Stem Cell 30, no. 8 (August 3, 2023): 1054-1071.e8. https://doi.org/10.1016/j.stem.2023.07.010.

Regal, Joshua, Maria Guerra-Garcia, Vaibhav Jain, Vidyalakshmi Chandramohan, David Ashley, Simon Gregory, Eric Thompson, Giselle Lopez, and Zachary Reitman. “LGG-13. GANGLIOGLIOMA DEEP TRANSCRIPTOMICS REVEALS A CD34+ PRIMITIVE NEUROECTODERM NEURAL PRECURSOR-LIKE POPULATION.” In Neuro-Oncology, 25:i58–i58. Oxford University Press (OUP), 2023. https://doi.org/10.1093/neuonc/noad073.223.

Hirano, Minato, Gaddiel Galarza-Muñoz, Chloe Nagasawa, Geraldine Schott, Liuyang Wang, Alejandro L. Antonia, Vaibhav Jain, et al. “The RNA helicase DDX39B activates FOXP3 RNA splicing to control T regulatory cell fate.” Elife 12 (June 1, 2023). https://doi.org/10.7554/eLife.76927.

Guastella, Adam, Kelsie Boulton, Andrew Whitehouse, Yun Song, Rinku Thapa, Simon Gregory, Izabella Pokorski, et al. “540. A Precision Medicine Approach to Oxytocin Nasal Spray in Autism: A Randomized Controlled Trial.” In Biological Psychiatry, 93:S312–S312. Elsevier BV, 2023. https://doi.org/10.1016/j.biopsych.2023.02.780.

Allen, Joseph P., Joshua S. Danoff, Meghan A. Costello, Emily L. Loeb, Alida A. Davis, Gabrielle L. Hunt, Simon G. Gregory, Stephanie N. Giamberardino, and Jessica J. Connelly. “Adolescent peer struggles predict accelerated epigenetic aging in midlife.” Dev Psychopathol 35, no. 2 (May 2023): 912–25. https://doi.org/10.1017/S0954579422000153.

Li, Yingkai, Vern Juel, Tabitha Karatz, Vera George, Jeffrey Guptill, and Simon Gregory. “CD8 T Cell Immune Signatures in Autoimmune Myasthenia Gravis (N6.001).” In Neurology, Vol. 100. Ovid Technologies (Wolters Kluwer Health), 2023. https://doi.org/10.1212/wnl.0000000000203583.

Regal, Joshua A., María E. Guerra García, Vaibhav Jain, Vidyalakshmi Chandramohan, David M. Ashley, Simon G. Gregory, Eric M. Thompson, Giselle Y. López, and Zachary J. Reitman. “Ganglioglioma deep transcriptomics reveals primitive neuroectoderm neural precursor-like population.” Acta Neuropathol Commun 11, no. 1 (March 25, 2023): 50. https://doi.org/10.1186/s40478-023-01548-3.

Khatri, Aaditya, Jamie L. Todd, Fran L. Kelly, Andrew Nagler, Zhicheng Ji, Vaibhav Jain, Simon G. Gregory, Kent J. Weinhold, and Scott M. Palmer. “JAK-STAT activation contributes to cytotoxic T cell-mediated basal cell death in human chronic lung allograft dysfunction.” JCI Insight 8, no. 6 (March 22, 2023). https://doi.org/10.1172/jci.insight.167082.

Xie, Shaojun, Sulbha Choudhari, Chia-Lung Wu, Karen Abramson, David Corcoran, Simon G. Gregory, Jyothi Thimmapuram, Farshid Guilak, and Dianne Little. “Aging and obesity prime the methylome and transcriptome of adipose stem cells for disease and dysfunction.” FASEB J 37, no. 3 (March 2023): e22785. https://doi.org/10.1096/fj.202201413R.

Siecinski, Stephen K., Stephanie N. Giamberardino, Marina Spanos, Annalise C. Hauser, Jason R. Gibson, Tara Chandrasekhar, Maria Del Pilar Trelles, et al. “Genetic and epigenetic signatures associated with plasma oxytocin levels in children and adolescents with autism spectrum disorder.” Autism Res 16, no. 3 (March 2023): 502–23. https://doi.org/10.1002/aur.2884.

Guastella, Adam J., Kelsie A. Boulton, Andrew J. O. Whitehouse, Yun Ju Song, Rinku Thapa, Simon G. Gregory, Izabella Pokorski, et al. “The effect of oxytocin nasal spray on social interaction in young children with autism: a randomized clinical trial.” Mol Psychiatry 28, no. 2 (February 2023): 834–42. https://doi.org/10.1038/s41380-022-01845-8.

Chandramohan, Vidya, Kevin Stevenson, Yen-Rei Andrea Yu, Zachary Reitman, Yiping He, Roger McLendon, Cristina Osorio, et al. “NLRP3+TUMOR-ASSOCIATED MYELOID CELLS ARE ENRICHED IN ASTROCYTIC GLIOMAS AND REPRESENT A THERAPEUTIC VULNERABILITY.” In NEURO-ONCOLOGY, Vol. 25, 2023.

Petty, A. J., A. Cardones, Y. J. Jin, V. Jain, E. Hocke, S. Gregory, and J. Zhang. “Single cell transcriptome reveals complex keratinocyte and immune responses in cutaneous chronic graft-versus-host disease.” In JOURNAL OF INVESTIGATIVE DERMATOLOGY, 143:S266–S266, 2023.

Gelineau-van Waes, J., M. A. van Waes, J. Hallgren, J. Hulen, M. Bredehoeft, A. E. Ashley-Koch, D. Krupp, S. G. Gregory, and H. A. Stessman. “Gene-nutrient interactions that impact magnesium homeostasis increase risk for neural tube defects in mice exposed to dolutegravir.” Front Cell Dev Biol 11 (2023): 1175917. https://doi.org/10.3389/fcell.2023.1175917.

Chen, Tianyi, George Dalton, Seh-Hoon Oh, Raquel Maeso-Diaz, Kuo Du, Rachel A. Meyers, Cynthia Guy, et al. “Hepatocyte Smoothened Activity Controls Susceptibility to Insulin Resistance and Nonalcoholic Fatty Liver Disease.” In Cell Mol Gastroenterol Hepatol, 15:949–70, 2023. https://doi.org/10.1016/j.jcmgh.2022.12.008.

SoRelle, E. D., E. J. Haukenfrers, V. Jain, K. R. Abramson, E. A. Hocke, N. M. Reinoso-Vizcaino, G. Q. Horn, et al. “An EBV-Associated Atypical B Cell Signature in Clinically Isolated Syndrome is Distinct Among Autoimmune and Chronic Infectious Diseases.” In MULTIPLE SCLEROSIS JOURNAL, 29:19–20, 2023.

Gregory, Simon, Vaibhav Jain, Emily Hocke, Karen Abramson, Elizabeth Thomas, Diane Satterfield, Kyle Walsh, Michael Brown, Roger McLendon, and David Ashley. “DECIPHERING THE INTRICATE GLIOBLASTOMA TUMOR MICROENVIRONMENT AND EGFRVIII TRANSCRIPT DISTRIBUTION THROUGH SINGLE-CELL SPATIAL PROFILING.” In NEURO-ONCOLOGY, Vol. 25, 2023.

Lopez, G., M. Liu, K. Abramson, E. Hocke, S. Hilz, J. Lee, G. Zhang, et al. “Spatial Transcriptomic Profiling of Hypercellular Nodules Reveals Activation of Cholesterol Biosynthesis and Synaptogenesis Pathways.” In JOURNAL OF NEUROPATHOLOGY AND EXPERIMENTAL NEUROLOGY, 82:493–493, 2023.

Liu, Mengyi, Karen Abramson, Emily Hocke, Stephanie Hilz, Joseph Costello, Roger McLendon, David Ashley, Simon Gregory, and Giselle Lopez. “HYPERCELLULAR NODULES IN OLIGODENDROGLIOMA REPRESENT POCKETS OF PROLIFERATIVE STEM-LIKE TUMOR CELLS.” In NEURO-ONCOLOGY, Vol. 25, 2023.

