Erich David Jarvis
Adjunct Professor in the Dept. of Neurobiology
Dr. Jarvis' laboratory studies the neurobiology of vocal communication. Emphasis is placed on the molecular pathways involved in the perception and production of learned vocalizations. They use an integrative approach that combines behavioral, anatomical, electrophysiological and molecular biological techniques. The main animal model used is songbirds, one of the few vertebrate groups that evolved the ability to learn vocalizations. The generality of the discoveries is tested in other vocal learning orders, such as parrots and hummingbirds, as well as non-vocal learners, such as pigeons and non-human primates. Some of the questions require performing behavior/molecular biology experiments in freely ranging animals, such as hummingbirds in tropical forest of Brazil. Recent results show that in songbirds, parrots and hummingbirds, perception and production of song are accompanied by anatomically distinct patterns of gene expression. All three groups were found to exhibit vocally-activated gene expression in exactly 7 forebrain nuclei that are very similar to each other. These structures for vocal learning and production are thought to have evolved independently within the past 70 million years, since they are absent from interrelated non-vocal learning orders. One structure, Area X of the basal ganglia's striatum in songbirds, shows large differential gene activation depending on the social context in which the bird sings. These differences may reflect a semantic content of song, perhaps similar to human language.
The overall goal of the research is to advance knowledge of the neural mechanisms for vocal learning and basic mechanisms of brain function. These goals are further achieved by combined collaborative efforts with the laboratories of Drs. Mooney and Nowicki at Duke University, who study respectively behavior and electrophysiological aspects of songbird vocal communication.
The overall goal of the research is to advance knowledge of the neural mechanisms for vocal learning and basic mechanisms of brain function. These goals are further achieved by combined collaborative efforts with the laboratories of Drs. Mooney and Nowicki at Duke University, who study respectively behavior and electrophysiological aspects of songbird vocal communication.
Current Appointments & Affiliations
- Adjunct Professor in the Dept. of Neurobiology, Neurobiology, Basic Science Departments 2017
- Faculty Network Member of the Duke Institute for Brain Sciences, Duke Institute for Brain Sciences, University Institutes and Centers 2008
Contact Information
- Box 3209 Med Ctr, Durham, NC 27710
- The Rockefeller University, Box 54, 1230 York Avenue, New York, NY 10065
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jarvis@neuro.duke.edu
(212) 327-8806
- Background
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Education, Training, & Certifications
- Postdoctoral Fellow, Department Of Neurobiology, Rockefeller University 1995 - 1998
- Ph.D., Rockefeller University 1995
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Duke Appointment History
- Professor of Neurobiology, Neurobiology, Basic Science Departments 2016 - 2017
- Associate Professor of Neurobiology, Neurobiology, Basic Science Departments 2005 - 2016
- Assistant Professor of Neurobiology, Neurobiology, Basic Science Departments 1998 - 2005
- Recognition
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In the News
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FEB 15, 2016 Duke Research Blog -
JAN 7, 2016 -
JAN 6, 2016 Molecular Biology of the Cell -
JAN 5, 2016 Molecular Biology of the Cell -
AUG 14, 2015 NPR’s “All Things Considered" -
JUL 17, 2015 UNC-TV -
JUN 24, 2015 -
JUN 5, 2015 Duke Research Blog -
MAY 26, 2015 -
APR 1, 2015 The Guardian
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Awards & Honors
- Expertise
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Global Scholarship
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Research
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- Research
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Selected Grants
- Training Program in Developmental and Stem Cell Biology awarded by National Institutes of Health 2001 - 2022
- Basic predoctoral training in neuroscience awarded by National Institutes of Health 1992 - 2018
- Center for Molecular & Cellular Studies of Ped Disease awarded by National Institutes of Health 2003 - 2018
- HARDAC+:Reproducible HPC for next-generation genomics awarded by North Carolina Biotechnology Center 2016 - 2017
- Training in Fundamental &Translational Neuroscience awarded by National Institutes of Health 2005 - 2016
- Illumina Hi-Seq 2000 Sequencing System awarded by National Institutes of Health 2012 - 2013
- Impact of early nutrition on neural mechanisms of signal processing awarded by National Institutes of Health 2010 - 2013
- CRCNS: Neural Flow Networks in Songbirds awarded by National Institutes of Health 2005 - 2012
- NIH Director's Pioneer Award awarded by National Institutes of Health 2005 - 2011
- Quantitative and Qualitative Differential Expression Proteomics awarded by National Institutes of Health 2010 - 2011
- Molecular Mechanisms of Basal Ganglia Regeneration in Songbirds awarded by National Institutes of Health 2006 - 2011
- Sensory- and motor-driven genes in vocal communication awarded by National Institutes of Health 2005 - 2011
- Auditory Protein Regulation in Normal & Abnormal States awarded by National Institutes of Health 2006 - 2009
- Functional analysis of ZENK gene expression by vector based RNAi knockdown awarded by National Science Foundation 2006 - 2009
- The Basal Ganglia System in Vocal Communication awarded by National Institutes of Health 2002 - 2005
- Alan T. Waterman Award awarded by National Science Foundation 2002 - 2005
- Avian brain nomenclature forum awarded by National Science Foundation 2002 - 2003
- Multiple disciplinary collaborative research: Evolution of brain structures for vocal learning in birds awarded by National Science Foundation 2000 - 2003
- Avian brain nomenclature forum awarded by National Institutes of Health 2001 - 2002
