Erich David Jarvis
Adjunct Professor in the Deptartment of Neurobiology
Dr. Jarvis' laboratory studies the neurobiology of vocal communication. Emphasis is placed on the molecular pathways involved in the perception and production of learned vocalizations. They use an integrative approach that combines behavioral, anatomical, electrophysiological and molecular biological techniques. The main animal model used is songbirds, one of the few vertebrate groups that evolved the ability to learn vocalizations. The generality of the discoveries is tested in other vocal learning orders, such as parrots and hummingbirds, as well as non-vocal learners, such as pigeons and non-human primates. Some of the questions require performing behavior/molecular biology experiments in freely ranging animals, such as hummingbirds in tropical forest of Brazil. Recent results show that in songbirds, parrots and hummingbirds, perception and production of song are accompanied by anatomically distinct patterns of gene expression. All three groups were found to exhibit vocally-activated gene expression in exactly 7 forebrain nuclei that are very similar to each other. These structures for vocal learning and production are thought to have evolved independently within the past 70 million years, since they are absent from interrelated non-vocal learning orders. One structure, Area X of the basal ganglia's striatum in songbirds, shows large differential gene activation depending on the social context in which the bird sings. These differences may reflect a semantic content of song, perhaps similar to human language.
The overall goal of the research is to advance knowledge of the neural mechanisms for vocal learning and basic mechanisms of brain function. These goals are further achieved by combined collaborative efforts with the laboratories of Drs. Mooney and Nowicki at Duke University, who study respectively behavior and electrophysiological aspects of songbird vocal communication.
The overall goal of the research is to advance knowledge of the neural mechanisms for vocal learning and basic mechanisms of brain function. These goals are further achieved by combined collaborative efforts with the laboratories of Drs. Mooney and Nowicki at Duke University, who study respectively behavior and electrophysiological aspects of songbird vocal communication.
Current Appointments & Affiliations
- Adjunct Professor in the Deptartment of Neurobiology, Neurobiology, Basic Science Departments 2017
- Faculty Network Member of the Duke Institute for Brain Sciences, Duke Institute for Brain Sciences, University Institutes and Centers 2008
Contact Information
- Box 3209 Med Ctr, Durham, NC 27710
- The Rockefeller University, Box 54, 1230 York Avenue, New York, NY 10065
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jarvis@neuro.duke.edu
(212) 327-8806
- Background
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Education, Training, & Certifications
- Postdoctoral Fellow, Department Of Neurobiology, Rockefeller University 1995 - 1998
- Ph.D., Rockefeller University 1995
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Previous Appointments & Affiliations
- Professor of Neurobiology, Neurobiology, Basic Science Departments 2016 - 2017
- Associate Professor of Neurobiology, Neurobiology, Basic Science Departments 2005 - 2016
- Assistant Professor of Neurobiology, Neurobiology, Basic Science Departments 1998 - 2005
- Recognition
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In the News
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FEB 15, 2016 Duke Research Blog -
JAN 7, 2016 -
JAN 6, 2016 Molecular Biology of the Cell -
JAN 5, 2016 Molecular Biology of the Cell -
AUG 14, 2015 NPR’s “All Things Considered -
JUL 17, 2015 UNC-TV -
JUN 24, 2015 -
JUN 5, 2015 Duke Research Blog -
MAY 26, 2015 -
APR 1, 2015 The Guardian
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Awards & Honors
- Expertise
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Global Scholarship
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Research
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- Research
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Selected Grants
- Basic predoctoral training in neuroscience awarded by National Institutes of Health 1992 - 2018
- Center for Molecular & Cellular Studies of Ped Disease awarded by National Institutes of Health 2003 - 2018
- HARDAC+:Reproducible HPC for next-generation genomics awarded by North Carolina Biotechnology Center 2016 - 2017
- Training in Fundamental &Translational Neuroscience awarded by National Institutes of Health 2005 - 2016
- Illumina Hi-Seq 2000 Sequencing System awarded by National Institutes of Health 2012 - 2013
- Impact of early nutrition on neural mechanisms of signal processing awarded by National Institutes of Health 2010 - 2013
- CRCNS: Neural Flow Networks in Songbirds awarded by National Institutes of Health 2005 - 2012
- NIH Director's Pioneer Award awarded by National Institutes of Health 2005 - 2011
- Expansion of Capacity for Quantitative and Qualitative Differential Expression - Acquisition of an Integrated System for Nanoscale Capillary LC/MS/MS Analysis Using a UPLC/NanoMate/Q-Tof with On-line and Off-line Data Acquisition Capabilities awarded by National Institutes of Health 2010 - 2011
- Molecular Mechanisms of Basal Ganglia Regeneration in Songbirds awarded by National Institutes of Health 2006 - 2011
- Sensory- and motor-driven genes in vocal communication awarded by National Institutes of Health 2005 - 2011
- Auditory Protein Regulation in Normal & Abnormal States awarded by National Institutes of Health 2006 - 2009
- Functional analysis of ZENK gene expression by vector based RNAi knockdown awarded by National Science Foundation 2006 - 2009
- The Basal Ganglia System in Vocal Communication awarded by National Institutes of Health 2002 - 2005
- Alan T. Waterman Award awarded by National Science Foundation 2002 - 2005
- Avian brain nomenclature forum awarded by National Science Foundation 2002 - 2003
- Multiple disciplinary collaborative research: Evolution of brain structures for vocal learning in birds awarded by National Science Foundation 2000 - 2003
- Avian brain nomenclature forum awarded by National Institutes of Health 2001 - 2002
- Publications & Artistic Works
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Selected Publications
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Academic Articles
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Hickey, Glenn, Jean Monlong, Jana Ebler, Adam M. Novak, Jordan M. Eizenga, Yan Gao, Yan Human Pangenome Reference Consortium, Tobias Marschall, Heng Li, and Benedict Paten. “Pangenome graph construction from genome alignments with Minigraph-Cactus.” Nat Biotechnol, May 10, 2023. https://doi.org/10.1038/s41587-023-01793-w.Full Text Link to Item
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Guarracino, Andrea, Silvia Buonaiuto, Leonardo Gomes de Lima, Tamara Potapova, Arang Rhie, Sergey Koren, Boris Rubinstein, et al. “Recombination between heterologous human acrocentric chromosomes.” Nature 617, no. 7960 (May 2023): 335–43. https://doi.org/10.1038/s41586-023-05976-y.Full Text Link to Item
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Vollger, Mitchell R., Philip C. Dishuck, William T. Harvey, William S. DeWitt, Xavi Guitart, Michael E. Goldberg, Allison N. Rozanski, et al. “Increased mutation and gene conversion within human segmental duplications.” Nature 617, no. 7960 (May 2023): 325–34. https://doi.org/10.1038/s41586-023-05895-y.Full Text Link to Item