Schott, Benjamin H., Liuyang Wang, Xinyu Zhu, Alfred T. Harding, Emily R. Ko, Jeffrey S. Bourgeois, Erica J. Washington, et al. “Single-cell genome-wide association reveals that a nonsynonymous variant in ERAP1 confers increased susceptibility to influenza virus.” Cell Genom 2, no. 11 (November 9, 2022). https://doi.org/10.1016/j.xgen.2022.100207.

Patierno, Brendon M., Wen-Chi Foo, Tyler Allen, Jason A. Somarelli, Kathryn E. Ware, Santosh Gupta, Sandra Wise, et al. “Characterization of a castrate-resistant prostate cancer xenograft derived from a patient of West African ancestry.” In Prostate Cancer Prostatic Dis, 25:513–23, 2022. https://doi.org/10.1038/s41391-021-00460-y.

Leuthner, Tess C., Laura Benzing, Brendan F. Kohrn, Christina M. Bergemann, Michael J. Hipp, Kathleen A. Hershberger, Danielle F. Mello, et al. “Resistance of mitochondrial DNA to cadmium and Aflatoxin B1 damage-induced germline mutation accumulation in C. elegans.” Nucleic Acids Res 50, no. 15 (August 26, 2022): 8626–42. https://doi.org/10.1093/nar/gkac666.

Siecinski, Stephen K., Stephanie N. Giamberardino, Marina Spanos, Annalise C. Hauser, Jason R. Gibson, Tara Chandrasekhar, MD Pilar Trelles, et al. “Genetic and epigenetic signatures associated with plasma oxytocin levels in children and adolescents with autism spectrum disorder.” OpenRxiv, May 30, 2022. https://doi.org/10.1101/2022.05.26.22275542.

Low, Justin T., Vidyalakshmi Chandramohan, Michelle L. Bowie, Michael C. Brown, Matthew S. Waitkus, Aaron Briley, Kevin Stevenson, et al. “Epigenetic STING silencing is developmentally conserved in gliomas and can be rescued by methyltransferase inhibition.” Cancer Cell 40, no. 5 (May 9, 2022): 439–40. https://doi.org/10.1016/j.ccell.2022.04.009.

Dungan, Jennifer R., Xue Qin, Simon G. Gregory, Rhonda Cooper-Dehoff, Julio D. Duarte, Huaizhen Qin, Martha Gulati, et al. “Sex-dimorphic gene effects on survival outcomes in people with coronary artery disease.” Am Heart J Plus 17 (May 2022). https://doi.org/10.1016/j.ahjo.2022.100152.

Allen, Joseph P., Joshua S. Danoff, Meghan A. Costello, Gabrielle L. Hunt, Amanda F. Hellwig, Kathleen M. Krol, Simon G. Gregory, Stephanie N. Giamberardino, Karen Sugden, and Jessica J. Connelly. “Lifetime marijuana use and epigenetic age acceleration: A 17-year prospective examination.” Drug Alcohol Depend 233 (April 1, 2022): 109363. https://doi.org/10.1016/j.drugalcdep.2022.109363.

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Jain, Vaibhav, Wen-Hsuan Yang, Jianli Wu, John D. Roback, Simon G. Gregory, and Jen-Tsan Chi. “Single Cell RNA-Seq Analysis of Human Red Cells.” Front Physiol 13 (2022): 828700. https://doi.org/10.3389/fphys.2022.828700.

Gregory, S. G., S. Arvai, G. D. Dalton, K. Pegram, M. Kanayama, A. S. Chao, G. K. Matsushima, M. L. Shinohara, and E. J. Benner. “Characterizing the immunomodulation and remyelination efficacy of 20-aHydroxycholesterol in pre-clinical models of multiple sclerosis.” In MULTIPLE SCLEROSIS JOURNAL, 28:247–247, 2022.

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Gupta, Santosh, Susan Halabi, Gabor Kemeny, Monika Anand, Paraskevi Giannakakou, David M. Nanus, Daniel J. George, Simon G. Gregory, and Andrew J. Armstrong. “Circulating Tumor Cell Genomic Evolution and Hormone Therapy Outcomes in Men with Metastatic Castration-Resistant Prostate Cancer.” In Mol Cancer Res, 19:1040–50, 2021. https://doi.org/10.1158/1541-7786.MCR-20-0975.

Giarraputo, James, Stephanie Giamberardino, Stephanie Arvai, Sarah Maichle, Christopher Eckstein, L Kristin Newby, and Simon Gregory. “Profiling serum neurofilament light chain and glial fibrillary acidic protein in primary progressive multiple sclerosis.” J Neuroimmunol 354 (May 15, 2021): 577541. https://doi.org/10.1016/j.jneuroim.2021.577541.

Schott, Geraldine, Gaddiel Galarza-Muñoz, Noe Trevino, Xiaoting Chen, Matthew T. Weirauch, Simon G. Gregory, Shelton S. Bradrick, and Mariano A. Garcia-Blanco. “U2AF2 binds IL7R exon 6 ectopically and represses its inclusion.” RNA 27, no. 5 (April 16, 2021): 571–83. https://doi.org/10.1261/rna.078279.120.

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Chen, Tianyi, George D. Dalton, Seh-Hoon Oh, Raquel Maeso Diaz, Kuo Du, Rachel A. Myers, Simon G. Gregory, et al. “SINGLE CELL RNA SEQUENCING DATA FROM MICE IDENTIFIES INHIBITED HEDGEHOG SIGNALING IN HEPATOCYTES AS A CRITICAL EARLY EVENT IN HUMAN NAFLD.” In HEPATOLOGY, 74:142A-142A, 2021.

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Chen, Tianyi, Sehhoon Oh, Simon Gregory, Xiling Shen, and Anna Mae Diehl. “Single-cell omics analysis reveals functional diversification of hepatocytes during liver regeneration.” JCI Insight 5, no. 22 (November 19, 2020). https://doi.org/10.1172/jci.insight.141024.

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Baht, Gurpreet S., Akshay Bareja, David E. Lee, Rajesh R. Rao, Rong Huang, Janet L. Huebner, David B. Bartlett, et al. “Author Correction: Meteorin-like facilitates skeletal muscle repair through a Stat3/IGF-1 mechanism.” Nat Metab 2, no. 8 (August 2020): 794. https://doi.org/10.1038/s42255-020-0257-y.

Chou, Ching-Heng, Vaibhav Jain, Jason Gibson, David E. Attarian, Collin A. Haraden, Christopher B. Yohn, Remi-Martin Laberge, Simon Gregory, and Virginia B. Kraus. “Synovial cell cross-talk with cartilage plays a major role in the pathogenesis of osteoarthritis.” Sci Rep 10, no. 1 (July 2, 2020): 10868. https://doi.org/10.1038/s41598-020-67730-y.

Lee, M., J. Shannon, V. Jain, S. Joost, M. Kasper, D. L. Corcoran, S. G. Gregory, and A. S. MacLeod. “251 Skin epidermal keratinocyte differentiation-associated processes regulate homeostatic antiviral protein expression.” In Journal of Investigative Dermatology, 140:S29–S29. Elsevier BV, 2020. https://doi.org/10.1016/j.jid.2020.03.256.

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Gupta, Santosh, Daniel H. Hovelson, Gabor Kemeny, Susan Halabi, Wen-Chi Foo, Monika Anand, Jason A. Somarelli, et al. “Discordant and heterogeneous clinically relevant genomic alterations in circulating tumor cells vs plasma DNA from men with metastatic castration resistant prostate cancer.” Genes Chromosomes Cancer 59, no. 4 (April 2020): 225–39. https://doi.org/10.1002/gcc.22824.

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Giarraputo, J., V. Jain, S. Arvai, D. Smilek, K. Harris, and S. Gregory. “Immune cell profiles associated with cis progression and stability using rna-seq single-cell analysis.” In MULTIPLE SCLEROSIS JOURNAL, 26:161–62, 2020.

Chen, Tianyi, Seh-Hoon Oh, Simon G. Gregory, Xiling Shen, and Anna Mae Diehl. “DYNAMIC EPIGENETIC REPROGRAMMING ENABLES FUNCTIONAL DIVERSIFICATION OF HEPATOCYTES DURING LIVER REGENERATION.” In HEPATOLOGY, 72:119A-120A, 2020.