- Publications & Artistic Works
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Selected Publications
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Book Sections
- Wada, K, Chen, CC, and Jarvis, ED. "Detecting neural activity-dependent immediate early gene expression in the brain." In Methods in Neuroethological Research, 133-149. January 1, 2013. Full Text
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Conference Papers
- Burmeister, SS, Jarvis, ED, and Fernald, RD. "Rapid response of the preoptic area to social opportunity." December 2003. Link to Item
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Datasets
- Jarvis, ED, Mirarah, S, Aberer, A, Houde, P, Li, C, Ho, S, Faircloth, BC, Nabholz, B, Howard, JT, Suh, A, Weber, CC, Fonseca, RR, Alfaro-Nunez, A, Narula, N, Liu, L, Burt, D, Ellegren, H, Edwards, SV, Stamatakis, A, Mindell, DP, Caracraft, J, Braun, EL, Warnow, T, Jun, W, Gilbert, MTP, and Zhang, G. "Phylogenomic analyses data of the avian phylogenomics project." (2014). Full Text Link to Item
- Zhang, G, Li, B, Li, C, Gilbert, MTP, Jarvis, ED, Wang, J, Wang, J, and Avian Genome Consortium, . "Comparative genomic data of the Avian Phylogenomics Project." (January 2014). Full Text
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Journal Articles
- Audet, J-N, Kayello, L, Ducatez, S, Perillo, S, Cauchard, L, Howard, JT, O'Connell, LA, Jarvis, ED, and Lefebvre, L. "Divergence in problem-solving skills is associated with differential expression of glutamate receptors in wild finches." Science advances 4, no. 3 (March 14, 2018): eaao6369-. Full Text
- Lei, H, Yan, Z, Sun, X, Zhang, Y, Wang, J, Ma, C, Xu, Q, Wang, R, Jarvis, ED, and Sun, Z. "Axon guidance pathways served as common targets for human speech/language evolution and related disorders." Brain and language 174 (November 2017): 1-8. Full Text
- Korlach, J, Gedman, G, Kingan, SB, Chin, C-S, Howard, JT, Audet, J-N, Cantin, L, and Jarvis, ED. "De novo PacBio long-read and phased avian genome assemblies correct and add to reference genes generated with intermediate and short reads." GigaScience 6, no. 10 (October 1, 2017): 1-16. Full Text
- Theofanopoulou, C, Boeckx, C, and Jarvis, ED. "A hypothesis on a role of oxytocin in the social mechanisms of speech and vocal learning." Proceedings. Biological sciences 284, no. 1861 (August 2017). (Review) Full Text
- Chabout, J, Jones-Macopson, J, and Jarvis, ED. "Eliciting and Analyzing Male Mouse Ultrasonic Vocalization (USV) Songs." Journal of visualized experiments : JoVE , no. 123 (May 9, 2017). Full Text
- Chakraborty, M, Chen, L-F, Fridel, EE, Klein, ME, Senft, RA, Sarkar, A, and Jarvis, ED. "Overexpression of human NR2B receptor subunit in LMAN causes stuttering and song sequence changes in adult zebra finches." Scientific reports 7, no. 1 (April 21, 2017): 942-. Full Text
- Farré, M, Narayan, J, Slavov, GT, Damas, J, Auvil, L, Li, C, Jarvis, ED, Burt, DW, Griffin, DK, and Larkin, DM. "Novel Insights into Chromosome Evolution in Birds, Archosaurs, and Reptiles." Genome Biology and Evolution 8, no. 8 (August 2016): 2442-2451. Full Text
- Machado, JP, Johnson, WE, Gilbert, MTP, Zhang, G, Jarvis, ED, O'Brien, SJ, and Antunes, A. "Bone-associated gene evolution and the origin of flight in birds." BMC genomics 17 (May 18, 2016): 371-. Full Text
- Almeida, D, Maldonado, E, Khan, I, Silva, L, Gilbert, MTP, Zhang, G, Jarvis, ED, O'Brien, SJ, Johnson, WE, and Antunes, A. "Whole-Genome Identification, Phylogeny, and Evolution of the Cytochrome P450 Family 2 (CYP2) Subfamilies in Birds." Genome biology and evolution 8, no. 4 (April 2016): 1115-1131. Full Text
- Chabout, J, Sarkar, A, Patel, SR, Radden, T, Dunson, DB, Fisher, SE, and Jarvis, ED. "A Foxp2 Mutation Implicated in Human Speech Deficits Alters Sequencing of Ultrasonic Vocalizations in Adult Male Mice." Frontiers in Behavioral Neuroscience 10 (January 2016): 197-. Full Text Open Access Copy
- Jarvis, ED. "Perspectives from the Avian Phylogenomics Project: Questions that Can Be Answered with Sequencing All Genomes of a Vertebrate Class." Annual review of animal biosciences 4 (January 2016): 45-59. (Review) Full Text
- Chakraborty, M, and Jarvis, ED. "Brain evolution by brain pathway duplication." Philosophical transactions of the Royal Society of London. Series B, Biological sciences 370, no. 1684 (December 2015). (Review) Full Text Open Access Copy
- Jarvis, ED. "Surviving as an underrepresented minority scientist in a majority environment." Molecular biology of the cell 26, no. 21 (November 2015): 3692-3696. Full Text Open Access Copy
- Khan, I, Yang, Z, Maldonado, E, Li, C, Zhang, G, Gilbert, MTP, Jarvis, ED, O'Brien, SJ, Johnson, WE, and Antunes, A. "Olfactory Receptor Subgenomes Linked with Broad Ecological Adaptations in Sauropsida." Molecular biology and evolution 32, no. 11 (November 2015): 2832-2843. Full Text Open Access Copy
- Borges, R, Khan, I, Johnson, WE, Gilbert, MTP, Zhang, G, Jarvis, ED, O'Brien, SJ, and Antunes, A. "Gene loss, adaptive evolution and the co-evolution of plumage coloration genes with opsins in birds." BMC genomics 16 (October 6, 2015): 751-. Full Text Open Access Copy
- Brusatte, SL, O'Connor, JK, and Jarvis, ED. "The Origin and Diversification of Birds." Current biology : CB 25, no. 19 (October 2015): R888-R898. (Review) Full Text Open Access Copy
- Arriaga, G, Macopson, JJ, and Jarvis, ED. "Transsynaptic Tracing from Peripheral Targets with Pseudorabies Virus Followed by Cholera Toxin and Biotinylated Dextran Amines Double Labeling." Journal of visualized experiments : JoVE , no. 103 (September 14, 2015). Full Text Open Access Copy
- Cracraft, J, Houde, P, Ho, SYW, Mindell, DP, Fjeldså, J, Lindow, B, Edwards, SV, Rahbek, C, Mirarab, S, Warnow, T, Gilbert, MTP, Zhang, G, Braun, EL, and Jarvis, ED. "Response to Comment on "Whole-genome analyses resolve early branches in the tree of life of modern birds"." Science (New York, N.Y.) 349, no. 6255 (September 2015): 1460-. Full Text Open Access Copy
- Chabout, J, Sarkar, A, Dunson, DB, and Jarvis, ED. "Male mice song syntax depends on social contexts and influences female preferences." FRONTIERS IN BEHAVIORAL NEUROSCIENCE 9 (April 1, 2015). Full Text Open Access Copy Link to Item