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Timoshevskaya, Nataliya, Kaan I. Eşkut, Vladimir A. Timoshevskiy, Sofia M. C. Robb, Carson Holt, Jon E. Hess, Hugo J. Parker, et al. “An improved germline genome assembly for the sea lamprey Petromyzon marinus illuminates the evolution of germline-specific chromosomes.” Cell Rep 42, no. 3 (March 28, 2023): 112263. https://doi.org/10.1016/j.celrep.2023.112263.Full Text Link to Item
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Huang, Zhen, Luohao Xu, Cheng Cai, Yitao Zhou, Jing Liu, Zaoxu Xu, Zexian Zhu, et al. “Three amphioxus reference genomes reveal gene and chromosome evolution of chordates.” Proc Natl Acad Sci U S A 120, no. 10 (March 7, 2023): e2201504120. https://doi.org/10.1073/pnas.2201504120.Full Text Link to Item
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Bentley, B. P., T. Carrasco-Valenzuela, E. K. S. Ramos, H. Pawar, L. S. Arantes, A. Alexander, S. M. Banerjee, et al. “Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories.” Proceedings of the National Academy of Sciences of the United States of America 120, no. 7 (February 14, 2023). https://doi.org/10.1073/pnas.2201076120.Full Text
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Davenport, Matthew H., and Erich D. Jarvis. “Birdsong neuroscience and the evolutionary substrates of learned vocalization.” Trends in Neurosciences 46, no. 2 (February 2023): 97–99. https://doi.org/10.1016/j.tins.2022.11.005.Full Text
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Theofanopoulou, Constantina, and Erich D. Jarvis. “Reply to: The case for standardizing gene nomenclature in vertebrates.” Nature 614, no. 7948 (February 2023): E33–36. https://doi.org/10.1038/s41586-022-05634-9.Full Text Link to Item
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Secomandi, Simona, Guido R. Gallo, Marcella Sozzoni, Alessio Iannucci, Elena Galati, Linelle Abueg, Jennifer Balacco, et al. “A chromosome-level reference genome and pangenome for barn swallow population genomics.” Cell Rep 42, no. 1 (January 31, 2023): 111992. https://doi.org/10.1016/j.celrep.2023.111992.Full Text Link to Item
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Meyer, B. S., M. Moiron, C. Caswara, W. Chow, O. Fedrigo, G. Formenti, B. Haase, et al. “Sex-specific changes in autosomal methylation rate in ageing common terns.” Frontiers in Ecology and Evolution 11 (January 30, 2023). https://doi.org/10.3389/fevo.2023.982443.Full Text
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Karawita, Anjana C., Yuanyuan Cheng, Keng Yih Chew, Arjun Challagulla, Robert Kraus, Ralf C. Mueller, Marcus Z. W. Tong, et al. “The swan genome and transcriptome, it is not all black and white.” Genome Biol 24, no. 1 (January 23, 2023): 13. https://doi.org/10.1186/s13059-022-02838-0.Full Text Link to Item
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Stoumpou, V., C. D. M. Vargas, P. F. Schade, J. L. Boyd, T. Giannakopoulos, and E. D. Jarvis. “Analysis of Mouse Vocal Communication (AMVOC): a deep, unsupervised method for rapid detection, analysis and classification of ultrasonic vocalisations.” Bioacoustics 32, no. 2 (January 1, 2023): 199–229. https://doi.org/10.1080/09524622.2022.2099973.Full Text
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Theissinger, K., C. Fernandes, G. Formenti, I. Bista, P. R. Berg, C. Bleidorn, A. Bombarely, et al. “How genomics can help biodiversity conservation.” Trends in Genetics, January 1, 2023. https://doi.org/10.1016/j.tig.2023.01.005.Full Text
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Jarvis, Erich D., Giulio Formenti, Arang Rhie, Andrea Guarracino, Chentao Yang, Jonathan Wood, Alan Tracey, et al. “Semi-automated assembly of high-quality diploid human reference genomes.” Nature 611, no. 7936 (November 2022): 519–31. https://doi.org/10.1038/s41586-022-05325-5.Full Text Link to Item
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Toh, Huishi, Chentao Yang, Giulio Formenti, Kalpana Raja, Lily Yan, Alan Tracey, William Chow, et al. “A haplotype-resolved genome assembly of the Nile rat facilitates exploration of the genetic basis of diabetes.” Bmc Biology 20, no. 1 (November 2022): 245. https://doi.org/10.1186/s12915-022-01427-8.Full Text
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Kim, Juwan, Chul Lee, Byung June Ko, Dong Ahn Yoo, Sohyoung Won, Adam M. Phillippy, Olivier Fedrigo, et al. “False gene and chromosome losses in genome assemblies caused by GC content variation and repeats.” Genome Biol 23, no. 1 (September 27, 2022): 204. https://doi.org/10.1186/s13059-022-02765-0.Full Text Link to Item
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Ko, Byung June, Chul Lee, Juwan Kim, Arang Rhie, Dong Ahn Yoo, Kerstin Howe, Jonathan Wood, et al. “Widespread false gene gains caused by duplication errors in genome assemblies.” Genome Biol 23, no. 1 (September 27, 2022): 205. https://doi.org/10.1186/s13059-022-02764-1.Full Text Link to Item
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Formenti, Giulio, Linelle Abueg, Angelo Brajuka, Nadolina Brajuka, Cristóbal Gallardo-Alba, Alice Giani, Olivier Fedrigo, and Erich D. Jarvis. “Gfastats: conversion, evaluation and manipulation of genome sequences using assembly graphs.” Bioinformatics 38, no. 17 (September 2, 2022): 4214–16. https://doi.org/10.1093/bioinformatics/btac460.Full Text Link to Item
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Cheng, Haoyu, Erich D. Jarvis, Olivier Fedrigo, Klaus-Peter Koepfli, Lara Urban, Neil J. Gemmell, and Heng Li. “Haplotype-resolved assembly of diploid genomes without parental data.” Nat Biotechnol 40, no. 9 (September 2022): 1332–35. https://doi.org/10.1038/s41587-022-01261-x.Full Text Link to Item
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Schuppe, Eric R., Lindsey Cantin, Mukta Chakraborty, Matthew T. Biegler, Electra R. Jarvis, Chun-Chun Chen, Erina Hara, et al. “Forebrain nuclei linked to woodpecker territorial drum displays mirror those that enable vocal learning in songbirds.” Plos Biol 20, no. 9 (September 2022): e3001751. https://doi.org/10.1371/journal.pbio.3001751.Full Text Link to Item
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Dahn, Hollis A., Jacquelyn Mountcastle, Jennifer Balacco, Sylke Winkler, Iliana Bista, Anthony D. Schmitt, Olga Vinnere Pettersson, et al. “Benchmarking ultra-high molecular weight DNA preservation methods for long-read and long-range sequencing.” Gigascience 11 (August 10, 2022). https://doi.org/10.1093/gigascience/giac068.Full Text Link to Item
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Dussex, Nicolas, Bruce C. Robertson, Love Dalén, and Erich D. Jarvis. “The kākāpō (Strigops habroptilus).” Trends in Genetics : Tig 38, no. 8 (August 2022): 881–82. https://doi.org/10.1016/j.tig.2022.03.004.Full Text
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Theofanopoulou, C., A. Andirkó, C. Boeckx, and E. D. Jarvis. “Oxytocin and vasotocin receptor variation and the evolution of human prosociality.” Comprehensive Psychoneuroendocrinology 11 (August 1, 2022). https://doi.org/10.1016/j.cpnec.2022.100139.Full Text
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Paez, Sadye, Robert H. S. Kraus, Beth Shapiro, M Thomas P. Gilbert, Erich D. Jarvis, Erich D. Vertebrate Genomes Project Conservation Group, Farooq Omar Al-Ajli, et al. “Reference genomes for conservation.” Science 377, no. 6604 (July 22, 2022): 364–66. https://doi.org/10.1126/science.abm8127.Full Text Link to Item
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Hardwick, Simon A., Wen Hu, Anoushka Joglekar, Li Fan, Paul G. Collier, Careen Foord, Jennifer Balacco, et al. “Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue.” Nat Biotechnol 40, no. 7 (July 2022): 1082–92. https://doi.org/10.1038/s41587-022-01231-3.Full Text Link to Item