Yahara, Yasuhito, Tomasa Barrientos, Yuning J. Tang, Vijitha Puviindran, Puviindran Nadesan, Hongyuan Zhang, Jason R. Gibson, et al. “Erythromyeloid progenitors give rise to a population of osteoclasts that contribute to bone homeostasis and repair.” Nat Cell Biol 22, no. 1 (January 2020): 49–59. https://doi.org/10.1038/s41556-019-0437-8.

Markunas, C. A., A. E. Ashley-Koch, and S. G. Gregory. “Genetics of the chiari I and II malformations.” In Chiari Malformations, 289–97, 2020. https://doi.org/10.1007/978-3-030-44862-2_23.

Jewell, Mark L., Jason R. Gibson, Cynthia D. Guy, Jeongeun Hyun, Kuo Du, Seh-Hoon Oh, Richard T. Premont, et al. “Single-Cell RNA Sequencing Identifies Yes-Associated Protein 1-Dependent Hepatic Mesothelial Progenitors in Fibrolamellar Carcinoma.” Am J Pathol 190, no. 1 (January 2020): 93–107. https://doi.org/10.1016/j.ajpath.2019.09.018.

Abdulrahim, Jawan W., Lydia Coulter Kwee, Elizabeth Grass, Ilene C. Siegler, Redford Williams, Ravi Karra, William E. Kraus, Simon G. Gregory, and Svati H. Shah. “Epigenome-Wide Association Study for All-Cause Mortality in a Cardiovascular Cohort Identifies Differential Methylation in Castor Zinc Finger 1 (CASZ1).” J Am Heart Assoc 8, no. 21 (November 5, 2019): e013228. https://doi.org/10.1161/JAHA.119.013228.

Oh, Seh-Hoon, Mark Jewell, Richard T. Premont, Jason Gibson, Wayne Glover, Simon G. Gregory, David Hsu, Cynthia D. Guy, and Anna Mae Diehl. “Yap1 AS A THERAPEUTIC TARGET IN FIBROLAMELLAR CARCINOMA.” In HEPATOLOGY, 70:888A-889A. WILEY, 2019.

Kwee, Lydia Coulter, Megan L. Neely, Elizabeth Grass, Simon G. Gregory, Matthew T. Roe, E Magnus Ohman, Keith A. A. Fox, et al. “Associations of osteopontin and NT-proBNP with circulating miRNA levels in acute coronary syndrome.” Physiol Genomics 51, no. 10 (October 1, 2019): 506–15. https://doi.org/10.1152/physiolgenomics.00033.2019.

Andersen, S. L., F. B. S. Briggs, J. H. Winnike, Y. Natanzon, S. Maichle, K. J. Knagge, L. K. Newby, and S. G. Gregory. “Metabolome-based signature of disease pathology in MS.” Mult Scler Relat Disord 31 (June 2019): 12–21. https://doi.org/10.1016/j.msard.2019.03.006.

Kousa, Youssef A., Huiping Zhu, Walid D. Fakhouri, Yunping Lei, Akira Kinoshita, Raeuf R. Roushangar, Nicole K. Patel, et al. “The TFAP2A-IRF6-GRHL3 genetic pathway is conserved in neurulation.” Hum Mol Genet 28, no. 10 (May 15, 2019): 1726–37. https://doi.org/10.1093/hmg/ddz010.

Armstrong, Andrew J., Susan Halabi, Jun Luo, David M. Nanus, Paraskevi Giannakakou, Russell Z. Szmulewitz, Daniel C. Danila, et al. “Prospective Multicenter Validation of Androgen Receptor Splice Variant 7 and Hormone Therapy Resistance in High-Risk Castration-Resistant Prostate Cancer: The PROPHECY Study.” J Clin Oncol 37, no. 13 (May 1, 2019): 1120–29. https://doi.org/10.1200/JCO.18.01731.

Tailor, Tina D., Xiayu Rao, Michael J. Campa, Jing Wang, Simon G. Gregory, and Edward F. Patz. “Whole Exome Sequencing of Cell-Free DNA for Early Lung Cancer: A Pilot Study to Differentiate Benign From Malignant CT-Detected Pulmonary Lesions.” Front Oncol 9 (2019): 317. https://doi.org/10.3389/fonc.2019.00317.

Armstrong, Andrew J., Santosh Gupta, Patrick Healy, Gabor Kemeny, Beth Leith, Michael R. Zalutsky, Charles Spritzer, et al. “Pharmacodynamic study of radium-223 in men with bone metastatic castration resistant prostate cancer.” PLoS One 14, no. 5 (2019): e0216934. https://doi.org/10.1371/journal.pone.0216934.

Dhingra, Radhika, Lydia Coulter Kwee, David Diaz-Sanchez, Robert B. Devlin, Wayne Cascio, Elizabeth R. Hauser, Simon Gregory, et al. “Evaluating DNA methylation age on the Illumina MethylationEPIC Bead Chip.” PLoS One 14, no. 4 (2019): e0207834. https://doi.org/10.1371/journal.pone.0207834.

Perkeybile, Allison M., C Sue Carter, Kelly L. Wroblewski, Meghan H. Puglia, William M. Kenkel, Travis S. Lillard, Themistoclis Karaoli, et al. “Early nurture epigenetically tunes the oxytocin receptor.” Psychoneuroendocrinology 99 (January 2019): 128–36. https://doi.org/10.1016/j.psyneuen.2018.08.037.

Towers, Aaron J., Martine W. Tremblay, Leeyup Chung, Xin-Lei Li, Alexandra L. Bey, Wenhao Zhang, Xinyu Cao, et al. “Epigenetic dysregulation of Oxtr in Tet1-deficient mice has implications for neuropsychiatric disorders.” JCI Insight 3, no. 23 (December 6, 2018). https://doi.org/10.1172/jci.insight.120592.

Jewell, Mark, Richard T. Premont, Jason Gibson, Wayne Glover, Timothy A. Dinh, Eliane L. Wauthier, Lola M. Reid, et al. “Yap1 As a Therapeutic Target in Fibrolamellar Carcinoma.” In HEPATOLOGY, 68:1243A-1243A. WILEY, 2018.

Armstrong, Andrew J., Santosh Gupta, Patrick Healy, Gabor Kemeny, Lauren Beth Leith, Michael Zalutsky, Charles Spritzer, et al. “Genomic and phenotypic evidence for prostate cancer osteomimicry in circulating tumor cells from men with metastatic castration resistant prostate cancer (mCRPC) treated with radium-223.” In Journal of Clinical Oncology, 36:5029–5029. American Society of Clinical Oncology (ASCO), 2018. https://doi.org/10.1200/jco.2018.36.15_suppl.5029.

Armstrong, Andrew J., Susan Halabi, Jun Luo, David M. Nanus, Paraskevi Giannakakou, Russell Zelig Szmulewitz, Daniel Costin Danila, et al. “The PROPHECY trial: Multicenter prospective trial of circulating tumor cell (CTC) AR-V7 detection in men with mCRPC receiving abiraterone (A) or enzalutamide (E).” In Journal of Clinical Oncology, 36:5004–5004. American Society of Clinical Oncology (ASCO), 2018. https://doi.org/10.1200/jco.2018.36.15_suppl.5004.

Gupta, Santosh, Daniel H. Hovelson, Scott A. Tomlins, Gabor Kemeny, Chia-Jen Liu, Daniel J. George, Colin Rothwell, et al. “Analysis of genomic alterations in matched circulating tumor cell DNA (CTC DNA) and plasma tumor DNA (ctDNA) in men with metastatic castration resistant prostate cancer (mCRPC).” In Journal of Clinical Oncology, 36:5065–5065. American Society of Clinical Oncology (ASCO), 2018. https://doi.org/10.1200/jco.2018.36.15_suppl.5065.

Gelineau-Van Waes, J., R. T. Riley, K. Voss, A. Ashley-Koch, S. Gregory, A. Moseley, E. Soderblom, J. Maddox, and N. Merritt. “Fumonisin B1 (FB1) and Fingolimod (FTY720): Tortilla Toxin and Oral Therapeutic Target Sphingolipid Pathways during Neural Tube Closure.” In BIRTH DEFECTS RESEARCH, 110:730–730. WILEY, 2018.

Armstrong, Andrew J., Santosh Gupta, Patrick Healy, Gabor Kemeny, Lauren Beth Leith, Michael Zalutsky, Charles Spritzer, et al. “Genomic and phenotypic evidence for prostate cancer osteomimicry in circulating tumor cells from men with metastatic castration resistant prostate cancer (mCRPC) treated with radium-223.” In Journal of Clinical Oncology, 36:160–160. American Society of Clinical Oncology (ASCO), 2018. https://doi.org/10.1200/jco.2018.36.6_suppl.160.