- Wang, R, Chen, C-C, Hara, E, Rivas, MV, Roulhac, PL, Howard, JT, Chakraborty, M, Audet, J-N, and Jarvis, ED. "Convergent differential regulation of SLIT-ROBO axon guidance genes in the brains of vocal learners." The Journal of comparative neurology 523, no. 6 (April 2015): 892-906. Full Text Open Access Copy
- Eöry, L, Gilbert, MTP, Li, C, Li, B, Archibald, A, Aken, BL, Zhang, G, Jarvis, E, Flicek, P, and Burt, DW. "Avianbase: a community resource for bird genomics." Genome biology 16 (January 29, 2015): 21-. (Letter) Full Text Open Access Copy
- Chabout, J, Sarkar, A, Dunson, DB, and Jarvis, ED. "Male mice song syntax depends on social contexts and influences female preferences." Frontiers in behavioral neuroscience 9 (January 2015): 76-. Full Text Open Access Copy
- Chakraborty, M, Walløe, S, Nedergaard, S, Fridel, EE, Dabelsteen, T, Pakkenberg, B, Bertelsen, MF, Dorrestein, GM, Brauth, SE, Durand, SE, and Jarvis, ED. "Core and Shell Song Systems Unique to the Parrot Brain." PloS one 10, no. 6 (January 2015): e0118496-. Full Text Open Access Copy
- Haug-Baltzell, A, Jarvis, ED, McCarthy, FM, and Lyons, E. "Identification of dopamine receptors across the extant avian family tree and analysis with other clades uncovers a polyploid expansion among vertebrates." Frontiers in neuroscience 9 (January 2015): 361-. Full Text Open Access Copy
- Jarvis, ED, Mirarab, S, Aberer, AJ, Li, B, Houde, P, Li, C, Ho, SYW, Faircloth, BC, Nabholz, B, Howard, JT, Suh, A, Weber, CC, da Fonseca, RR, Alfaro-Núñez, A, Narula, N, Liu, L, Burt, D, Ellegren, H, Edwards, SV, Stamatakis, A, Mindell, DP, Cracraft, J, Braun, EL, Warnow, T, Jun, W, Gilbert, MTP, Zhang, G, and Avian Phylogenomics Consortium, . "Phylogenomic analyses data of the avian phylogenomics project." GigaScience 4 (January 2015): 4-. Full Text Open Access Copy
- Jarvis, ED. "Listening in." eLife 4 (January 2015): e11665-. Full Text Open Access Copy
- Ribeiro, ÂM, Zepeda-Mendoza, ML, Bertelsen, MF, Kristensen, AT, Jarvis, ED, Gilbert, MTP, and da Fonseca, RR. "A refined model of the genomic basis for phenotypic variation in vertebrate hemostasis." BMC evolutionary biology 15 (January 2015): 124-. Full Text Open Access Copy
- Wirthlin, M, Lovell, PV, Jarvis, ED, and Mello, CV. "Comparative genomics reveals molecular features unique to the songbird lineage." BMC genomics 15 (December 13, 2014): 1082-. Full Text Open Access Copy
- Greenwold, MJ, Bao, W, Jarvis, ED, Hu, H, Li, C, Gilbert, MTP, Zhang, G, and Sawyer, RH. "Dynamic evolution of the alpha (α) and beta (β) keratins has accompanied integument diversification and the adaptation of birds into novel lifestyles." BMC evolutionary biology 14 (December 12, 2014): 249-. Full Text Open Access Copy
- Green, RE, Braun, EL, Armstrong, J, Earl, D, Nguyen, N, Hickey, G, Vandewege, MW, St John, JA, Capella-Gutiérrez, S, Castoe, TA, Kern, C, Fujita, MK, Opazo, JC, Jurka, J, Kojima, KK, Caballero, J, Hubley, RM, Smit, AF, Platt, RN, Lavoie, CA, Ramakodi, MP, Finger, JW, Suh, A, Isberg, SR, Miles, L, Chong, AY, Jaratlerdsiri, W, Gongora, J, Moran, C, Iriarte, A, McCormack, J, Burgess, SC, Edwards, SV, Lyons, E, Williams, C, Breen, M, Howard, JT, Gresham, CR, Peterson, DG, Schmitz, J, and Pollock, DD et al. "Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs." Science (New York, N.Y.) 346, no. 6215 (December 11, 2014): 1254449-. Full Text Open Access Copy
- Meredith, RW, Zhang, G, Gilbert, MTP, Jarvis, ED, and Springer, MS. "Evidence for a single loss of mineralized teeth in the common avian ancestor." Science (New York, N.Y.) 346, no. 6215 (December 11, 2014): 1254390-. Full Text Open Access Copy
- Romanov, MN, Farré, M, Lithgow, PE, Fowler, KE, Skinner, BM, O'Connor, R, Fonseka, G, Backström, N, Matsuda, Y, Nishida, C, Houde, P, Jarvis, ED, Ellegren, H, Burt, DW, Larkin, DM, and Griffin, DK. "Reconstruction of gross avian genome structure, organization and evolution suggests that the chicken lineage most closely resembles the dinosaur avian ancestor." BMC genomics 15 (December 11, 2014): 1060-. Full Text Open Access Copy
- Zhang, G, Li, C, Li, Q, Li, B, Larkin, DM, Lee, C, Storz, JF, Antunes, A, Greenwold, MJ, Meredith, RW, Ödeen, A, Cui, J, Zhou, Q, Xu, L, Pan, H, Wang, Z, Jin, L, Zhang, P, Hu, H, Yang, W, Hu, J, Xiao, J, Yang, Z, Liu, Y, Xie, Q, Yu, H, Lian, J, Wen, P, Zhang, F, Li, H, Zeng, Y, Xiong, Z, Liu, S, Zhou, L, Huang, Z, An, N, Wang, J, Zheng, Q, Xiong, Y, Wang, G, Wang, B, Wang, J, Fan, Y, da Fonseca, RR, Alfaro-Núñez, A, Schubert, M, Orlando, L, Mourier, T, Howard, JT, Ganapathy, G, and Pfenning, A et al. "Comparative genomics reveals insights into avian genome evolution and adaptation." Science (New York, N.Y.) 346, no. 6215 (December 11, 2014): 1311-1320. Full Text Open Access Copy
- Zhou, Q, Zhang, J, Bachtrog, D, An, N, Huang, Q, Jarvis, ED, Gilbert, MTP, and Zhang, G. "Complex evolutionary trajectories of sex chromosomes across bird taxa." Science (New York, N.Y.) 346, no. 6215 (December 11, 2014): 1246338-. Full Text Open Access Copy
- Jarvis, ED, Mirarab, S, Aberer, AJ, Li, B, Houde, P, Li, C, Ho, SYW, Faircloth, BC, Nabholz, B, Howard, JT, Suh, A, Weber, CC, da Fonseca, RR, Li, J, Zhang, F, Li, H, Zhou, L, Narula, N, Liu, L, Ganapathy, G, Boussau, B, Bayzid, MS, Zavidovych, V, Subramanian, S, Gabaldón, T, Capella-Gutiérrez, S, Huerta-Cepas, J, Rekepalli, B, Munch, K, Schierup, M, Lindow, B, Warren, WC, Ray, D, Green, RE, Bruford, MW, Zhan, X, Dixon, A, Li, S, Li, N, Huang, Y, Derryberry, EP, Bertelsen, MF, and Sheldon, FH et al. "Whole-genome analyses resolve early branches in the tree of life of modern birds." Science (New York, N.Y.) 346, no. 6215 (December 2014): 1320-1331. Full Text Open Access Copy
- Petkov, CI, and Jarvis, ED. "The basal ganglia within a cognitive system in birds and mammals." The Behavioral and brain sciences 37, no. 6 (December 2014): 568-569. Full Text