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Formenti, Giulio, Arang Rhie, Brian P. Walenz, Françoise Thibaud-Nissen, Kishwar Shafin, Sergey Koren, Eugene W. Myers, Erich D. Jarvis, and Adam M. Phillippy. “Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation.” Nat Methods 19, no. 6 (June 2022): 696–704. https://doi.org/10.1038/s41592-022-01445-y.Full Text Link to Item
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Nurk, Sergey, Sergey Koren, Arang Rhie, Mikko Rautiainen, Andrey V. Bzikadze, Alla Mikheenko, Mitchell R. Vollger, et al. “The complete sequence of a human genome.” Science 376, no. 6588 (April 2022): 44–53. https://doi.org/10.1126/science.abj6987.Full Text Link to Item
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Palmada-Flores, Marc, Joseph D. Orkin, Bettina Haase, Jacquelyn Mountcastle, Mads F. Bertelsen, Olivier Fedrigo, Lukas F. K. Kuderna, Erich D. Jarvis, and Tomas Marques-Bonet. “A high-quality, long-read genome assembly of the endangered ring-tailed lemur (Lemur catta).” Gigascience 11 (April 1, 2022). https://doi.org/10.1093/gigascience/giac026.Full Text Link to Item
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Wang, Ting, Lucinda Antonacci-Fulton, Kerstin Howe, Heather A. Lawson, Julian K. Lucas, Adam M. Phillippy, Alice B. Popejoy, et al. “The Human Pangenome Project: a global resource to map genomic diversity.” Nature 604, no. 7906 (April 2022): 437–46. https://doi.org/10.1038/s41586-022-04601-8.Full Text Link to Item
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Biegler, Matthew T., Olivier Fedrigo, Paul Collier, Jacquelyn Mountcastle, Bettina Haase, Hagen U. Tilgner, and Erich D. Jarvis. “Induction of an immortalized songbird cell line allows for gene characterization and knockout by CRISPR-Cas9.” Sci Rep 12, no. 1 (March 14, 2022): 4369. https://doi.org/10.1038/s41598-022-07434-7.Full Text Link to Item
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Ebenezer, ThankGod Echezona, Anne W. T. Muigai, Simplice Nouala, Bouabid Badaoui, Mark Blaxter, Alan G. Buddie, Erich D. Jarvis, et al. “Africa: sequence 100,000 species to safeguard biodiversity.” Nature 603, no. 7901 (March 2022): 388–92. https://doi.org/10.1038/d41586-022-00712-4.Full Text Link to Item
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Formenti, Giulio, Kathrin Theissinger, Carlos Fernandes, Iliana Bista, Aureliano Bombarely, Christoph Bleidorn, Claudio Ciofi, et al. “The era of reference genomes in conservation genomics.” Trends Ecol Evol 37, no. 3 (March 2022): 197–202. https://doi.org/10.1016/j.tree.2021.11.008.Full Text Link to Item
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Sahajpal, N. S., C. Y. Jill Lai, A. Hastie, A. K. Mondal, S. R. Dehkordi, C. I. van der Made, O. Fedrigo, et al. “Optical genome mapping identifies rare structural variations as predisposition factors associated with severe COVID-19.” Iscience 25, no. 2 (February 18, 2022). https://doi.org/10.1016/j.isci.2022.103760.Full Text
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Tobari, Yasuko, Constantina Theofanopoulou, Chihiro Mori, Yoshimi Sato, Momoka Marutani, Sayaka Fujioka, Norifumi Konno, et al. “Oxytocin variation and brain region-specific gene expression in a domesticated avian species.” Genes Brain Behav 21, no. 2 (February 2022): e12780. https://doi.org/10.1111/gbb.12780.Full Text Link to Item
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Blaxter, Mark, John M. Archibald, Anna K. Childers, Jonathan A. Coddington, Keith A. Crandall, Federica Di Palma, Richard Durbin, et al. “Why sequence all eukaryotes?” Proc Natl Acad Sci U S A 119, no. 4 (January 25, 2022). https://doi.org/10.1073/pnas.2115636118.Full Text Link to Item
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Lawniczak, Mara K. N., Richard Durbin, Paul Flicek, Kerstin Lindblad-Toh, Xiaofeng Wei, John M. Archibald, William J. Baker, et al. “Standards recommendations for the Earth BioGenome Project.” Proc Natl Acad Sci U S A 119, no. 4 (January 25, 2022). https://doi.org/10.1073/pnas.2115639118.Full Text Link to Item
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Lewin, Harris A., Stephen Richards, Erez Lieberman Aiden, Miguel L. Allende, John M. Archibald, Miklós Bálint, Katharine B. Barker, et al. “The Earth BioGenome Project 2020: Starting the clock.” Proc Natl Acad Sci U S A 119, no. 4 (January 25, 2022). https://doi.org/10.1073/pnas.2115635118.Full Text Link to Item
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Stephan, Taylorlyn, Shawn M. Burgess, Hans Cheng, Charles G. Danko, Clare A. Gill, Erich D. Jarvis, Klaus-Peter Koepfli, et al. “Darwinian genomics and diversity in the tree of life.” Proc Natl Acad Sci U S A 119, no. 4 (January 25, 2022). https://doi.org/10.1073/pnas.2115644119.Full Text Link to Item
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Mueller, Ralf C., Patrik Ellström, Kerstin Howe, Marcela Uliano-Silva, Richard I. Kuo, Katarzyna Miedzinska, Amanda Warr, et al. “A high-quality genome and comparison of short- versus long-read transcriptome of the palaearctic duck Aythya fuligula (tufted duck).” Gigascience 10, no. 12 (December 20, 2021). https://doi.org/10.1093/gigascience/giab081.Full Text Link to Item
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Cahill, James A., Joel Armstrong, Alden Deran, Carolyn J. Khoury, Benedict Paten, David Haussler, and Erich D. Jarvis. “Positive selection in noncoding genomic regions of vocal learning birds is associated with genes implicated in vocal learning and speech functions in humans.” Genome Res 31, no. 11 (November 2021): 2035–49. https://doi.org/10.1101/gr.275989.121.Full Text Link to Item
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Dussex, Nicolas, Tom van der Valk, Hernán E. Morales, Christopher W. Wheat, David Díez-Del-Molino, Johanna von Seth, Yasmin Foster, et al. “Population genomics of the critically endangered kākāpō.” Cell Genom 1, no. 1 (October 13, 2021): 100002. https://doi.org/10.1016/j.xgen.2021.100002.Full Text Link to Item
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Peart, Claire R., Christina Williams, Saurabh D. Pophaly, Benjamin A. Neely, Frances M. D. Gulland, David J. Adams, Bee Ling Ng, et al. “Hi-C scaffolded short- and long-read genome assemblies of the California sea lion are broadly consistent for syntenic inference across 45 million years of evolution.” Mol Ecol Resour 21, no. 7 (October 2021): 2455–70. https://doi.org/10.1111/1755-0998.13443.Full Text Link to Item
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Biegler, Matthew T., Lindsey J. Cantin, Danielle L. Scarano, and Erich D. Jarvis. “Controlling for activity-dependent genes and behavioral states is critical for determining brain relationships within and across species.” J Comp Neurol 529, no. 12 (August 2021): 3206–21. https://doi.org/10.1002/cne.25157.Full Text Link to Item
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Gedman, Gregory, Bettina Haase, Gillian Durieux, Matthew T. Biegler, Olivier Fedrigo, and Erich D. Jarvis. “As above, so below: Whole transcriptome profiling demonstrates strong molecular similarities between avian dorsal and ventral pallial subdivisions.” J Comp Neurol 529, no. 12 (August 2021): 3222–46. https://doi.org/10.1002/cne.25159.Full Text Link to Item
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Yang, Chentao, Yang Zhou, Stephanie Marcus, Giulio Formenti, Lucie A. Bergeron, Zhenzhen Song, Xupeng Bi, et al. “Evolutionary and biomedical insights from a marmoset diploid genome assembly.” Nature 594, no. 7862 (June 2021): 227–33. https://doi.org/10.1038/s41586-021-03535-x.Full Text Link to Item
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Choe, Ha Na, and Erich D. Jarvis. “The role of sex chromosomes and sex hormones in vocal learning systems.” Horm Behav 132 (June 2021): 104978. https://doi.org/10.1016/j.yhbeh.2021.104978.Full Text Link to Item