Ward-Caviness, Cavin K., William E. Kraus, Colette Blach, Carol S. Haynes, Elaine Dowdy, Marie Lynn Miranda, Robert Devlin, et al. “Associations Between Residential Proximity to Traffic and Vascular Disease in a Cardiac Catheterization Cohort.” Arterioscler Thromb Vasc Biol 38, no. 1 (January 2018): 275–82. https://doi.org/10.1161/ATVBAHA.117.310003.

Kanayama, Masashi, Shengjie Xu, Keiko Danzaki, Jason R. Gibson, Makoto Inoue, Simon G. Gregory, and Mari L. Shinohara. “Skewing the population balance between lymphoid and myeloid cells by osteopontin isoforms.” In CYTOKINE, 100:161–161. ACADEMIC PRESS LTD- ELSEVIER SCIENCE LTD, 2017.

Kanayama, Masashi, Shengjie Xu, Keiko Danzaki, Jason R. Gibson, Makoto Inoue, Simon G. Gregory, and Mari L. Shinohara. “Skewing of the population balance of lymphoid and myeloid cells by secreted and intracellular osteopontin.” Nat Immunol 18, no. 9 (September 2017): 973–84. https://doi.org/10.1038/ni.3791.

Wang, Alice, Lydia Coulter Kwee, Elizabeth Grass, Megan L. Neely, Simon G. Gregory, Keith A. A. Fox, Paul W. Armstrong, et al. “Whole blood sequencing reveals circulating microRNA associations with high-risk traits in non-ST-segment elevation acute coronary syndrome.” Atherosclerosis 261 (June 2017): 19–25. https://doi.org/10.1016/j.atherosclerosis.2017.03.041.

Afshari, Natalie A., Robert P. Igo, Nathan J. Morris, Dwight Stambolian, Shiwani Sharma, V Lakshmi Pulagam, Steven Dunn, et al. “Genome-wide association study identifies three novel loci in Fuchs endothelial corneal dystrophy.” Nat Commun 8 (March 30, 2017): 14898. https://doi.org/10.1038/ncomms14898.

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Gupta, Santosh, Jing Li, Gabor Kemeny, Rhonda L. Bitting, Joshua Beaver, Jason A. Somarelli, Kathryn E. Ware, Simon Gregory, and Andrew J. Armstrong. “Whole Genomic Copy Number Alterations in Circulating Tumor Cells from Men with Abiraterone or Enzalutamide-Resistant Metastatic Castration-Resistant Prostate Cancer.” Clin Cancer Res 23, no. 5 (March 1, 2017): 1346–57. https://doi.org/10.1158/1078-0432.CCR-16-1211.

Ward-Caviness, Cavin K., Lucas M. Neas, Colette Blach, Carol S. Haynes, Karen LaRocque-Abramson, Elizabeth Grass, Z Elaine Dowdy, et al. “A genome-wide trans-ethnic interaction study links the PIGR-FCAMR locus to coronary atherosclerosis via interactions between genetic variants and residential exposure to traffic.” PLoS One 12, no. 3 (2017): e0173880. https://doi.org/10.1371/journal.pone.0173880.

Becker, Kristian C., Alice Wang, Damian M. Criag, Elizabeth Burns, Simon G. Gregory, Robert W. McGarrah, William E. Kraus, and Svati H. Shah. “Genome-wide Analysis Identifies Genetic Variants Associated With a Novel Inflammatory Cardiovascular Biomarker, GlycA.” In CIRCULATION, Vol. 136, 2017.

Inoue, Makoto, Po-Han Chen, Stephen Siecinski, Qi-Jing Li, Chunlei Liu, Lawrence Steinman, Simon G. Gregory, Eric Benner, and Mari L. Shinohara. “An interferon-β-resistant and NLRP3 inflammasome-independent subtype of EAE with neuronal damage.” Nat Neurosci 19, no. 12 (December 2016): 1599–1609. https://doi.org/10.1038/nn.4421.

Sullivan, Lori L., Kristin A. Maloney, Aaron J. Towers, Simon G. Gregory, and Beth A. Sullivan. “Human centromere repositioning within euchromatin after partial chromosome deletion.” Chromosome Res 24, no. 4 (December 2016): 451–66. https://doi.org/10.1007/s10577-016-9536-6.

Zeng, Yi, Huashuai Chen, Ting Ni, Rongping Ruan, Chao Nie, Xiaomin Liu, Lei Feng, et al. “Interaction Between the FOXO1A-209 Genotype and Tea Drinking Is Significantly Associated with Reduced Mortality at Advanced Ages.” Rejuvenation Res 19, no. 3 (June 2016): 195–203. https://doi.org/10.1089/rej.2015.1737.

Zeng, Yi, Chao Nie, Junxia Min, Xiaomin Liu, Mengmeng Li, Huashuai Chen, Hanshi Xu, et al. “Novel loci and pathways significantly associated with longevity.” Sci Rep 6 (February 25, 2016): 21243. https://doi.org/10.1038/srep21243.

Cote, Sabrina A., Simon G. Gregory, Jason Winnike, Kevin Knagge, Olga Ilkayeva, Thomas O’Connell, James Bain, et al. “Integrated metabolomic and transcriptomic profiles of males with multiple sclerosis.” In MULTIPLE SCLEROSIS JOURNAL, 22:9–10. SAGE PUBLICATIONS LTD, 2016.

Wang, Hanghang, Patrick Pun, Lydia Kwee, Damian Craig, Carol Hanynes, Elizabeth Hauser, Simon Gregory, et al. “Genetic Modifiers of Renal Dysfunction in African-American APOL1 Carriers Identified Through a Genome-Wide Screen.” In CIRCULATION, Vol. 134, 2016.

Dungan, Jennifer R., Xuejun Qin, Benjamin D. Horne, John F. Carlquist, Abanish Singh, Melissa Hurdle, Elizabeth Grass, et al. “Case-Only Survival Analysis Reveals Unique Effects of Genotype, Sex, and Coronary Disease Severity on Survivorship.” PLoS One 11, no. 5 (2016): e0154856. https://doi.org/10.1371/journal.pone.0154856.

Ward-Caviness, Cavin K., Lucas M. Neas, Colette Blach, Carol S. Haynes, Karen LaRocque-Abramson, Elizabeth Grass, Elaine Dowdy, et al. “Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.” PLoS One 11, no. 4 (2016): e0152670. https://doi.org/10.1371/journal.pone.0152670.

Kraus, William E., Deborah M. Muoio, Robert Stevens, Damian Craig, James R. Bain, Elizabeth Grass, Carol Haynes, et al. “Metabolomic Quantitative Trait Loci (mQTL) Mapping Implicates the Ubiquitin Proteasome System in Cardiovascular Disease Pathogenesis.” PLoS Genet 11, no. 11 (November 2015): e1005553. https://doi.org/10.1371/journal.pgen.1005553.

Riley, Ronald T., Olga Torres, Jorge Matute, Simon G. Gregory, Allison E. Ashley-Koch, Jency L. Showker, Trevor Mitchell, Kenneth A. Voss, Joyce R. Maddox, and Janee B. Gelineau-van Waes. “Evidence for fumonisin inhibition of ceramide synthase in humans consuming maize-based foods and living in high exposure communities in Guatemala.” Mol Nutr Food Res 59, no. 11 (November 2015): 2209–24. https://doi.org/10.1002/mnfr.201500499.

Ward-Caviness, Cavin K., William E. Kraus, Colette Blach, Carol S. Haynes, Elaine Dowdy, Marie Lynn Miranda, Robert B. Devlin, et al. “Association of Roadway Proximity with Fasting Plasma Glucose and Metabolic Risk Factors for Cardiovascular Disease in a Cross-Sectional Study of Cardiac Catheterization Patients.” Environ Health Perspect 123, no. 10 (October 2015): 1007–14. https://doi.org/10.1289/ehp.1306980.