- Pfenning, AR, Hara, E, Whitney, O, Rivas, MV, Wang, R, Roulhac, PL, Howard, JT, Wirthlin, M, Lovell, PV, Ganapathy, G, Mouncastle, J, Moseley, MA, Thompson, JW, Soderblom, EJ, Iriki, A, Kato, M, Gilbert, MTP, Zhang, G, Bakken, T, Bongaarts, A, Bernard, A, Lein, E, Mello, CV, Hartemink, AJ, and Jarvis, ED. "Convergent transcriptional specializations in the brains of humans and song-learning birds." Science (New York, N.Y.) 346, no. 6215 (December 2014): 1256846-. Full Text Open Access Copy
- Whitney, O, Pfenning, AR, Howard, JT, Blatti, CA, Liu, F, Ward, JM, Wang, R, Audet, J-N, Kellis, M, Mukherjee, S, Sinha, S, Hartemink, AJ, West, AE, and Jarvis, ED. "Core and region-enriched networks of behaviorally regulated genes and the singing genome." Science (New York, N.Y.) 346, no. 6215 (December 2014): 1256780-. Full Text Open Access Copy
- Zhang, G, Jarvis, ED, and Gilbert, MTP. "Avian genomes. A flock of genomes. Introduction." Science (New York, N.Y.) 346, no. 6215 (December 2014): 1308-1309. Full Text Open Access Copy
- Kubikova, L, Bosikova, E, Cvikova, M, Lukacova, K, Scharff, C, and Jarvis, ED. "Basal ganglia function, stuttering, sequencing, and repair in adult songbirds." Scientific reports 4 (October 13, 2014): 6590-. Full Text Open Access Copy
- Striedter, GF, Belgard, TG, Chen, C-C, Davis, FP, Finlay, BL, Güntürkün, O, Hale, ME, Harris, JA, Hecht, EE, Hof, PR, Hofmann, HA, Holland, LZ, Iwaniuk, AN, Jarvis, ED, Karten, HJ, Katz, PS, Kristan, WB, Macagno, ER, Mitra, PP, Moroz, LL, Preuss, TM, Ragsdale, CW, Sherwood, CC, Stevens, CF, Stüttgen, MC, Tsumoto, T, and Wilczynski, W. "NSF workshop report: discovering general principles of nervous system organization by comparing brain maps across species." The Journal of comparative neurology 522, no. 7 (May 2014): 1445-1453. Full Text Open Access Copy
- Callicrate, T, Dikow, R, Thomas, JW, Mullikin, JC, Jarvis, ED, Fleischer, RC, and NISC Comparative Sequencing Program, . "Genomic resources for the endangered Hawaiian honeycreepers." BMC genomics 15 (January 2014): 1098-. Full Text Open Access Copy
- Cui, J, Zhao, W, Huang, Z, Jarvis, ED, Gilbert, MTP, Walker, PJ, Holmes, EC, and Zhang, G. "Low frequency of paleoviral infiltration across the avian phylogeny." Genome biology 15, no. 12 (January 2014): 539-. Full Text Open Access Copy
- Dai, R, Rossello, R, Chen, C-C, Kessler, J, Davison, I, Hochgeschwender, U, and Jarvis, ED. "Maintenance and neuronal differentiation of chicken induced pluripotent stem-like cells." Stem cells international 2014 (January 2014): 182737-. Full Text Open Access Copy
- Ganapathy, G, Howard, JT, Ward, JM, Li, J, Li, B, Li, Y, Xiong, Y, Zhang, Y, Zhou, S, Schwartz, DC, Schatz, M, Aboukhalil, R, Fedrigo, O, Bukovnik, L, Wang, T, Wray, G, Rasolonjatovo, I, Winer, R, Knight, JR, Koren, S, Warren, WC, Zhang, G, Phillippy, AM, and Jarvis, ED. "High-coverage sequencing and annotated assemblies of the budgerigar genome." GigaScience 3 (January 2014): 11-. Full Text Open Access Copy
- Li, C, Zhang, Y, Li, J, Kong, L, Hu, H, Pan, H, Xu, L, Deng, Y, Li, Q, Jin, L, Yu, H, Chen, Y, Liu, B, Yang, L, Liu, S, Zhang, Y, Lang, Y, Xia, J, He, W, Shi, Q, Subramanian, S, Millar, CD, Meader, S, Rands, CM, Fujita, MK, Greenwold, MJ, Castoe, TA, Pollock, DD, Gu, W, Nam, K, Ellegren, H, Ho, SY, Burt, DW, Ponting, CP, Jarvis, ED, Gilbert, MTP, Yang, H, Wang, J, Lambert, DM, Wang, J, and Zhang, G. "Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment." GigaScience 3, no. 1 (January 2014): 27-. Full Text Open Access Copy
- Li, S, Li, B, Cheng, C, Xiong, Z, Liu, Q, Lai, J, Carey, HV, Zhang, Q, Zheng, H, Wei, S, Zhang, H, Chang, L, Liu, S, Zhang, S, Yu, B, Zeng, X, Hou, Y, Nie, W, Guo, Y, Chen, T, Han, J, Wang, J, Wang, J, Chen, C, Liu, J, Stambrook, PJ, Xu, M, Zhang, G, Gilbert, MTP, Yang, H, Jarvis, ED, Yu, J, and Yan, J. "Genomic signatures of near-extinction and rebirth of the crested ibis and other endangered bird species." Genome biology 15, no. 12 (January 2014): 557-. Full Text Open Access Copy
- Pereira, J, Johnson, WE, O'Brien, SJ, Jarvis, ED, Zhang, G, Gilbert, MTP, Vasconcelos, V, and Antunes, A. "Evolutionary genomics and adaptive evolution of the Hedgehog gene family (Shh, Ihh and Dhh) in vertebrates." PloS one 9, no. 12 (January 2014): e74132-. Full Text Open Access Copy
- Striedter, GF, Belgard, TG, Chen, C-C, Davis, FP, Finlay, BL, Güntürkün, O, Hale, ME, Harris, JA, Hecht, EE, Hof, PR, Hofmann, HA, Holland, LZ, Iwaniuk, AN, Jarvis, ED, Karten, HJ, Katz, PS, Kristan, WB, Macagno, ER, Mitra, PP, Moroz, LL, Preuss, TM, Ragsdale, CW, Sherwood, CC, Stevens, CF, Stüttgen, MC, Tsumoto, T, and Wilczynski, W. "NSF workshop report: discovering general principles of nervous system organization by comparing brain maps across species." Brain, behavior and evolution 83, no. 1 (January 2014): 1-8. Full Text Open Access Copy
- Weber, CC, Boussau, B, Romiguier, J, Jarvis, ED, and Ellegren, H. "Evidence for GC-biased gene conversion as a driver of between-lineage differences in avian base composition." Genome biology 15, no. 12 (January 2014): 549-. Full Text Open Access Copy
- Chen, C-C, Winkler, CM, Pfenning, AR, and Jarvis, ED. "Molecular profiling of the developing avian telencephalon: regional timing and brain subdivision continuities." J Comp Neurol 521, no. 16 (November 2013): 3666-3701. Full Text Open Access Copy Link to Item
- Jarvis, ED, Yu, J, Rivas, MV, Horita, H, Feenders, G, Whitney, O, Jarvis, SC, Jarvis, ER, Kubikova, L, Puck, AE, Siang-Bakshi, C, Martin, S, McElroy, M, Hara, E, Howard, J, Pfenning, A, Mouritsen, H, Chen, CC, and Wada, K. "Global view of the functional molecular organization of the avian cerebrum: mirror images and functional columns." J Comp Neurol 521, no. 16 (November 2013): Spc1-. Full Text Link to Item
- Jarvis, ED, Yu, J, Rivas, MV, Horita, H, Feenders, G, Whitney, O, Jarvis, SC, Jarvis, ER, Kubikova, L, Puck, AEP, Siang-Bakshi, C, Martin, S, McElroy, M, Hara, E, Howard, J, Pfenning, A, Mouritsen, H, Chen, C-C, and Wada, K. "Global view of the functional molecular organization of the avian cerebrum: mirror images and functional columns." J Comp Neurol 521, no. 16 (November 2013): 3614-3665. Full Text Open Access Copy Link to Item