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Melin, Amanda D., Joseph D. Orkin, Mareike C. Janiak, Alejandro Valenzuela, Lukas Kuderna, Frank Marrone, Hasinala Ramangason, et al. “Variation in predicted COVID-19 risk among lemurs and lorises.” Am J Primatol 83, no. 6 (June 2021): e23255. https://doi.org/10.1002/ajp.23255.Full Text Link to Item
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Tchernichovski, Ofer, Sophie Eisenberg-Edidin, and Erich D. Jarvis. “Balanced imitation sustains song culture in zebra finches.” Nat Commun 12, no. 1 (May 7, 2021): 2562. https://doi.org/10.1038/s41467-021-22852-3.Full Text Link to Item
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Morin, Phillip A., Frederick I. Archer, Catherine D. Avila, Jennifer R. Balacco, Yury V. Bukhman, William Chow, Olivier Fedrigo, et al. “Reference genome and demographic history of the most endangered marine mammal, the vaquita.” Mol Ecol Resour 21, no. 4 (May 2021): 1008–20. https://doi.org/10.1111/1755-0998.13284.Full Text Link to Item
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Formenti, Giulio, Arang Rhie, Jennifer Balacco, Bettina Haase, Jacquelyn Mountcastle, Olivier Fedrigo, Samara Brown, et al. “Complete vertebrate mitogenomes reveal widespread repeats and gene duplications.” Genome Biol 22, no. 1 (April 29, 2021): 120. https://doi.org/10.1186/s13059-021-02336-9.Full Text Link to Item
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Kronenberg, Zev N., Arang Rhie, Sergey Koren, Gregory T. Concepcion, Paul Peluso, Katherine M. Munson, David Porubsky, et al. “Extended haplotype-phasing of long-read de novo genome assemblies using Hi-C.” Nat Commun 12, no. 1 (April 28, 2021): 1935. https://doi.org/10.1038/s41467-020-20536-y.Full Text Link to Item
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Theofanopoulou, Constantina, Gregory Gedman, James A. Cahill, Cedric Boeckx, and Erich D. Jarvis. “Universal nomenclature for oxytocin-vasotocin ligand and receptor families.” Nature 592, no. 7856 (April 2021): 747–55. https://doi.org/10.1038/s41586-020-03040-7.Full Text Link to Item
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Zhou, Yang, Linda Shearwin-Whyatt, Jing Li, Zhenzhen Song, Takashi Hayakawa, David Stevens, Jane C. Fenelon, et al. “Platypus and echidna genomes reveal mammalian biology and evolution.” Nature 592, no. 7856 (April 2021): 756–62. https://doi.org/10.1038/s41586-020-03039-0.Full Text Link to Item
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Jarvis, Erich D. “At the beginning of speciation.” Science 371, no. 6536 (March 26, 2021): 1312. https://doi.org/10.1126/science.abg5454.Full Text Link to Item
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Choe, Ha Na, Jeevan Tewari, Kevin W. Zhu, Matthew Davenport, Hiroaki Matsunami, and Erich D. Jarvis. “Estrogen and sex-dependent loss of the vocal learning system in female zebra finches.” Horm Behav 129 (March 2021): 104911. https://doi.org/10.1016/j.yhbeh.2020.104911.Full Text Link to Item
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Liu, Jing, Zongji Wang, Jing Li, Luohao Xu, Jiaqi Liu, Shaohong Feng, Chunxue Guo, et al. “A new emu genome illuminates the evolution of genome configuration and nuclear architecture of avian chromosomes.” Genome Res 31, no. 3 (March 2021): 497–511. https://doi.org/10.1101/gr.271569.120.Full Text Link to Item
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Joglekar, Anoushka, Andrey Prjibelski, Ahmed Mahfouz, Paul Collier, Susan Lin, Anna Katharina Schlusche, Jordan Marrocco, et al. “A spatially resolved brain region- and cell type-specific isoform atlas of the postnatal mouse brain.” Nat Commun 12, no. 1 (January 19, 2021): 463. https://doi.org/10.1038/s41467-020-20343-5.Full Text Link to Item
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Li, Jing, Jilin Zhang, Jing Liu, Yang Zhou, Cheng Cai, Luohao Xu, Xuelei Dai, et al. “A new duck genome reveals conserved and convergently evolved chromosome architectures of birds and mammals.” Gigascience 10, no. 1 (January 6, 2021). https://doi.org/10.1093/gigascience/giaa142.Full Text Link to Item
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Hyland Bruno, J., E. D. Jarvis, M. Liberman, and O. Tchernichovski. “Birdsong Learning and Culture: Analogies with Human Spoken Language.” Annual Review of Linguistics 7 (January 4, 2021): 449–72. https://doi.org/10.1146/annurev-linguistics-090420-121034.Full Text
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Blaxter, M., T. Hansen, P. G. Fjelldal, S. Lien, M. Smith, C. Corton, K. Oliver, et al. “The genome sequence of the brown trout, Salmo trutta Linnaeus 1758.” Wellcome Open Research 6 (January 1, 2021). https://doi.org/10.12688/wellcomeopenres.16838.1.Full Text
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Walløe, Solveig, Mukta Chakraborty, Thorsten J. S. Balsby, Erich D. Jarvis, Torben Dabelsteen, and Bente Pakkenberg. “A Relationship between the Characteristics of the Oval Nucleus of the Mesopallium and Parrot Vocal Response to Playback.” Brain Behav Evol 96, no. 1 (2021): 37–48. https://doi.org/10.1159/000517489.Full Text Link to Item
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Armstrong, Joel, Glenn Hickey, Mark Diekhans, Ian T. Fiddes, Adam M. Novak, Alden Deran, Qi Fang, et al. “Progressive Cactus is a multiple-genome aligner for the thousand-genome era.” Nature 587, no. 7833 (November 2020): 246–51. https://doi.org/10.1038/s41586-020-2871-y.Full Text Link to Item
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Morin, P. A., A. Alexander, M. Blaxter, S. Caballero, O. Fedrigo, M. C. Fontaine, A. D. Foote, et al. “Building genomic infrastructure: Sequencing platinum-standard reference-quality genomes of all cetacean species.” Marine Mammal Science 36, no. 4 (October 1, 2020): 1356–66. https://doi.org/10.1111/mms.12721.Full Text
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Jebb, David, Zixia Huang, Martin Pippel, Graham M. Hughes, Ksenia Lavrichenko, Paolo Devanna, Sylke Winkler, et al. “Six reference-quality genomes reveal evolution of bat adaptations.” Nature 583, no. 7817 (July 2020): 578–84. https://doi.org/10.1038/s41586-020-2486-3.Full Text Link to Item
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Ksepka, Daniel T., Amy M. Balanoff, N Adam Smith, Gabriel S. Bever, Bhart-Anjan S. Bhullar, Estelle Bourdon, Edward L. Braun, et al. “Tempo and Pattern of Avian Brain Size Evolution.” Curr Biol 30, no. 11 (June 8, 2020): 2026-2036.e3. https://doi.org/10.1016/j.cub.2020.03.060.Full Text Link to Item
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Campana, Michael G., André Corvelo, Jennifer Shelton, Taylor E. Callicrate, Karen L. Bunting, Bridget Riley-Gillis, Frank Wos, Justin DeGrazia, Erich D. Jarvis, and Robert C. Fleischer. “Adaptive Radiation Genomics of Two Ecologically Divergent Hawai'ian Honeycreepers: The 'akiapōlā'au and the Hawai'i 'amakihi.” J Hered 111, no. 1 (February 5, 2020): 21–32. https://doi.org/10.1093/jhered/esz057.Full Text Link to Item
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Blaxter, M., D. Mead, K. Fingland, R. Cripps, R. Portela Miguez, M. Smith, C. Corton, et al. “The genome sequence of the Eurasian red squirrel, Sciurus vulgaris Linnaeus 1758.” Wellcome Open Research 5 (January 1, 2020). https://doi.org/10.12688/wellcomeopenres.15679.1.Full Text
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Fonseca, Rute R. da, Alvarina Couto, Andre M. Machado, Brona Brejova, Carolin B. Albertin, Filipe Silva, Paul Gardner, et al. “A draft genome sequence of the elusive giant squid, Architeuthis dux.” Gigascience 9, no. 1 (January 1, 2020). https://doi.org/10.1093/gigascience/giz152.Full Text Link to Item