Shah, Asad A., Simon G. Gregory, Deidre Krupp, Sheng Feng, Allison Dorogi, Carol Haynes, Elizabeth Grass, et al. “Epigenetic profiling identifies novel genes for ascending aortic aneurysm formation with bicuspid aortic valves.” Heart Surg Forum 18, no. 4 (August 30, 2015): E134–39. https://doi.org/10.1532/hsf.1247.

Cope, Heidi, Melanie E. Garrett, Simon Gregory, and Allison Ashley-Koch. “Pregnancy continuation and organizational religious activity following prenatal diagnosis of a lethal fetal defect are associated with improved psychological outcome.” Prenat Diagn 35, no. 8 (August 2015): 761–68. https://doi.org/10.1002/pd.4603.

Li, Jing, Joshua Beaver, Rhonda Lynn Bitting, Simon Gregory, and Andrew J. Armstrong. “Genomic analysis of circulating tumor cells (CTCs) from men with metastatic castration resistant prostate cancer (mCRPC) in the context of enzalutamide therapy.” In Journal of Clinical Oncology, 33:5042–5042. American Society of Clinical Oncology (ASCO), 2015. https://doi.org/10.1200/jco.2015.33.15_suppl.5042.

Roberson, Elle C., William E. Dowdle, Aysegul Ozanturk, Francesc R. Garcia-Gonzalo, Chunmei Li, Jan Halbritter, Nadia Elkhartoufi, et al. “TMEM231, mutated in orofaciodigital and Meckel syndromes, organizes the ciliary transition zone.” J Cell Biol 209, no. 1 (April 13, 2015): 129–42. https://doi.org/10.1083/jcb.201411087.

Winnike, Jason H., Xiaoli Wei, Kevin J. Knagge, Steven D. Colman, Simon G. Gregory, and Xiang Zhang. “Comparison of GC-MS and GC×GC-MS in the analysis of human serum samples for biomarker discovery.” J Proteome Res 14, no. 4 (April 3, 2015): 1810–17. https://doi.org/10.1021/pr5011923.

Shah, Asad A., Carol Haynes, Damian M. Craig, Jacqueline Sebek, Elizabeth Grass, Karen Abramson, Elizabeth Hauser, et al. “Genetic variants associated with vein graft stenosis after coronary artery bypass grafting.” Heart Surg Forum 18, no. 1 (February 27, 2015): E1–5. https://doi.org/10.1532/hsf.1214.

Lock, Eric F., Karen L. Soldano, Melanie E. Garrett, Heidi Cope, Christina A. Markunas, Herbert Fuchs, Gerald Grant, David B. Dunson, Simon G. Gregory, and Allison E. Ashley-Koch. “Joint eQTL assessment of whole blood and dura mater tissue from individuals with Chiari type I malformation.” BMC Genomics 16, no. 1 (January 22, 2015): 11. https://doi.org/10.1186/s12864-014-1211-8.

Riley, Ronald T., Jency L. Showker, Christine M. Lee, Cody E. Zipperer, Trevor R. Mitchell, Kenneth A. Voss, Nicholas C. Zitomer, et al. “A blood spot method for detecting fumonisin-induced changes in putative sphingolipid biomarkers in LM/Bc mice and humans.” Food Addit Contam Part A Chem Anal Control Expo Risk Assess 32, no. 6 (2015): 934–49. https://doi.org/10.1080/19440049.2015.1027746.

Li, Jing, Simon G. Gregory, Mariano A. Garcia-Blanco, and Andrew J. Armstrong. “Using circulating tumor cells to inform on prostate cancer biology and clinical utility.” Crit Rev Clin Lab Sci 52, no. 4 (2015): 191–210. https://doi.org/10.3109/10408363.2015.1023430.

Torres, O., J. Matute, J. Gelineau-Van Waes, J. R. Maddox, S. G. Gregory, A. E. Ashley-Koch, J. L. Showker, K. A. Voss, and R. T. Riley. “Human health implications from co-exposure to aflatoxins and fumonisins in maize-based foods in Latin America: Guatemala as a case study.” World Mycotoxin Journal 8, no. 2 (January 1, 2015): 143–59. https://doi.org/10.3920/WMJ2014.1736.

Krupp, Deidre R., Karen L. Soldano, Melanie E. Garrett, Heidi Cope, Allison E. Ashley-Koch, and Simon G. Gregory. “Missing genetic risk in neural tube defects: can exome sequencing yield an insight?” Birth Defects Res A Clin Mol Teratol 100, no. 8 (August 2014): 642–46. https://doi.org/10.1002/bdra.23276.

Markunas, Christina A., Eric Lock, Karen Soldano, Heidi Cope, Chien-Kuang C. Ding, David S. Enterline, Gerald Grant, Herbert Fuchs, Allison E. Ashley-Koch, and Simon G. Gregory. “Identification of Chiari Type I Malformation subtypes using whole genome expression profiles and cranial base morphometrics.” BMC Med Genomics 7 (June 25, 2014): 39. https://doi.org/10.1186/1755-8794-7-39.

Li, Yi-Ju, Mollie A. Minear, Xuejun Qin, Jacqueline Rimmler, Michael A. Hauser, R Rand Allingham, Robert P. Igo, et al. “Mitochondrial polymorphism A10398G and Haplogroup I are associated with Fuchs' endothelial corneal dystrophy.” Invest Ophthalmol Vis Sci 55, no. 7 (June 10, 2014): 4577–84. https://doi.org/10.1167/iovs.13-13517.

Li, Jing, Joshua Beaver, Rhonda Lynn Bitting, Simon Gregory, and Andrew J. Armstrong. “Genomic analysis of circulating tumor cells (CTCs) from men with metastatic castration resistant prostate cancer (mCRPC) in the context of enzalutamide therapy.” In Journal of Clinical Oncology, 32:e16059–e16059. American Society of Clinical Oncology (ASCO), 2014. https://doi.org/10.1200/jco.2014.32.15_suppl.e16059.

Torres, Olga, Jorge Matute, Janee Gelineau-van Waes, Joyce R. Maddox, Simon G. Gregory, Allison E. Ashley-Koch, Jency L. Showker, Nicholas C. Zitomer, Kenneth A. Voss, and Ronald T. Riley. “Urinary fumonisin B1 and estimated fumonisin intake in women from high- and low-exposure communities in Guatemala.” Mol Nutr Food Res 58, no. 5 (May 2014): 973–83. https://doi.org/10.1002/mnfr.201300481.

Miranda, Marie Lynn, Rebecca Anthopolos, and Simon G. Gregory. “Association of autism with induced or augmented childbirth.” Am J Obstet Gynecol 210, no. 5 (May 2014): 492–93. https://doi.org/10.1016/j.ajog.2013.12.038.

McGarrah, Robert, Damian M. Craig, Carol Haynes, Elizabeth Hauser, Christopher B. Newgard, Simon G. Gregory, William Kraus, and Svati Shah. “OMICS PROFILING HIGHLIGHTS ENDOPLASMIC RETICULUM-ASSOCIATED DEGRADATION AND UBIQUITIN PROTEASOME PATHWAYS IN INSULIN RESISTANCE AND GLYCEMIC CONTROL.” Journal of the American College of Cardiology 63, no. 12 (April 2014): A1600–A1600. https://doi.org/10.1016/s0735-1097(14)61603-x.

Gregory, Simon G. “Genetic predisposition of behavioral response.” Proc Natl Acad Sci U S A 111, no. 5 (February 4, 2014): 1672–73. https://doi.org/10.1073/pnas.1323421111.

Miranda, Marie Lynn, Rebecca Anthopolos, and Simon G. Gregory. “Induction or augmentation of labor and autism--reply.” JAMA Pediatr 168, no. 2 (February 2014): 191–92. https://doi.org/10.1001/jamapediatrics.2013.4792.

Armstrong, Andrew J., Jing Li, Joshua Beaver, Rhonda Lynn Bitting, and Simon Gregory. “Genomic analysis of circulating tumor cells (CTCs) from men with metastatic castration resistant prostate cancer (mCRPC) in the context of enzalutamide therapy.” In Journal of Clinical Oncology, 32:65–65. American Society of Clinical Oncology (ASCO), 2014. https://doi.org/10.1200/jco.2014.32.4_suppl.65.