- Smulders, TV, and Jarvis, ED. "Different mechanisms are responsible for dishabituation of electrophysiological auditory responses to a change in acoustic identity than to a change in stimulus location." Neurobiol Learn Mem 106 (November 2013): 163-176. Full Text Open Access Copy Link to Item
- Rosselló, RA, Chen, C-C, Dai, R, Howard, JT, Hochgeschwender, U, and Jarvis, ED. "Mammalian genes induce partially reprogrammed pluripotent stem cells in non-mammalian vertebrate and invertebrate species. (Published online)" Elife 2 (September 3, 2013): e00036-. Full Text Open Access Copy Link to Item
- Bradnam, KR, Fass, JN, Alexandrov, A, Baranay, P, Bechner, M, Birol, I, Boisvert, S, Chapman, JA, Chapuis, G, Chikhi, R, Chitsaz, H, Chou, W-C, Corbeil, J, Del Fabbro, C, Docking, TR, Durbin, R, Earl, D, Emrich, S, Fedotov, P, Fonseca, NA, Ganapathy, G, Gibbs, RA, Gnerre, S, Godzaridis, E, Goldstein, S, Haimel, M, Hall, G, Haussler, D, Hiatt, JB, Ho, IY, Howard, J, Hunt, M, Jackman, SD, Jaffe, DB, Jarvis, ED, Jiang, H, Kazakov, S, Kersey, PJ, Kitzman, JO, Knight, JR, Koren, S, and Lam, T-W et al. "Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species." GigaScience 2, no. 1 (July 22, 2013): 10-. Full Text Open Access Copy
- Arriaga, G, and Jarvis, ED. "Mouse vocal communication system: are ultrasounds learned or innate?." Brain Lang 124, no. 1 (January 2013): 96-116. (Review) Full Text Open Access Copy Link to Item
- Liu, W-C, Wada, K, Jarvis, ED, and Nottebohm, F. "Rudimentary substrates for vocal learning in a suboscine." Nature Communications 4 (2013). Full Text Open Access Copy
- Parchman, TL, Gompert, Z, Braun, MJ, Brumfield, RT, McDonald, DB, Uy, JAC, Zhang, G, Jarvis, ED, Schlinger, BA, and Buerkle, CA. "The genomic consequences of adaptive divergence and reproductive isolation between species of manakins." Molecular Ecology 22, no. 12 (2013): 3304-3317. Full Text
- Parchman, TL, Gompert, Z, Braun, MJ, Brumfield, RT, Mcdonald, DB, Uy, JAC, Jarvis, ED, Schlinger, BA, and Buerkle, CA. "The genomic consequences of adaptive divergence and reproductive isolation between species of manakins." Molecular Ecology (2013). Full Text Open Access Copy
- Chen, C-C, Wada, K, and Jarvis, ED. "Radioactive in situ hybridization for detecting diverse gene expression patterns in tissue. (Published online)" J Vis Exp , no. 62 (April 27, 2012). Full Text Open Access Copy Link to Item
- Arriaga, G, Zhou, EP, and Jarvis, ED. "Of mice, birds, and men: the mouse ultrasonic song system has some features similar to humans and song-learning birds." PLoS One 7, no. 10 (2012): e46610-. Full Text Open Access Copy Link to Item
- Chen, C-C, Balaban, E, and Jarvis, ED. "Interspecies avian brain chimeras reveal that large brain size differences are influenced by cell-interdependent processes." PLoS One 7, no. 7 (2012): e42477-. Full Text Open Access Copy Link to Item
- Chen, C-C, Wada, K, and Jarvis, ED. "Radioactive in situ hybridization for detecting diverse gene expression patterns in tissue." Journal of visualized experiments : JoVE , no. 62 (2012). Full Text
- Hara, E, Rivas, MV, Ward, JM, Okanoya, K, and Jarvis, ED. "Convergent differential regulation of parvalbumin in the brains of vocal learners." PLoS One 7, no. 1 (2012): e29457-. Full Text Open Access Copy Link to Item
- Horita, H, Kobayashi, M, Liu, W-C, Oka, K, Jarvis, ED, and Wada, K. "Specialized motor-driven dusp1 expression in the song systems of multiple lineages of vocal learning birds." PLoS One 7, no. 8 (2012): e42173-. Full Text Open Access Copy Link to Item
- Koren, S, Schatz, MC, Walenz, BP, Martin, J, Howard, JT, Ganapathy, G, Wang, Z, Rasko, DA, McCombie, WR, Jarvis, ED, and Phillippy, AM. "Hybrid error correction and de novo assembly of single-molecule sequencing reads." Nature Biotechnology 30, no. 7 (2012): 693-700. Full Text Open Access Copy
- Petkov, CI, and Jarvis, ED. "Birds, primates, and spoken language origins: Behavioral phenotypes and neurobiological substrates." Frontiers in Evolutionary Neuroscience 4, no. AUG (2012). Full Text Open Access Copy
- Simonyan, K, Horwitz, B, and Jarvis, ED. "Dopamine regulation of human speech and bird song: A critical review." Brain and Language 122, no. 3 (2012): 142-150. Full Text Open Access Copy
- St John, JA, Braun, EL, Isberg, SR, Miles, LG, Chong, AY, Gongora, J, Dalzell, P, Moran, C, Bed'Hom, B, Abzhanov, A, Burgess, SC, Cooksey, AM, Castoe, TA, Crawford, NG, Densmore, LD, Drew, JC, Edwards, SV, Faircloth, BC, Fujita, MK, Greenwold, MJ, Hoffmann, FG, Howard, JM, Iguchi, T, Janes, DE, Khan, SY, Kohno, S, de Koning, APJ, Lance, SL, McCarthy, FM, McCormack, JE, Merchant, ME, Peterson, DG, Pollock, DD, Pourmand, N, Raney, BJ, Roessler, KA, Sanford, JR, Sawyer, RH, and Schmidt, CJ et al. "Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes." GENOME BIOLOGY 13, no. 1 (2012). Full Text Open Access Copy Link to Item
- Roulhac, PL, Ward, JM, Thompson, JW, Soderblom, EJ, Silva, M, Moseley, MA, and Jarvis, ED. "Microproteomics: quantitative proteomic profiling of small numbers of laser-captured cells. (Published online)" Cold Spring Harb Protoc 2011, no. 2 (February 1, 2011): pdb.prot5573-. Open Access Copy Link to Item
- KÜnstner, A, Wolf, JBW, BackstrÖm, N, Whitney, O, Balakrishnan, CN, Day, L, Edwards, SV, Janes, DE, Schlinger, BA, Wilson, RK, Jarvis, ED, Warren, WC, and Ellegren, H. "Comparative genomics based on massive paralle transcriptome sequencing reveals patterns of substitution and selection across 10 bird species (Molecular Ecology (2010) 19:SUPPL.1 (266-276))." Molecular Ecology 20, no. 13 (2011): 2871--. Full Text
- Nabholz, B, Künstner, A, Wang, R, Jarvis, ED, and Ellegren, H. "Dynamic evolution of base composition: Causes and consequences in avian phylogenomics." Molecular Biology and Evolution 28, no. 8 (2011): 2197-2210. Full Text Open Access Copy
- Roulhac, PL, Ward, JM, Thompson, JW, Soderblom, EJ, Silva, M, III, MAM, and Jarvis, ED. "Microproteomics: Quantitative proteomic profiling of small numbers of laser-captured cells." Cold Spring Harbor Protocols 6, no. 2 (2011). Full Text Open Access Copy
- Jarvis, ED. "The evolution of vocal learning systems in birds and humans." 2 (December 1, 2010): 213-227. (Chapter) Full Text