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Jung, Kyung Min, Young Min Kim, Anna L. Keyte, Matthew T. Biegler, Deivendran Rengaraj, Hong Jo Lee, Claudio V. Mello, et al. “Identification and characterization of primordial germ cells in a vocal learning Neoaves species, the zebra finch.” Faseb J 33, no. 12 (December 2019): 13825–36. https://doi.org/10.1096/fj.201900760RR.Full Text Link to Item
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Jarvis, Erich D. “Evolution of vocal learning and spoken language.” Science 366, no. 6461 (October 4, 2019): 50–54. https://doi.org/10.1126/science.aax0287.Full Text Link to Item
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Khan, I., E. Maldonado, L. Silva, D. Almeida, W. E. Johnson, S. J. O’Brien, G. Zhang, E. D. Jarvis, M. Thomas, and A. Antunes. “The vertebrate TLR supergene family evolved dynamically by gene gain/loss and positive selection revealing a host-pathogen arms race in birds.” Diversity 11, no. 8 (August 1, 2019). https://doi.org/10.3390/d11080131.Full Text
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Borges, Rui, João Fonseca, Cidália Gomes, Warren E. Johnson, Stephen J. O’Brien, Guojie Zhang, M Thomas P. Gilbert, Erich D. Jarvis, and Agostinho Antunes. “Avian Binocularity and Adaptation to Nocturnal Environments: Genomic Insights from a Highly Derived Visual Phenotype.” Genome Biol Evol 11, no. 8 (August 1, 2019): 2244–55. https://doi.org/10.1093/gbe/evz111.Full Text Link to Item
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Wirthlin, Morgan, Nicholas C. B. Lima, Rafael Lucas Muniz Guedes, André E. R. Soares, Luiz Gonzaga P. Almeida, Nathalia P. Cavaleiro, Guilherme Loss de Morais, et al. “Parrot Genomes and the Evolution of Heightened Longevity and Cognition.” Curr Biol 28, no. 24 (December 17, 2018): 4001-4008.e7. https://doi.org/10.1016/j.cub.2018.10.050.Full Text Link to Item
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Sarkar, A., J. Chabout, J. J. Macopson, E. D. Jarvis, and D. B. Dunson. “Bayesian Semiparametric Mixed Effects Markov Models With Application to Vocalization Syntax.” Journal of the American Statistical Association 113, no. 524 (October 2, 2018): 1515–27. https://doi.org/10.1080/01621459.2018.1423986.Full Text
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Lewin, Harris A., Gene E. Robinson, W John Kress, William J. Baker, Jonathan Coddington, Keith A. Crandall, Richard Durbin, et al. “Earth BioGenome Project: Sequencing life for the future of life.” Proc Natl Acad Sci U S A 115, no. 17 (April 24, 2018): 4325–33. https://doi.org/10.1073/pnas.1720115115.Full Text Link to Item
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Audet, Jean-Nicolas, Lima Kayello, Simon Ducatez, Sara Perillo, Laure Cauchard, Jason T. Howard, Lauren A. O’Connell, Erich D. Jarvis, and Louis Lefebvre. “Divergence in problem-solving skills is associated with differential expression of glutamate receptors in wild finches.” Sci Adv 4, no. 3 (March 2018): eaao6369. https://doi.org/10.1126/sciadv.aao6369.Full Text Link to Item
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Lei, Huimeng, Zhangming Yan, Xiaohong Sun, Yue Zhang, Jianhong Wang, Caihong Ma, Qunyuan Xu, Rui Wang, Erich D. Jarvis, and Zhirong Sun. “Axon guidance pathways served as common targets for human speech/language evolution and related disorders.” Brain Lang 174 (November 2017): 1–8. https://doi.org/10.1016/j.bandl.2017.06.007.Full Text Link to Item
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Korlach, Jonas, Gregory Gedman, Sarah B. Kingan, Chen-Shan Chin, Jason T. Howard, Jean-Nicolas Audet, Lindsey Cantin, and Erich D. Jarvis. “De novo PacBio long-read and phased avian genome assemblies correct and add to reference genes generated with intermediate and short reads.” Gigascience 6, no. 10 (October 1, 2017): 1–16. https://doi.org/10.1093/gigascience/gix085.Full Text Link to Item
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Theofanopoulou, Constantina, Cedric Boeckx, and Erich D. Jarvis. “A hypothesis on a role of oxytocin in the social mechanisms of speech and vocal learning.” Proc Biol Sci 284, no. 1861 (August 30, 2017). https://doi.org/10.1098/rspb.2017.0988.Full Text Link to Item
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Chabout, Jonathan, Joshua Jones-Macopson, and Erich D. Jarvis. “Eliciting and Analyzing Male Mouse Ultrasonic Vocalization (USV) Songs.” J Vis Exp, no. 123 (May 9, 2017). https://doi.org/10.3791/54137.Full Text Link to Item
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Chakraborty, Mukta, Liang-Fu Chen, Emma E. Fridel, Marguerita E. Klein, Rebecca A. Senft, Abhra Sarkar, and Erich D. Jarvis. “Overexpression of human NR2B receptor subunit in LMAN causes stuttering and song sequence changes in adult zebra finches.” Sci Rep 7, no. 1 (April 21, 2017): 942. https://doi.org/10.1038/s41598-017-00519-8.Full Text Link to Item
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Farré, Marta, Jitendra Narayan, Gancho T. Slavov, Joana Damas, Loretta Auvil, Cai Li, Erich D. Jarvis, David W. Burt, Darren K. Griffin, and Denis M. Larkin. “Novel Insights into Chromosome Evolution in Birds, Archosaurs, and Reptiles.” Genome Biol Evol 8, no. 8 (August 25, 2016): 2442–51. https://doi.org/10.1093/gbe/evw166.Full Text Link to Item
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Machado, João Paulo, Warren E. Johnson, M Thomas P. Gilbert, Guojie Zhang, Erich D. Jarvis, Stephen J. O’Brien, and Agostinho Antunes. “Bone-associated gene evolution and the origin of flight in birds.” Bmc Genomics 17 (May 18, 2016): 371. https://doi.org/10.1186/s12864-016-2681-7.Full Text Link to Item
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Almeida, Daniela, Emanuel Maldonado, Imran Khan, Liliana Silva, M Thomas P. Gilbert, Guojie Zhang, Erich D. Jarvis, Stephen J. O’Brien, Warren E. Johnson, and Agostinho Antunes. “Whole-Genome Identification, Phylogeny, and Evolution of the Cytochrome P450 Family 2 (CYP2) Subfamilies in Birds.” Genome Biol Evol 8, no. 4 (April 13, 2016): 1115–31. https://doi.org/10.1093/gbe/evw041.Full Text Link to Item
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Chabout, Jonathan, Abhra Sarkar, Sheel R. Patel, Taylor Radden, David B. Dunson, Simon E. Fisher, and Erich D. Jarvis. “A Foxp2 Mutation Implicated in Human Speech Deficits Alters Sequencing of Ultrasonic Vocalizations in Adult Male Mice.” Front Behav Neurosci 10 (2016): 197. https://doi.org/10.3389/fnbeh.2016.00197.Full Text Open Access Copy Link to Item
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Jarvis, Erich D. “Perspectives from the Avian Phylogenomics Project: Questions that Can Be Answered with Sequencing All Genomes of a Vertebrate Class.” Annu Rev Anim Biosci 4 (2016): 45–59. https://doi.org/10.1146/annurev-animal-021815-111216.Full Text Link to Item
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Chakraborty, Mukta, and Erich D. Jarvis. “Brain evolution by brain pathway duplication.” Philos Trans R Soc Lond B Biol Sci 370, no. 1684 (December 19, 2015). https://doi.org/10.1098/rstb.2015.0056.Full Text Open Access Copy Link to Item
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Khan, Imran, Zhikai Yang, Emanuel Maldonado, Cai Li, Guojie Zhang, M Thomas P. Gilbert, Erich D. Jarvis, Stephen J. O’Brien, Warren E. Johnson, and Agostinho Antunes. “Olfactory Receptor Subgenomes Linked with Broad Ecological Adaptations in Sauropsida.” Mol Biol Evol 32, no. 11 (November 2015): 2832–43. https://doi.org/10.1093/molbev/msv155.Full Text Open Access Copy Link to Item
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Jarvis, Erich D. “Surviving as an underrepresented minority scientist in a majority environment.” Mol Biol Cell 26, no. 21 (November 1, 2015): 3692–96. https://doi.org/10.1091/mbc.E15-06-0451.Full Text Open Access Copy Link to Item