Markunas, Christina A., David S. Enterline, Kaitlyn Dunlap, Karen Soldano, Heidi Cope, Jeffrey Stajich, Gerald Grant, Herbert Fuchs, Simon G. Gregory, and Allison E. Ashley-Koch. “Genetic evaluation and application of posterior cranial fossa traits as endophenotypes for Chiari type I malformation.” Ann Hum Genet 78, no. 1 (January 2014): 1–12. https://doi.org/10.1111/ahg.12041.

Gregory, S. G. “The epigenetics of Autism-Running beyond the bases.” In Frontiers in Autism Research New Horizons for Diagnosis and Treatment, 303–33, 2014. https://doi.org/10.1142/9789814602167_0013.

Shah, Svati H., Lydia C. Kwee, Elizabeth A. Grass, William E. Kraus, and Simon G. Gregory. “DNA Methylation Profiling Identifies Novel Epigenetic Markers of Cardiovascular Events.” In CIRCULATION, Vol. 130, 2014.

Gregory, Simon G., Rebecca Anthopolos, Claire E. Osgood, Chad A. Grotegut, and Marie Lynn Miranda. “Association of Autism With Induced or Augmented Childbirth in North Carolina Birth Record (1990–1998) and Education Research (1997–2007) Databases.” Obstetrical & Gynecological Survey 69, no. 1 (January 2014): 7–9. https://doi.org/10.1097/01.ogx.0000442814.50107.fa.

Connelly, Jessica J., Olga A. Cherepanova, Jennifer F. Doss, Themistoclis Karaoli, Travis S. Lillard, Christina A. Markunas, Sarah Nelson, et al. “Epigenetic regulation of COL15A1 in smooth muscle cell replicative aging and atherosclerosis.” Hum Mol Genet 22, no. 25 (December 20, 2013): 5107–20. https://doi.org/10.1093/hmg/ddt365.

Ward-Caviness, Cavin, Carol Haynes, Colette Blach, Elaine Dowdy, Simon G. Gregory, Svati H. Shah, Benjamin D. Horne, William E. Kraus, and Elizabeth R. Hauser. “Gene-smoking interactions in multiple Rho-GTPase pathway genes in an early-onset coronary artery disease cohort.” Hum Genet 132, no. 12 (December 2013): 1371–82. https://doi.org/10.1007/s00439-013-1339-7.

Shah, Svati H., Lydia Kwee, Nathan Stitziel, Elizabeth R. Hauser, Carol Haynes, Sekar Kathiresan, Simon G. Gregory, and William E. Kraus. “Rare Variants Identified With Whole Exome Chip Genotyping Are Associated With Insulin Resistance and Glycemic Control.” In CIRCULATION, Vol. 128. LIPPINCOTT WILLIAMS & WILKINS, 2013.

Gregory, Simon G., Rebecca Anthopolos, Claire E. Osgood, Chad A. Grotegut, and Marie Lynn Miranda. “Association of autism with induced or augmented childbirth in North Carolina Birth Record (1990-1998) and Education Research (1997-2007) databases.” JAMA Pediatr 167, no. 10 (October 2013): 959–66. https://doi.org/10.1001/jamapediatrics.2013.2904.

Soldano, Karen L., Melanie E. Garrett, Heidi L. Cope, J Michael Rusnak, Nathen J. Ellis, Kaitlyn L. Dunlap, Marcy C. Speer, Simon G. Gregory, and Allison E. Ashley-Koch. “Genetic association analyses of nitric oxide synthase genes and neural tube defects vary by phenotype.” Birth Defects Res B Dev Reprod Toxicol 98, no. 5 (October 2013): 365–73. https://doi.org/10.1002/bdrb.21079.

Zeng, Yi, Lingguo Cheng, Ling Zhao, Qihua Tan, Qiushi Feng, Huashuai Chen, Ke Shen, et al. “Interactions between social/ behavioral factors and ADRB2 genotypes may be associated with health at advanced ages in China.” BMC Geriatr 13 (September 9, 2013): 91. https://doi.org/10.1186/1471-2318-13-91.

Cope, Heidi, Kelly McMahon, Elizabeth Heise, Sonja Eubanks, Melanie Garrett, Simon Gregory, and Allison Ashley-Koch. “Outcome and life satisfaction of adults with myelomeningocele.” Disabil Health J 6, no. 3 (July 2013): 236–43. https://doi.org/10.1016/j.dhjo.2012.12.003.

Sikich, Linmarie, Cheryl Alderman, Lindsey Hazzard, Terrence C. Bethea, Simon Gregory, and Jacqueline Johnson. “Pilot Study of Sustained Oxytocin Treatment in Children and Adolescents with Autistic Disorder.” In BIOLOGICAL PSYCHIATRY, 73:145S-145S. ELSEVIER SCIENCE INC, 2013.

Kraus, William E., Sheng Feng, Elizabeth R. Hauser, Simon G. Gregory, Carol Haynes, Z. E. Dowdy, Damian M. Craig, and Svati H. Shah. “Association of Gene Expression Signatures with Small Molecule Metabolic Intermediates that Predict Cardiovascular Mortality in CATHGEN.” In CIRCULATION, Vol. 127. LIPPINCOTT WILLIAMS & WILKINS, 2013.

Markunas, C. A., A. E. Ashley-Koch, and S. G. Gregory. “Genetics of the Chiari i and II malformations.” In Chiari Malformations, 9781461463696:93–101, 2013. https://doi.org/10.1007/978-1-4614-6369-6_7.

Markunas, Christina A., Karen Soldano, Kaitlyn Dunlap, Heidi Cope, Edgar Asiimwe, Jeffrey Stajich, David Enterline, et al. “Stratified whole genome linkage analysis of Chiari type I malformation implicates known Klippel-Feil syndrome genes as putative disease candidates.” PLoS One 8, no. 4 (2013): e61521. https://doi.org/10.1371/journal.pone.0061521.

Evsyukova, Irina, Shelton S. Bradrick, Simon G. Gregory, and Mariano A. Garcia-Blanco. “Cleavage and polyadenylation specificity factor 1 (CPSF1) regulates alternative splicing of interleukin 7 receptor (IL7R) exon 6.” RNA 19, no. 1 (January 2013): 103–15. https://doi.org/10.1261/rna.035410.112.

Minear, Mollie A., Yi-Ju Li, Jacqueline Rimmler, Elmer Balajonda, Shera Watson, R Rand Allingham, Michael A. Hauser, Gordon K. Klintworth, Natalie A. Afshari, and Simon G. Gregory. “Genetic screen of African Americans with Fuchs endothelial corneal dystrophy.” Mol Vis 19 (2013): 2508–16.

Nolan, Daniel, William E. Kraus, Elizabeth Hauser, Yi-Ju Li, Dana K. Thompson, Jessica Johnson, Hsiang-Cheng Chen, et al. “Genome-wide linkage analysis of cardiovascular disease biomarkers in a large, multigenerational family.” PLoS One 8, no. 8 (2013): e71779. https://doi.org/10.1371/journal.pone.0071779.

Ward-Caviness, Cavin, Lucas Neas, Carol Haynes, Colette Blach, Elizabeth Burns, Karen LaRocque-Abramson, Elaine Dowdy, et al. “Genetic Variants in the Bone Morphogenic Protein (BMP) Family of Genes Interact with Mobile Source Air Pollution to Increase Risk of Peripheral Arterial Disease.” CIRCULATION 126, no. 21 (November 20, 2012).

Shah, Svati H., Sheng Feng, Elizabeth Grass, Carol Haynes, Megan Chryst-Ladd, Damian Craig, Elizabeth R. Hauser, Christopher B. Newgard, William E. Kraus, and Simon G. Gregory. “Integration of Whole Genome Methylation with Metabolomics Identifies Novel Cardiovascular Disease Genes.” CIRCULATION 126, no. 21 (November 20, 2012).

Krupp, Deidre R., Pu-Ting Xu, Sophie Thomas, Andrew Dellinger, Heather C. Etchevers, Michel Vekemans, John R. Gilbert, et al. “Transcriptome profiling of genes involved in neural tube closure during human embryonic development using long serial analysis of gene expression (long-SAGE).” Birth Defects Res A Clin Mol Teratol 94, no. 9 (September 2012): 683–92. https://doi.org/10.1002/bdra.23040.