- Robinson, GE, Banks, JA, Padilla, DK, Burggren, WW, Cohen, CS, Delwiche, CF, Funk, V, Hoekstra, HE, Jarvis, ED, Johnson, L, Martindale, MQ, del Rio, CM, Medina, M, Salt, DE, Sinha, S, Specht, C, Strange, K, Strassmann, JE, Swalla, BJ, and Tomanek, L. "Empowering 21st Century Biology." BioScience 60, no. 11 (December 2010): 923-930. Full Text Open Access Copy
- Horita, H, Wada, K, Rivas, MV, Hara, E, and Jarvis, ED. "The dusp1 immediate early gene is regulated by natural stimuli predominantly in sensory input neurons." J Comp Neurol 518, no. 14 (July 15, 2010): 2873-2901. Full Text Open Access Copy Link to Item
- Kubikova, L, Wada, K, and Jarvis, ED. "Dopamine receptors in a songbird brain." J Comp Neurol 518, no. 6 (March 15, 2010): 741-769. Full Text Open Access Copy Link to Item
- Jarvis, ED. "Bird song systems: Evolution." Encyclopedia of Neuroscience (2010): 217-225. Full Text Open Access Copy
- Jarvis, ED. "Bird Brain: Evolution." Encyclopedia of Neuroscience (2010): 209-215. Full Text Open Access Copy
- Künstner, A, Wolf, JBW, Backström, N, Whitney, O, Balakrishnan, CN, Day, L, Edwards, SV, Janes, DE, Schlinger, BA, Wilson, RK, Jarvis, ED, Warren, WC, and Ellegren, H. "Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species." Molecular Ecology 19, no. SUPPL. 1 (2010): 266-276. Full Text Open Access Copy
- Nabholz, B, Jarvis, ED, and Ellegren, H. "Obtaining mtDNA genomes from next-generation transcriptome sequencing: A case study on the basal Passerida (Aves: Passeriformes) phylogeny." Molecular Phylogenetics and Evolution 57, no. 1 (2010): 466-470. Full Text Open Access Copy
- Warren, WC, Clayton, DF, Ellegren, H, Arnold, AP, Hillier, LW, Künstner, A, Searle, S, White, S, Vilella, AJ, Fairley, S, Heger, A, Kong, L, Ponting, CP, Jarvis, ED, Mello, CV, Minx, P, Lovell, P, Velho, TAF, Ferris, M, Balakrishnan, CN, Sinha, S, Blatti, C, London, SE, Li, Y, Lin, Y-C, George, J, Sweedler, J, Southey, B, Gunaratne, P, Watson, M, Nam, K, Backström, N, Smeds, L, Nabholz, B, Itoh, Y, Whitney, O, Pfenning, AR, Howard, J, Völker, M, Skinner, BM, Griffin, DK, Ye, L, and McLaren, WM et al. "The genome of a songbird." Nature 464, no. 7289 (2010): 757-762. Full Text Open Access Copy
- Zapka, M, Heyers, D, Liedvogel, M, Jarvis, ED, and Mouritsen, H. "Night-time neuronal activation of Cluster N in a day- and night-migrating songbird." European Journal of Neuroscience 32, no. 4 (2010): 619-624. Full Text Open Access Copy
- Hara, E, Kubikova, L, Hessler, NA, and Jarvis, ED. "Assessing visual requirements for social context-dependent activation of the songbird song system." Proc Biol Sci 276, no. 1655 (January 22, 2009): 279-289. Full Text Open Access Copy Link to Item
- Horita, H, Wada, K, and Jarvis, ED. "Early onset of deafening-induced song deterioration and differential requirements of the pallial-basal ganglia vocal pathway." Eur J Neurosci 28, no. 12 (December 2008): 2519-2532. Full Text Open Access Copy Link to Item
- Feenders, G, Liedvogel, M, Rivas, M, Zapka, M, Horita, H, Hara, E, Wada, K, Mouritsen, H, and Jarvis, ED. "Molecular mapping of movement-associated areas in the avian brain: A motor theory for vocal learning origin." PLoS ONE 3, no. 3 (2008). Full Text Open Access Copy
- Pinaud, R, Osorio, C, Alzate, O, and Jarvis, ED. "Profiling of experience-regulated proteins in the songbird auditory forebrain using quantitative proteomics." European Journal of Neuroscience 27, no. 6 (2008): 1409-1422. Full Text Open Access Copy
- Jarvis, ED. "Neural systems for vocal learning in birds and humans: a synopsis." J Ornithol 148, no. 1 (December 1, 2007): 35-44. Full Text Open Access Copy Link to Item
- Kubikova, L, Turner, EA, and Jarvis, ED. "The pallial basal ganglia pathway modulates the behaviorally driven gene expression of the motor pathway." Eur J Neurosci 25, no. 7 (April 2007): 2145-2160. Full Text Open Access Copy Link to Item
- Hara, E, Kubikova, L, Hessler, NA, and Jarvis, ED. "Role of the midbrain dopaminergic system in modulation of vocal brain activation by social context." European Journal of Neuroscience 25, no. 11 (2007): 3406-3416. Full Text Open Access Copy
- Liedvogel, M, Feenders, G, Wada, K, Troje, NF, Jarvis, ED, and Mouritsen, H. "Lateralized activation of Cluster N in the brains of migratory songbirds." European Journal of Neuroscience 25, no. 4 (2007): 1166-1173. Full Text Open Access Copy
- Inoue, K, Kato, M, Okanoya, K, Sakaguchi, H, Wada, K, Jarvis, ED, and Tsutsui, K. "Sex-dependent expression of PEP-19 in the song nucleus during brain development in zebra finches." ZOOLOGICAL SCIENCE 23, no. 12 (December 2006): 1215-1215. Link to Item
- Smith, VA, Yu, J, Smulders, TV, Hartemink, AJ, and Jarvis, ED. "Computational inference of neural information flow networks." PLoS Comput Biol 2, no. 11 (November 24, 2006): e161-. Full Text Open Access Copy Link to Item
- Wada, K, Howard, JT, McConnell, P, Whitney, O, Lints, T, Rivas, MV, Horita, H, Patterson, MA, White, SA, Scharff, C, Haesler, S, Zhao, S, Sakaguchi, H, Hagiwara, M, Shiraki, T, Hirozane-Kishikawa, T, Skene, P, Hayashizaki, Y, Carninci, P, and Jarvis, ED. "A molecular neuroethological approach for identifying and characterizing a cascade of behaviorally regulated genes." Proc Natl Acad Sci U S A 103, no. 41 (October 10, 2006): 15212-15217. Full Text Open Access Copy Link to Item
- Ferreira, ARJ, Smulders, TV, Sameshima, K, Mello, CV, and Jarvis, ED. "VOCALIZATIONS AND ASSOCIATED BEHAVIORS OF THE SOMBRE HUMMINGBIRD (APHANTOCHROA CIRRHOCHLORIS) AND THE RUFOUS-BREASTED HERMIT (GLAUCIS HIRSUTUS)." Auk 123, no. 4 (October 2006): 1129-1148. Open Access Copy Link to Item
- Sasaki, A, Sotnikova, TD, Gainetdinov, RR, and Jarvis, ED. "Social context-dependent singing-regulated dopamine." J Neurosci 26, no. 35 (August 30, 2006): 9010-9014. Full Text Open Access Copy Link to Item
- JARVIS, ED. "Selection for and against vocal learning in birds and mammals." Ornithological Science 5, no. 1 (July 2006): 5-14. Full Text