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Jarvis, Erich D. “Listening in.” Elife 4 (October 21, 2015): e11665. https://doi.org/10.7554/eLife.11665.Full Text Open Access Copy Link to Item
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Borges, Rui, Imran Khan, Warren E. Johnson, M Thomas P. Gilbert, Guojie Zhang, Erich D. Jarvis, Stephen J. O’Brien, and Agostinho Antunes. “Gene loss, adaptive evolution and the co-evolution of plumage coloration genes with opsins in birds.” Bmc Genomics 16 (October 6, 2015): 751. https://doi.org/10.1186/s12864-015-1924-3.Full Text Open Access Copy Link to Item
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Brusatte, Stephen L., Jingmai K. O’Connor, and Erich D. Jarvis. “The Origin and Diversification of Birds.” Curr Biol 25, no. 19 (October 5, 2015): R888–98. https://doi.org/10.1016/j.cub.2015.08.003.Full Text Open Access Copy Link to Item
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Cracraft, Joel, Peter Houde, Simon Y. W. Ho, David P. Mindell, Jon Fjeldså, Bent Lindow, Scott V. Edwards, et al. “Response to Comment on "Whole-genome analyses resolve early branches in the tree of life of modern birds".” Science 349, no. 6255 (September 25, 2015): 1460. https://doi.org/10.1126/science.aab1578.Full Text Open Access Copy Link to Item
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Arriaga, Gustavo, Joshua J. Macopson, and Erich D. Jarvis. “Transsynaptic Tracing from Peripheral Targets with Pseudorabies Virus Followed by Cholera Toxin and Biotinylated Dextran Amines Double Labeling.” J Vis Exp, no. 103 (September 14, 2015). https://doi.org/10.3791/50672.Full Text Open Access Copy Link to Item
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Ribeiro, Ângela M., M Lisandra Zepeda-Mendoza, Mads F. Bertelsen, Annemarie T. Kristensen, Erich D. Jarvis, M Thomas P. Gilbert, and Rute R. da Fonseca. “A refined model of the genomic basis for phenotypic variation in vertebrate hemostasis.” Bmc Evol Biol 15 (June 30, 2015): 124. https://doi.org/10.1186/s12862-015-0409-y.Full Text Open Access Copy Link to Item
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Wang, Rui, Chun-Chun Chen, Erina Hara, Miriam V. Rivas, Petra L. Roulhac, Jason T. Howard, Mukta Chakraborty, Jean-Nicolas Audet, and Erich D. Jarvis. “Convergent differential regulation of SLIT-ROBO axon guidance genes in the brains of vocal learners.” J Comp Neurol 523, no. 6 (April 15, 2015): 892–906. https://doi.org/10.1002/cne.23719.Full Text Open Access Copy Link to Item
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Chabout, Jonathan, Abhra Sarkar, David B. Dunson, and Erich D. Jarvis. “Male mice song syntax depends on social contexts and influences female preferences.” Frontiers in Behavioral Neuroscience 9 (April 1, 2015). https://doi.org/10.3389/fnbh.2015.00076.Full Text Open Access Copy Link to Item
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Eöry, Lél, M Thomas P. Gilbert, Cai Li, Bo Li, Alan Archibald, Bronwen L. Aken, Guojie Zhang, Erich Jarvis, Paul Flicek, and David W. Burt. “Avianbase: a community resource for bird genomics.” Genome Biol 16, no. 1 (January 29, 2015): 21. https://doi.org/10.1186/s13059-015-0588-2.Full Text Open Access Copy Link to Item
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Chabout, Jonathan, Abhra Sarkar, David B. Dunson, and Erich D. Jarvis. “Male mice song syntax depends on social contexts and influences female preferences.” Front Behav Neurosci 9 (2015): 76. https://doi.org/10.3389/fnbeh.2015.00076.Full Text Open Access Copy Link to Item
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Chakraborty, Mukta, Solveig Walløe, Signe Nedergaard, Emma E. Fridel, Torben Dabelsteen, Bente Pakkenberg, Mads F. Bertelsen, et al. “Core and Shell Song Systems Unique to the Parrot Brain.” Plos One 10, no. 6 (2015): e0118496. https://doi.org/10.1371/journal.pone.0118496.Full Text Open Access Copy Link to Item
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Haug-Baltzell, Asher, Erich D. Jarvis, Fiona M. McCarthy, and Eric Lyons. “Identification of dopamine receptors across the extant avian family tree and analysis with other clades uncovers a polyploid expansion among vertebrates.” Front Neurosci 9 (2015): 361. https://doi.org/10.3389/fnins.2015.00361.Full Text Open Access Copy Link to Item
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Jarvis, Erich D., Siavash Mirarab, Andre J. Aberer, Bo Li, Peter Houde, Cai Li, Simon Y. W. Ho, et al. “Phylogenomic analyses data of the avian phylogenomics project.” Gigascience 4 (2015): 4. https://doi.org/10.1186/s13742-014-0038-1.Full Text Open Access Copy Link to Item
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Koepfli, Klaus-Peter, Benedict Paten, Benedict Genome 10K Community of Scientists, and Stephen J. O’Brien. “The Genome 10K Project: a way forward.” Annu Rev Anim Biosci 3 (2015): 57–111. https://doi.org/10.1146/annurev-animal-090414-014900.Full Text Link to Item
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Wirthlin, Morgan, Peter V. Lovell, Erich D. Jarvis, and Claudio V. Mello. “Comparative genomics reveals molecular features unique to the songbird lineage.” Bmc Genomics 15, no. 1 (December 13, 2014): 1082. https://doi.org/10.1186/1471-2164-15-1082.Full Text Open Access Copy Link to Item
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Green, Richard E., Edward L. Braun, Joel Armstrong, Dent Earl, Ngan Nguyen, Glenn Hickey, Michael W. Vandewege, et al. “Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs.” Science 346, no. 6215 (December 12, 2014): 1254449. https://doi.org/10.1126/science.1254449.Full Text Open Access Copy Link to Item
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Greenwold, Matthew J., Weier Bao, Erich D. Jarvis, Haofu Hu, Cai Li, M Thomas P. Gilbert, Guojie Zhang, and Roger H. Sawyer. “Dynamic evolution of the alpha (α) and beta (β) keratins has accompanied integument diversification and the adaptation of birds into novel lifestyles.” Bmc Evol Biol 14 (December 12, 2014): 249. https://doi.org/10.1186/s12862-014-0249-1.Full Text Open Access Copy Link to Item
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Whitney, Osceola, Andreas R. Pfenning, Jason T. Howard, Charles A. Blatti, Fang Liu, James M. Ward, Rui Wang, et al. “Core and region-enriched networks of behaviorally regulated genes and the singing genome.” Science 346, no. 6215 (December 12, 2014): 1256780. https://doi.org/10.1126/science.1256780.Full Text Open Access Copy Link to Item
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Zhou, Qi, Jilin Zhang, Doris Bachtrog, Na An, Quanfei Huang, Erich D. Jarvis, M Thomas P. Gilbert, and Guojie Zhang. “Complex evolutionary trajectories of sex chromosomes across bird taxa.” Science 346, no. 6215 (December 12, 2014): 1246338. https://doi.org/10.1126/science.1246338.Full Text Open Access Copy Link to Item
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Callicrate, Taylor, Rebecca Dikow, James W. Thomas, James C. Mullikin, Erich D. Jarvis, Robert C. Fleischer, and Robert C. NISC Comparative Sequencing Program. “Genomic resources for the endangered Hawaiian honeycreepers.” Bmc Genomics 15, no. 1 (December 12, 2014): 1098. https://doi.org/10.1186/1471-2164-15-1098.Full Text Open Access Copy Link to Item
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Jarvis, Erich D., Siavash Mirarab, Andre J. Aberer, Bo Li, Peter Houde, Cai Li, Simon Y. W. Ho, et al. “Whole-genome analyses resolve early branches in the tree of life of modern birds.” Science 346, no. 6215 (December 12, 2014): 1320–31. https://doi.org/10.1126/science.1253451.Full Text Open Access Copy Link to Item