Riley, Ronald T., Olga Torres, Jency L. Showker, Nicholas C. Zitomer, Jorge Matute, Kenneth A. Voss, Janee Gelineau-van Waes, Joyce R. Maddox, Simon G. Gregory, and Allison E. Ashley-Koch. “The kinetics of urinary fumonisin B1 excretion in humans consuming maize-based diets.” Mol Nutr Food Res 56, no. 9 (September 2012): 1445–55. https://doi.org/10.1002/mnfr.201200166.

Markunas, Christina A., R Shane Tubbs, Roham Moftakhar, Allison E. Ashley-Koch, Simon G. Gregory, W Jerry Oakes, Marcy C. Speer, and Bermans J. Iskandar. “Clinical, radiological, and genetic similarities between patients with Chiari Type I and Type 0 malformations.” J Neurosurg Pediatr 9, no. 4 (April 2012): 372–78. https://doi.org/10.3171/2011.12.PEDS11113.

Nolan, Daniel K., Beth Sutton, Carol Haynes, Jessica Johnson, Jacqueline Sebek, Elaine Dowdy, David Crosslin, et al. “Fine mapping of a linkage peak with integration of lipid traits identifies novel coronary artery disease genes on chromosome 5.” BMC Genet 13 (February 27, 2012): 12. https://doi.org/10.1186/1471-2156-13-12.

Lin, Ningjing, Chunhui Di, Kathy Bortoff, Jinrong Fu, Peter Truszkowski, Patrick Killela, Chris Duncan, et al. “Deletion or epigenetic silencing of AJAP1 on 1p36 in glioblastoma.” Mol Cancer Res 10, no. 2 (February 2012): 208–17. https://doi.org/10.1158/1541-7786.MCR-10-0109.

Feng, Jie, Jianyi Zhang, Ming Liu, Gang Wan, Keyan Qi, Chenguang Zheng, Zeping Lv, et al. “Association of mtDNA haplogroup F with healthy longevity in the female Chuang population, China.” Exp Gerontol 46, no. 12 (December 2011): 987–93. https://doi.org/10.1016/j.exger.2011.09.001.

Shah, Asad A., Damian M. Craig, Carol Haynes, Jacqueline K. Sebek, Elizabeth Grass, Karen Abramson, Peter K. Smith, et al. “Genome-Wide Association Identifies Genetic Variants Associated With Vein Graft Stenosis After Coronary Artery Bypass Grafting.” In CIRCULATION, Vol. 124. LIPPINCOTT WILLIAMS & WILKINS, 2011.

Gregory, S. G. “Genomic Rearrangements in Autism: The Contribution of Copy Number Loss and Gain to the Etiology of Autism Spectrum Disorders.,” 52:S17–S17. WILEY-BLACKWELL, 2011.

Hara, Makoto R., Jeffrey J. Kovacs, Erin J. Whalen, Sudarshan Rajagopal, Ryan T. Strachan, Wayne Grant, Aaron J. Towers, et al. “A stress response pathway regulates DNA damage through β2-adrenoreceptors and β-arrestin-1.” Nature 477, no. 7364 (August 21, 2011): 349–53. https://doi.org/10.1038/nature10368.

Minear, Mollie A., David R. Crosslin, Beth S. Sutton, Jessica J. Connelly, Sarah C. Nelson, Shera Gadson-Watson, Tianyuan Wang, et al. “Polymorphic variants in tenascin-C (TNC) are associated with atherosclerosis and coronary artery disease.” Hum Genet 129, no. 6 (June 2011): 641–54. https://doi.org/10.1007/s00439-011-0959-z.

Li, Yi-Ju, Mollie A. Minear, Jacqueline Rimmler, Bei Zhao, Elmer Balajonda, Michael A. Hauser, R Rand Allingham, et al. “Replication of TCF4 through association and linkage studies in late-onset Fuchs endothelial corneal dystrophy.” PLoS One 6, no. 4 (April 20, 2011): e18044. https://doi.org/10.1371/journal.pone.0018044.

Sun, Albert Y., Jason I. Koontz, Svati H. Shah, Jonathan P. Piccini, Kent R. Nilsson, Damian Craig, Carol Haynes, Simon G. Gregory, Patrick M. Hranitzky, and Geoffrey S. Pitt. “The S1103Y cardiac sodium channel variant is associated with implantable cardioverter-defibrillator events in blacks with heart failure and reduced ejection fraction.” Circ Cardiovasc Genet 4, no. 2 (April 2011): 163–68. https://doi.org/10.1161/CIRCGENETICS.110.958652.

Jin, Genglin, Stephen Cook, Bo Cui, William C. Chen, Stephen T. Keir, Patrick Killela, Chunhui Di, et al. “HDMX regulates p53 activity and confers chemoresistance to 3-bis(2-chloroethyl)-1-nitrosourea.” Neuro Oncol 12, no. 9 (September 2010): 956–66. https://doi.org/10.1093/neuonc/noq045.

Duncan, Christopher G., Patrick J. Killela, Cathy A. Payne, Benjamin Lampson, William C. Chen, Jeff Liu, David Solomon, et al. “Integrated genomic analyses identify ERRFI1 and TACC3 as glioblastoma-targeted genes.” Oncotarget 1, no. 4 (August 2010): 265–77. https://doi.org/10.18632/oncotarget.137.

Zhang, Lisheng, Jessica J. Connelly, Karsten Peppel, Leigh Brian, Svati H. Shah, Sarah Nelson, David R. Crosslin, et al. “Aging-related atherosclerosis is exacerbated by arterial expression of tumor necrosis factor receptor-1: evidence from mouse models and human association studies.” Hum Mol Genet 19, no. 14 (July 15, 2010): 2754–66. https://doi.org/10.1093/hmg/ddq172.

Vogazianou, Artemis P., Raymond Chan, L Magnus Bäcklund, Danita M. Pearson, Lu Liu, Cordelia F. Langford, Simon G. Gregory, V Peter Collins, and Koichi Ichimura. “Distinct patterns of 1p and 19q alterations identify subtypes of human gliomas that have different prognoses.” Neuro Oncol 12, no. 7 (July 2010): 664–78. https://doi.org/10.1093/neuonc/nop075.

Fraser, Heather I., Calliope A. Dendrou, Barry Healy, Daniel B. Rainbow, Sarah Howlett, Luc J. Smink, Simon Gregory, et al. “Nonobese diabetic congenic strain analysis of autoimmune diabetes reveals genetic complexity of the Idd18 locus and identifies Vav3 as a candidate gene.” J Immunol 184, no. 9 (May 1, 2010): 5075–84. https://doi.org/10.4049/jimmunol.0903734.

Minear, M. A., N. A. Afshari, E. Balajonda, B. Zhao, J. Rimmler, Y. -. J. Li, G. K. Klintworth, and S. G. Gregory. “Analysis of SLC4A11 and COL8A2 Mutations in Fuchs Endothelial Corneal Dystrophy (FECD).” In INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE, Vol. 51. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2010.

Chen, Hsiang-Cheng, Virginia Byers Kraus, Yi-Ju Li, Sarah Nelson, Carol Haynes, Jessica Johnson, Thomas Stabler, et al. “Genome-wide linkage analysis of quantitative biomarker traits of osteoarthritis in a large, multigenerational extended family.” Arthritis Rheum 62, no. 3 (March 2010): 781–90. https://doi.org/10.1002/art.27288.

Riazuddin, S Amer, Norann A. Zaghloul, Amr Al-Saif, Lisa Davey, Bill H. Diplas, Danielle N. Meadows, Allen O. Eghrari, et al. “Missense mutations in TCF8 cause late-onset Fuchs corneal dystrophy and interact with FCD4 on chromosome 9p.” Am J Hum Genet 86, no. 1 (January 2010): 45–53. https://doi.org/10.1016/j.ajhg.2009.12.001.

Evsyukova, Irina, Jason A. Somarelli, Simon G. Gregory, and Mariano A. Garcia-Blanco. “Alternative splicing in multiple sclerosis and other autoimmune diseases.” RNA Biol 7, no. 4 (2010): 462–73. https://doi.org/10.4161/rna.7.4.12301.

Gregory, Simon G., Jessica J. Connelly, Aaron J. Towers, Jessica Johnson, Dhani Biscocho, Christina A. Markunas, Carla Lintas, et al. “Genomic and epigenetic evidence for oxytocin receptor deficiency in autism.” BMC Med 7 (October 22, 2009): 62. https://doi.org/10.1186/1741-7015-7-62.