- Wada, K, Howard, JT, McConnell, P, Whitney, O, Lints, T, Rivas, MV, Horita, H, Patterson, MA, White, SA, Scharff, C, Haesler, S, Zhao, S, Sakaguchi, H, Hagiwara, M, Shiraki, T, Hirozane-Kishikawa, T, Skene, P, Hayashizaki, Y, Carninci, P, and Jarvis, ED. "Erratum: A molecular neuroethological approach for identifying and characterizing a cascade of behaviorally regulated genes (Proceedings of the National Academy of Sciences of the United States of America (October 10, 2006) 41, 103 (15212-15217) DOI 10.1073/pnas.0607098103)." Proceedings of the National Academy of Sciences of the United States of America 103, no. 45 (2006): 17064--. Full Text
- Jarvis, ED, Güntürkün, O, Bruce, L, Csillag, A, Karten, H, Kuenzel, W, Medina, L, Paxinos, G, Perkel, DJ, Shimizu, T, Striedter, G, Wild, JM, Ball, GF, Dugas-Ford, J, Durand, SE, Hough, GE, Husband, S, Kubikova, L, Lee, DW, Mello, CV, Powers, A, Siang, C, Smulders, TV, Wada, K, White, SA, Yamamoto, K, Yu, J, Reiner, A, Butler, AB, and Avian Brain Nomenclature Consortium, . "Avian brains and a new understanding of vertebrate brain evolution." Nat Rev Neurosci 6, no. 2 (February 2005): 151-159. (Review) Full Text Open Access Copy Link to Item
- Burmeister, SS, Jarvis, ED, and Fernald, RD. "Rapid behavioral and genomic responses to social opportunity." PLoS biology. 3, no. 11 (2005): e363-. Full Text Open Access Copy
- Burmeister, SS, Jarvis, ED, and Fernald, RD. "Rapid behavioral and genomic responses to social opportunity." PLoS Biology 3, no. 11 (2005): 1996-2004. Full Text
- Mouritsen, H, Feenders, G, Liedvogel, M, Wada, K, and Jarvis, ED. "Night-vision brain area in migratory songbirds." Proceedings of the National Academy of Sciences of the United States of America 102, no. 23 (2005): 8339-8344. Full Text Open Access Copy
- Yu, J, Smith, VA, Wang, PP, Hartemink, AJ, and Jarvis, ED. "Advances to Bayesian network inference for generating causal networks from observational biological data." Bioinformatics 20, no. 18 (December 12, 2004): 3594-3603. Full Text Open Access Copy Link to Item
- Wada, K, Sakaguchi, H, Jarvis, ED, and Hagiwara, M. "Differential expression of glutamate receptors in avian neural pathways for learned vocalization." J Comp Neurol 476, no. 1 (August 9, 2004): 44-64. Full Text Open Access Copy Link to Item
- Jarvis, ED. "Learned birdsong and the neurobiology of human language." Ann N Y Acad Sci 1016 (June 2004): 749-777. (Review) Full Text Open Access Copy Link to Item
- Reiner, A, Perkel, DJ, Mello, CV, and Jarvis, ED. "Songbirds and the revised avian brain nomenclature." Ann N Y Acad Sci 1016 (June 2004): 77-108. (Review) Full Text Open Access Copy Link to Item
- Reiner, A, Perkel, DJ, Bruce, LL, Butler, AB, Csillag, A, Kuenzel, W, Medina, L, Paxinos, G, Shimizu, T, Striedter, G, Wild, M, Ball, GF, Durand, S, Güntürkün, O, Lee, DW, Mello, CV, Powers, A, White, SA, Hough, G, Kubikova, L, Smulders, TV, Wada, K, Dugas-Ford, J, Husband, S, Yamamoto, K, Yu, J, Siang, C, Jarvis, ED, and Avian Brain Nomenclature Forum, . "Revised nomenclature for avian telencephalon and some related brainstem nuclei." J Comp Neurol 473, no. 3 (May 31, 2004): 377-414. Full Text Open Access Copy Link to Item
- Haesler, S, Wada, K, Nshdejan, A, Morrisey, EE, Lints, T, Jarvis, ED, and Scharff, C. "FoxP2 expression in avian vocal learners and non-learners." J Neurosci 24, no. 13 (March 31, 2004): 3164-3175. Full Text Open Access Copy Link to Item
- Jarvis, ED. "Brains and birdsong." (January 1, 2004): 226-271. (Chapter) Full Text Open Access Copy
- Reiner, A, Perkel, DJ, Bruce, LL, Butler, AB, Csillag, A, Kuenzel, W, Medina, L, Paxinos, G, Shimizu, T, Striedter, G, Wild, M, Ball, GF, Durand, S, Güntürkün, O, Lee, DW, Mello, CV, Powers, A, White, SA, Hough, G, Kubikova, L, Smulders, TV, Wada, K, Dugas-Ford, J, Husband, S, Yamamoto, K, Yu, J, Siang, C, and Jarvis, ED. "Erratum: Revised nomenclature for avian telencephalon and some related brainstem nuclei (Journal of Comparative Neurology (2004) 473 (377-414))." Journal of Comparative Neurology 475, no. 2 (2004): 288--.
- Gustincich, S, Batalov, S, Beisel, KW, Bono, H, Carninci, P, Fletcher, CF, Grimmond, S, Hirokawa, N, Jarvis, ED, Jegla, T, Kawasawa, Y, LeMieux, J, Miki, H, Raviola, E, Teasdale, RD, Tominaga, N, Yagi, K, Zimmer, A, Hayashizaki, Y, Okazaki, Y, RIKEN GER Group, , and GSL Members, . "Analysis of the mouse transcriptome for genes involved in the function of the nervous system." Genome Res 13, no. 6B (June 2003): 1395-1401. Full Text Open Access Copy Link to Item
- Smith, VA, Jarvis, ED, and Hartemink, AJ. "Influence of network topology and data collection on network inference." Pac Symp Biocomput (2003): 164-175. Open Access Copy Link to Item
- Ribeiro, S, Mello, CV, Velho, T, Gardner, TJ, Jarvis, ED, and Pavlides, C. "Induction of hippocampal long-term potentiation during waking leads to increased extrahippocampal zif-268 expression during ensuing rapid-eye-movement sleep." J Neurosci 22, no. 24 (December 15, 2002): 10914-10923. Open Access Copy Link to Item
- Okazaki, Y, Furuno, M, Kasukawa, T, Adachi, J, Bono, H, Kondo, S, Nikaido, I, Osato, N, Saito, R, Suzuki, H, Yamanaka, I, Kiyosawa, H, Yagi, K, Tomaru, Y, Hasegawa, Y, Nogami, A, Schönbach, C, Gojobori, T, Baldarelli, R, Hill, DP, Bult, C, Hume, DA, Quackenbush, J, Schriml, LM, Kanapin, A, Matsuda, H, Batalov, S, Beisel, KW, Blake, JA, Bradt, D, Brusic, V, Chothia, C, Corbani, LE, Cousins, S, Dalla, E, Dragani, TA, Fletcher, CF, Forrest, A, Frazer, KS, Gaasterland, T, Gariboldi, M, and Gissi, C et al. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs." Nature 420, no. 6915 (December 5, 2002): 563-573. Full Text Open Access Copy Link to Item
- Jarvis, ED, Smith, VA, Wada, K, Rivas, MV, McElroy, M, Smulders, TV, Carninci, P, Hayashizaki, Y, Dietrich, F, Wu, X, McConnell, P, Yu, J, Wang, PP, Hartemink, AJ, and Lin, S. "A framework for integrating the songbird brain." J Comp Physiol A Neuroethol Sens Neural Behav Physiol 188, no. 11-12 (December 2002): 961-980. (Review) Full Text Open Access Copy Link to Item
- Smith, VA, Jarvis, ED, and Hartemink, AJ. "Evaluating functional network inference using simulations of complex biological systems." Bioinformatics 18 Suppl 1 (2002): S216-S224. Open Access Copy Link to Item
- Jarvis, E. "The importance of anatomical substrates." Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technolgoy, CBGIST 2001 (2001): 5--.