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Meredith, Robert W., Guojie Zhang, M Thomas P. Gilbert, Erich D. Jarvis, and Mark S. Springer. “Evidence for a single loss of mineralized teeth in the common avian ancestor.” Science 346, no. 6215 (December 12, 2014): 1254390. https://doi.org/10.1126/science.1254390.Full Text Open Access Copy Link to Item
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Pfenning, Andreas R., Erina Hara, Osceola Whitney, Miriam V. Rivas, Rui Wang, Petra L. Roulhac, Jason T. Howard, et al. “Convergent transcriptional specializations in the brains of humans and song-learning birds.” Science 346, no. 6215 (December 12, 2014): 1256846. https://doi.org/10.1126/science.1256846.Full Text Open Access Copy Link to Item
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Zhang, Guojie, Cai Li, Qiye Li, Bo Li, Denis M. Larkin, Chul Lee, Jay F. Storz, et al. “Comparative genomics reveals insights into avian genome evolution and adaptation.” Science 346, no. 6215 (December 12, 2014): 1311–20. https://doi.org/10.1126/science.1251385.Full Text Open Access Copy Link to Item
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Zhang, Guojie, Erich D. Jarvis, and M Thomas P. Gilbert. “Avian genomes. A flock of genomes. Introduction.” Science 346, no. 6215 (December 12, 2014): 1308–9. https://doi.org/10.1126/science.2014.346.6215.346_1308.Full Text Open Access Copy Link to Item
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Romanov, Michael N., Marta Farré, Pamela E. Lithgow, Katie E. Fowler, Benjamin M. Skinner, Rebecca O’Connor, Gothami Fonseka, et al. “Reconstruction of gross avian genome structure, organization and evolution suggests that the chicken lineage most closely resembles the dinosaur avian ancestor.” Bmc Genomics 15, no. 1 (December 11, 2014): 1060. https://doi.org/10.1186/1471-2164-15-1060.Full Text Open Access Copy Link to Item
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Petkov, Christopher I., and Erich D. Jarvis. “The basal ganglia within a cognitive system in birds and mammals.” Behav Brain Sci 37, no. 6 (December 2014): 568–69. https://doi.org/10.1017/S0140525X13004160.Full Text Link to Item
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Kubikova, Lubica, Eva Bosikova, Martina Cvikova, Kristina Lukacova, Constance Scharff, and Erich D. Jarvis. “Basal ganglia function, stuttering, sequencing, and repair in adult songbirds.” Sci Rep 4 (October 13, 2014): 6590. https://doi.org/10.1038/srep06590.Full Text Open Access Copy Link to Item
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Striedter, Georg F., T Grant Belgard, Chun-Chun Chen, Fred P. Davis, Barbara L. Finlay, Onur Güntürkün, Melina E. Hale, et al. “NSF workshop report: discovering general principles of nervous system organization by comparing brain maps across species.” J Comp Neurol 522, no. 7 (May 1, 2014): 1445–53. https://doi.org/10.1002/cne.23568.Full Text Open Access Copy Link to Item
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Dai, Rui, Ricardo Rossello, Chun-Chun Chen, Joeran Kessler, Ian Davison, Ute Hochgeschwender, and Erich D. Jarvis. “Maintenance and neuronal differentiation of chicken induced pluripotent stem-like cells.” Stem Cells Int 2014 (2014): 182737. https://doi.org/10.1155/2014/182737.Full Text Open Access Copy Link to Item
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Li, Cai, Yong Zhang, Jianwen Li, Lesheng Kong, Haofu Hu, Hailin Pan, Luohao Xu, et al. “Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment.” Gigascience 3, no. 1 (2014): 27. https://doi.org/10.1186/2047-217X-3-27.Full Text Open Access Copy Link to Item
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Li, Shengbin, Bo Li, Cheng Cheng, Zijun Xiong, Qingbo Liu, Jianghua Lai, Hannah V. Carey, et al. “Genomic signatures of near-extinction and rebirth of the crested ibis and other endangered bird species.” Genome Biol 15, no. 12 (2014): 557. https://doi.org/10.1186/s13059-014-0557-1.Full Text Open Access Copy Link to Item
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Pereira, Joana, Warren E. Johnson, Stephen J. O’Brien, Erich D. Jarvis, Guojie Zhang, M Thomas P. Gilbert, Vitor Vasconcelos, and Agostinho Antunes. “Evolutionary genomics and adaptive evolution of the Hedgehog gene family (Shh, Ihh and Dhh) in vertebrates.” Plos One 9, no. 12 (2014): e74132. https://doi.org/10.1371/journal.pone.0074132.Full Text Open Access Copy Link to Item
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Striedter, Georg F., T Grant Belgard, Chun-Chun Chen, Fred P. Davis, Barbara L. Finlay, Onur Güntürkün, Melina E. Hale, et al. “NSF workshop report: discovering general principles of nervous system organization by comparing brain maps across species.” Brain Behav Evol 83, no. 1 (2014): 1–8. https://doi.org/10.1159/000360152.Full Text Open Access Copy Link to Item
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Cui, Jie, Wei Zhao, Zhiyong Huang, Erich D. Jarvis, M Thomas P. Gilbert, Peter J. Walker, Edward C. Holmes, and Guojie Zhang. “Low frequency of paleoviral infiltration across the avian phylogeny.” Genome Biol 15, no. 12 (2014): 539. https://doi.org/10.1186/s13059-014-0539-3.Full Text Open Access Copy Link to Item
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Ganapathy, Ganeshkumar, Jason T. Howard, James M. Ward, Jianwen Li, Bo Li, Yingrui Li, Yingqi Xiong, et al. “High-coverage sequencing and annotated assemblies of the budgerigar genome.” Gigascience 3 (2014): 11. https://doi.org/10.1186/2047-217X-3-11.Full Text Open Access Copy Link to Item
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Weber, Claudia C., Bastien Boussau, Jonathan Romiguier, Erich D. Jarvis, and Hans Ellegren. “Evidence for GC-biased gene conversion as a driver of between-lineage differences in avian base composition.” Genome Biol 15, no. 12 (2014): 549. https://doi.org/10.1186/s13059-014-0549-1.Full Text Open Access Copy Link to Item
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Jarvis, E. D., J. Yu, M. V. Rivas, H. Horita, G. Feenders, O. Whitney, S. C. Jarvis, et al. “Global view of the functional molecular organization of the avian cerebrum: mirror images and functional columns.” J Comp Neurol 521, no. 16 (November 2013): Spc1. https://doi.org/10.1002/cne.23462.Full Text Link to Item
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Smulders, Tom V., and Erich D. Jarvis. “Different mechanisms are responsible for dishabituation of electrophysiological auditory responses to a change in acoustic identity than to a change in stimulus location.” Neurobiol Learn Mem 106 (November 2013): 163–76. https://doi.org/10.1016/j.nlm.2013.08.010.Full Text Open Access Copy Link to Item
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Chen, Chun-Chun, Candace M. Winkler, Andreas R. Pfenning, and Erich D. Jarvis. “Molecular profiling of the developing avian telencephalon: regional timing and brain subdivision continuities.” J Comp Neurol 521, no. 16 (November 2013): 3666–3701. https://doi.org/10.1002/cne.23406.Full Text Open Access Copy Link to Item
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Jarvis, Erich D., Jing Yu, Miriam V. Rivas, Haruhito Horita, Gesa Feenders, Osceola Whitney, Syrus C. Jarvis, et al. “Global view of the functional molecular organization of the avian cerebrum: mirror images and functional columns.” J Comp Neurol 521, no. 16 (November 2013): 3614–65. https://doi.org/10.1002/cne.23404.Full Text Open Access Copy Link to Item
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Rosselló, Ricardo Antonio, Chun-Chun Chen, Rui Dai, Jason T. Howard, Ute Hochgeschwender, and Erich D. Jarvis. “Mammalian genes induce partially reprogrammed pluripotent stem cells in non-mammalian vertebrate and invertebrate species.” Elife 2 (September 3, 2013): e00036. https://doi.org/10.7554/eLife.00036.Full Text Open Access Copy Link to Item