McCauley, J. L., R. L. Zuvich, Y. Bradford, S. J. Kenealy, N. Schnetz-Boutaud, S. G. Gregory, S. L. Hauser, et al. “Follow-up examination of linkage and association to chromosome 1q43 in multiple sclerosis.” Genes Immun 10, no. 7 (October 2009): 624–30. https://doi.org/10.1038/gene.2009.53.

Wang, Tianyuan, Terrence S. Furey, Jessica J. Connelly, Shihao Ji, Sarah Nelson, Steffen Heber, Simon G. Gregory, and Elizabeth R. Hauser. “A general integrative genomic feature transcription factor binding site prediction method applied to analysis of USF1 binding in cardiovascular disease.” Hum Genomics 3, no. 3 (April 2009): 221–35. https://doi.org/10.1186/1479-7364-3-3-221.

Afshari, Natalie A., Yi-Ju Li, Margaret A. Pericak-Vance, Simon Gregory, and Gordon K. Klintworth. “Genome-wide linkage scan in fuchs endothelial corneal dystrophy.” Invest Ophthalmol Vis Sci 50, no. 3 (March 2009): 1093–97. https://doi.org/10.1167/iovs.08-1839.

Crosslin, David R., Svati H. Shah, Sarah C. Nelson, Carol S. Haynes, Jessica J. Connelly, Shera Gadson, Pascal J. Goldschmidt-Clermont, et al. “Genetic effects in the leukotriene biosynthesis pathway and association with atherosclerosis.” Hum Genet 125, no. 2 (March 2009): 217–29. https://doi.org/10.1007/s00439-008-0619-0.

Shah, Svati H., Neil J. Freedman, Lisheng Zhang, David R. Crosslin, David H. Stone, Carol Haynes, Jessica Johnson, et al. “Neuropeptide Y gene polymorphisms confer risk of early-onset atherosclerosis.” PLoS Genet 5, no. 1 (January 2009): e1000318. https://doi.org/10.1371/journal.pgen.1000318.

Maier, Lisa M., Christopher E. Lowe, Jason Cooper, Kate Downes, David E. Anderson, Christopher Severson, Pamela M. Clark, et al. “IL2RA genetic heterogeneity in multiple sclerosis and type 1 diabetes susceptibility and soluble interleukin-2 receptor production.” PLoS Genet 5, no. 1 (January 2009): e1000322. https://doi.org/10.1371/journal.pgen.1000322.

Gregory, S. G. “Mapping techniques,” December 1, 2008, 291–310. https://doi.org/10.1007/978-1-60327-375-6_20.

Shah, Svati H., Elizabeth R. Hauser, David Crosslin, Liyong Wang, Carol Haynes, Jessica Connelly, Sarah Nelson, et al. “ALOX5AP variants are associated with in-stent restenosis after percutaneous coronary intervention.” Atherosclerosis 201, no. 1 (November 2008): 148–54. https://doi.org/10.1016/j.atherosclerosis.2008.01.011.

Goswami, Robi, Beth S. Sutton, Cynthia Rouf, Sarah Nelson, Carol Haynes, Jessica Johnson, Pascal Goldschmidt-Clermont, et al. “Biliverdin Reductase Genetic Polymorphisms are Associated with Early-Onset Coronary Artery Disease In Two Datasets.” CIRCULATION 118, no. 18 (October 28, 2008): S389–90.

Deak, Kristen L., Deborah G. Siegel, Timothy M. George, Simon Gregory, Allison Ashley-Koch, Marcy C. Speer, and NTD Collaborative Group. “Further evidence for a maternal genetic effect and a sex-influenced effect contributing to risk for human neural tube defects.” Birth Defects Res A Clin Mol Teratol 82, no. 10 (October 2008): 662–69. https://doi.org/10.1002/bdra.20511.

Wang, L., E. R. Hauser, S. H. Shah, D. Seo, P. Sivashanmugam, S. T. Exum, S. G. Gregory, et al. “Polymorphisms of the tumor suppressor gene LSAMP are associated with left main coronary artery disease.” Ann Hum Genet 72, no. Pt 4 (July 2008): 443–53. https://doi.org/10.1111/j.1469-1809.2008.00433.x.

Stamm, Demetra S., Deborah G. Siegel, Lorraine Mehltretter, Jessica J. Connelly, Alison Trott, Nathen Ellis, Victoria Zismann, et al. “Refinement of 2q and 7p loci in a large multiplex NTD family.” Birth Defects Res A Clin Mol Teratol 82, no. 6 (June 2008): 441–52. https://doi.org/10.1002/bdra.20462.

Kennerly, Erin, Anne Ballmann, Stanton Martin, Russ Wolfinger, Simon Gregory, Michael Stoskopf, and Greg Gibson. “A gene expression signature of confinement in peripheral blood of red wolves (Canis rufus).” Mol Ecol 17, no. 11 (June 2008): 2782–91. https://doi.org/10.1111/j.1365-294X.2008.03775.x.

Sutton, Beth S., David R. Crosslin, Svati H. Shah, Sarah C. Nelson, Anthony Bassil, A Brent Hale, Carol Haynes, et al. “Comprehensive genetic analysis of the platelet activating factor acetylhydrolase (PLA2G7) gene and cardiovascular disease in case-control and family datasets.” Hum Mol Genet 17, no. 9 (May 1, 2008): 1318–28. https://doi.org/10.1093/hmg/ddn020.

Connelly, Jessica J., Svati H. Shah, Jennifer F. Doss, Shera Gadson, Sarah Nelson, David R. Crosslin, A Brent Hale, et al. “Genetic and functional association of FAM5C with myocardial infarction.” BMC Med Genet 9 (April 22, 2008): 33. https://doi.org/10.1186/1471-2350-9-33.

Ichimura, K., A. P. Vogazianou, L. Liu, D. M. Pearson, L. M. Bäcklund, K. Plant, K. Baird, C. F. Langford, S. G. Gregory, and V. P. Collins. “1p36 is a preferential target of chromosome 1 deletions in astrocytic tumours and homozygously deleted in a subset of glioblastomas.” Oncogene 27, no. 14 (March 27, 2008): 2097–2108. https://doi.org/10.1038/sj.onc.1210848.

Wang, Liyong, Elizabeth R. Hauser, David Crosslin, Sarah Nelson, A. B. Hale, Simon G. Gregory, Svati H. Shah, William E. Kraus, Pascal J. Goldschmidt-Clermont, and Jeffery M. Vance. “Genomic convergence identified CAPG and VAMP8 as candidate genes for CAD.” In CIRCULATION, 116:807–807. LIPPINCOTT WILLIAMS & WILKINS, 2007.

Gregory, Simon G., Silke Schmidt, Puneet Seth, Jorge R. Oksenberg, John Hart, Angela Prokop, Stacy J. Caillier, et al. “Interleukin 7 receptor alpha chain (IL7R) shows allelic and functional association with multiple sclerosis.” Nat Genet 39, no. 9 (September 2007): 1083–91. https://doi.org/10.1038/ng2103.

International Multiple Sclerosis Genetics Consortium, David A. Hafler, Alastair Compston, Stephen Sawcer, Eric S. Lander, Mark J. Daly, Philip L. De Jager, et al. “Risk alleles for multiple sclerosis identified by a genomewide study.” N Engl J Med 357, no. 9 (August 30, 2007): 851–62. https://doi.org/10.1056/NEJMoa073493.

McCauley, Jacob L., Shannon J. Kenealy, Elliott H. Margulies, Nathalie Schnetz-Boutaud, Simon G. Gregory, Stephen L. Hauser, Jorge R. Oksenberg, Margaret A. Pericak-Vance, Jonathan L. Haines, and Douglas P. Mortlock. “SNPs in Multi-species Conserved Sequences (MCS) as useful markers in association studies: a practical approach.” BMC Genomics 8 (August 6, 2007): 266. https://doi.org/10.1186/1471-2164-8-266.

Wang, Liyong, Elizabeth R. Hauser, Svati H. Shah, Margaret A. Pericak-Vance, Carol Haynes, David Crosslin, Marco Harris, et al. “Peakwide mapping on chromosome 3q13 identifies the kalirin gene as a novel candidate gene for coronary artery disease.” Am J Hum Genet 80, no. 4 (April 2007): 650–63. https://doi.org/10.1086/512981.

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