- Krebs, CJ, Jarvis, ED, Chan, J, Lydon, JP, Ogawa, S, and Pfaff, DW. "A membrane-associated progesterone-binding protein, 25-Dx, is regulated by progesterone in brain regions involved in female reproductive behaviors." Proc Natl Acad Sci U S A 97, no. 23 (November 7, 2000): 12816-12821. Full Text Open Access Copy Link to Item
- Jarvis, ED, Ribeiro, S, da Silva, ML, Ventura, D, Vielliard, J, and Mello, CV. "Behaviourally driven gene expression reveals song nuclei in hummingbird brain." Nature 406, no. 6796 (August 10, 2000): 628-632. Full Text Open Access Copy Link to Item
- Li, XC, Jarvis, ED, Alvarez-Borda, B, Lim, DA, and Nottebohm, F. "A relationship between behavior, neurotrophin expression, and new neuron survival." Proc Natl Acad Sci U S A 97, no. 15 (July 18, 2000): 8584-8589. Full Text Open Access Copy Link to Item
- Jarvis, ED, and Mello, CV. "Molecular mapping of brain areas involved in parrot vocal communication." J Comp Neurol 419, no. 1 (March 27, 2000): 1-31. Open Access Copy Link to Item
- Denisenko-Nehrbass, NI, Jarvis, E, Scharff, C, Nottebohm, F, and Mello, CV. "Site-specific retinoic acid production in the brain of adult songbirds." Neuron 27, no. 2 (2000): 359-370. Open Access Copy
- Rudner, R, Jarvis, ED, Adepoju, L, and Socher, R. "Cooperative colonial patterning in the genus B acillus." FASEB JOURNAL 13, no. 7 (April 23, 1999): A1543-A1543. Link to Item
- Krebs, CJ, Jarvis, ED, and Pfaff, DW. "The 70-kDa heat shock cognate protein (Hsc73) gene is enhanced by ovarian hormones in the ventromedial hypothalamus." Proc Natl Acad Sci U S A 96, no. 4 (February 16, 1999): 1686-1691. Open Access Copy Link to Item
- Mello, IV, and Jarvis, ED. "Chapter 2.2.2 Applying differential display to brain research." Techniques in the Behavioral and Neural Sciences 13, no. C (1999): 200-211. Full Text
- Rudner, R, and Jarvis, ED. "Response to Matsuyama and Matsushita's MicroCorrespondence regarding our paper 'Classification and genetic characterization of pattern-forming bacilli' mol microbiol (1998) 27: 687-703 Response to Matsuyama and Matsushita's MicroCorrespondence regarding our paper 'Classification and genetic characterization of pattern-forming bacilli' Mol Microbiol (1998) 27: 687-703 [4]." Molecular Microbiology 31, no. 4 (1999): 1279-1281. Full Text
- Jarvis, ED, Scharff, C, Grossman, MR, Ramos, JA, and Nottebohm, F. "For whom the bird sings: context-dependent gene expression." Neuron 21, no. 4 (October 1998): 775-788. Open Access Copy Link to Item
- Rudner, R, Martsinkevich, O, Leung, W, and Jarvis, ED. "Classification and genetic characterization of pattern-forming Bacilli." Mol Microbiol 27, no. 4 (February 1998): 687-703. Open Access Copy Link to Item
- Holzenberger, M, Jarvis, ED, Chong, C, Grossman, M, Nottebohm, F, and Scharff, C. "Selective expression of insulin-like growth factor II in the songbird brain." J Neurosci 17, no. 18 (September 15, 1997): 6974-6987. Open Access Copy Link to Item
- Jarvis, ED, Schwabl, H, Ribeiro, S, and Mello, CV. "Brain gene regulation by territorial singing behavior in freely ranging songbirds." Neuroreport 8, no. 8 (May 27, 1997): 2073-2077. Open Access Copy Link to Item
- Jarvis, ED, and Nottebohm, F. "Motor-driven gene expression." Proc Natl Acad Sci U S A 94, no. 8 (April 15, 1997): 4097-4102. Open Access Copy Link to Item
- Rivas, MV, Jarvis, ED, Morisaki, S, Carbonaro, H, Gottlieb, AB, and Krueger, JG. "Identification of aberrantly regulated genes in diseased skin using the cDNA differential display technique." J Invest Dermatol 108, no. 2 (February 1997): 188-194. Link to Item
- Mello, CV, Jarvis, ED, Denisenko, N, and Rivas, M. "Isolation of song-regulated genes in the brain of songbirds." Methods Mol Biol 85 (1997): 205-217. Full Text Link to Item
- Jarvis, ED, Mello, CV, and Nottebohm, F. "Associative learning and stimulus novelty influence the song-induced expression of an immediate early gene in the canary forebrain." Learn Mem 2, no. 2 (March 1995): 62-80. Link to Item
- Chew, SJ, Mello, C, Nottebohm, F, Jarvis, E, and Vicario, DS. "Decrements in auditory responses to a repeated conspecific song are long-lasting and require two periods of protein synthesis in the songbird forebrain." Proceedings of the National Academy of Sciences of the United States of America 92, no. 8 (1995): 3406-3410.
- Rudner, R, Studamire, B, and Jarvis, ED. "Determinations of restriction fragment length polymorphism in bacteria using ribosomal RNA genes." Methods Enzymol 235 (1994): 184-196. (Review) Link to Item
- Rudner, R, Chevrestt, A, Buchholz, SR, Studamire, B, White, AM, and Jarvis, ED. "Two tRNA gene clusters associated with rRNA operons rrnD and rrnE in Bacillus subtilis." J Bacteriol 175, no. 2 (January 1993): 503-509. Link to Item
- Jarvis, ED, Cheng, S, and Rudner, R. "Genetic structure and DNA sequences at junctions involved in the rearrangements of Bacillus subtilis strains carrying the trpE26 mutation." Genetics 126, no. 4 (December 1990): 785-797. Link to Item
- Rivas, MV, Jarvis, ED, and Rudner, R. "The structure of the trpE, trpD and 5' trpC genes of Bacillus pumilus." Gene 94, no. 1 (September 28, 1990): 141-143. Link to Item
- Rivas, MV, Jarvis, ED, and Rudner, R. "The structure of the trpE, trpD and 5' trpC genes of Bacillus pumilus." Gene 87, no. 1 (March 1, 1990): 71-78. Link to Item
- Jarvis, ED, Widom, RL, LaFauci, G, Setoguchi, Y, Richter, IR, and Rudner, R. "Chromosomal organization of rRNA operons in Bacillus subtilis." Genetics 120, no. 3 (November 1988): 625-635. Link to Item
- Widom, RL, Jarvis, ED, LaFauci, G, and Rudner, R. "Instability of rRNA operons in Bacillus subtilis." J Bacteriol 170, no. 2 (February 1988): 605-610. Link to Item
- LaFauci, G, Widom, RL, Eisner, RL, Jarvis, ED, and Rudner, R. "Mapping of rRNA genes with integrable plasmids in Bacillus subtilis." J Bacteriol 165, no. 1 (January 1986): 204-214. Link to Item
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Other Articles
- Rudner, R, and Jarvis, ED. "The name game." SCIENTIFIC AMERICAN 280, no. 2 (February 1999): 10-10. Link to Item
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