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Bradnam, Keith R., Joseph N. Fass, Anton Alexandrov, Paul Baranay, Michael Bechner, Inanç Birol, Sébastien Boisvert, et al. “Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.” Gigascience 2, no. 1 (July 22, 2013): 10. https://doi.org/10.1186/2047-217X-2-10.Full Text Open Access Copy Link to Item
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Parchman, T. L., Z. Gompert, M. J. Braun, R. T. Brumfield, D. B. McDonald, J. A. C. Uy, G. Zhang, E. D. Jarvis, B. A. Schlinger, and C. A. Buerkle. “The genomic consequences of adaptive divergence and reproductive isolation between species of manakins.” Mol Ecol 22, no. 12 (June 2013): 3304–17. https://doi.org/10.1111/mec.12201.Full Text Open Access Copy Link to Item
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Arriaga, Gustavo, and Erich D. Jarvis. “Mouse vocal communication system: are ultrasounds learned or innate?” Brain Lang 124, no. 1 (January 2013): 96–116. https://doi.org/10.1016/j.bandl.2012.10.002.Full Text Open Access Copy Link to Item
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Liu, Wan-chun, Kazuhiro Wada, Erich D. Jarvis, and Fernando Nottebohm. “Rudimentary substrates for vocal learning in a suboscine.” Nat Commun 4 (2013): 2082. https://doi.org/10.1038/ncomms3082.Full Text Open Access Copy Link to Item
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Petkov, C. I., and E. D. Jarvis. “Birds, primates, and spoken language origins: Behavioral phenotypes and neurobiological substrates.” Frontiers in Evolutionary Neuroscience 4, no. AUG (December 1, 2012). https://doi.org/10.3389/fnevo.2012.00012.Full Text Open Access Copy
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Simonyan, Kristina, Barry Horwitz, and Erich D. Jarvis. “Dopamine regulation of human speech and bird song: a critical review.” Brain Lang 122, no. 3 (September 2012): 142–50. https://doi.org/10.1016/j.bandl.2011.12.009.Full Text Open Access Copy Link to Item
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Koren, Sergey, Michael C. Schatz, Brian P. Walenz, Jeffrey Martin, Jason T. Howard, Ganeshkumar Ganapathy, Zhong Wang, et al. “Hybrid error correction and de novo assembly of single-molecule sequencing reads.” Nat Biotechnol 30, no. 7 (July 1, 2012): 693–700. https://doi.org/10.1038/nbt.2280.Full Text Open Access Copy Link to Item
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Chen, C. C., K. Wada, and E. D. Jarvis. “Radioactive in situ hybridization for detecting diverse gene expression patterns in tissue.” Journal of Visualized Experiments, no. 62 (April 27, 2012). https://doi.org/10.3791/3764.Full Text
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Chen, Chun-Chun, Kazuhiro Wada, and Erich D. Jarvis. “Radioactive in situ hybridization for detecting diverse gene expression patterns in tissue.” J Vis Exp, no. 62 (April 27, 2012). https://doi.org/10.3791/3764.Full Text Open Access Copy Link to Item
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St John, John A., Edward L. Braun, Sally R. Isberg, Lee G. Miles, Amanda Y. Chong, Jaime Gongora, Pauline Dalzell, et al. “Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes.” Genome Biol 13, no. 1 (January 31, 2012): 415. https://doi.org/10.1186/gb-2012-13-1-415.Full Text Open Access Copy Link to Item
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Arriaga, Gustavo, Eric P. Zhou, and Erich D. Jarvis. “Of mice, birds, and men: the mouse ultrasonic song system has some features similar to humans and song-learning birds.” Plos One 7, no. 10 (2012): e46610. https://doi.org/10.1371/journal.pone.0046610.Full Text Open Access Copy Link to Item
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Chen, Chun-Chun, Evan Balaban, and Erich D. Jarvis. “Interspecies avian brain chimeras reveal that large brain size differences are influenced by cell-interdependent processes.” Plos One 7, no. 7 (2012): e42477. https://doi.org/10.1371/journal.pone.0042477.Full Text Open Access Copy Link to Item
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Hara, Erina, Miriam V. Rivas, James M. Ward, Kazuo Okanoya, and Erich D. Jarvis. “Convergent differential regulation of parvalbumin in the brains of vocal learners.” Plos One 7, no. 1 (2012): e29457. https://doi.org/10.1371/journal.pone.0029457.Full Text Open Access Copy Link to Item
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Horita, Haruhito, Masahiko Kobayashi, Wan-Chun Liu, Kotaro Oka, Erich D. Jarvis, and Kazuhiro Wada. “Specialized motor-driven dusp1 expression in the song systems of multiple lineages of vocal learning birds.” Plos One 7, no. 8 (2012): e42173. https://doi.org/10.1371/journal.pone.0042173.Full Text Open Access Copy Link to Item
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Nabholz, Benoit, Axel Künstner, Rui Wang, Erich D. Jarvis, and Hans Ellegren. “Dynamic evolution of base composition: causes and consequences in avian phylogenomics.” Mol Biol Evol 28, no. 8 (August 2011): 2197–2210. https://doi.org/10.1093/molbev/msr047.Full Text Open Access Copy Link to Item
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KÜnstner, A., J. B. W. Wolf, N. BackstrÖm, O. Whitney, C. N. Balakrishnan, L. Day, S. V. Edwards, et al. “Comparative genomics based on massive paralle transcriptome sequencing reveals patterns of substitution and selection across 10 bird species (Molecular Ecology (2010) 19:SUPPL.1 (266-276)).” Molecular Ecology 20, no. 13 (July 1, 2011): 2871. https://doi.org/10.1111/j.1365-294X.2011.05169.x.Full Text
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Roulhac, Petra L., James M. Ward, J Will Thompson, Erik J. Soderblom, Michael Silva, M Arthur Moseley, and Erich D. Jarvis. “Microproteomics: quantitative proteomic profiling of small numbers of laser-captured cells.” Cold Spring Harb Protoc 2011, no. 2 (February 1, 2011): pdb.prot5573. https://doi.org/10.1101/pdb.prot5573.Full Text Open Access Copy Link to Item
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Robinson, G. E., J. A. Banks, D. K. Padilla, W. W. Burggren, C. S. Cohen, C. F. Delwiche, V. Funk, et al. “Empowering 21st century biology.” Bioscience 60, no. 11 (December 1, 2010): 923–30. https://doi.org/10.1525/bio.2010.60.11.8.Full Text Open Access Copy
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Nabholz, Benoit, Erich D. Jarvis, and Hans Ellegren. “Obtaining mtDNA genomes from next-generation transcriptome sequencing: a case study on the basal Passerida (Aves: Passeriformes) phylogeny.” Mol Phylogenet Evol 57, no. 1 (October 2010): 466–70. https://doi.org/10.1016/j.ympev.2010.06.009.Full Text Open Access Copy Link to Item
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Zapka, Manuela, Dominik Heyers, Miriam Liedvogel, Erich D. Jarvis, and Henrik Mouritsen. “Night-time neuronal activation of Cluster N in a day- and night-migrating songbird.” Eur J Neurosci 32, no. 4 (August 2010): 619–24. https://doi.org/10.1111/j.1460-9568.2010.07311.x.Full Text Open Access Copy Link to Item
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Horita, Haruhito, Kazuhiro Wada, Miriam V. Rivas, Erina Hara, and Erich D. Jarvis. “The dusp1 immediate early gene is regulated by natural stimuli predominantly in sensory input neurons.” J Comp Neurol 518, no. 14 (July 15, 2010): 2873–2901. https://doi.org/10.1002/cne.22370.Full Text Open Access Copy Link to Item
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Warren, Wesley C., David F. Clayton, Hans Ellegren, Arthur P. Arnold, Ladeana W. Hillier, Axel Künstner, Steve Searle, et al. “The genome of a songbird.” Nature 464, no. 7289 (April 1, 2010): 757–62. https://doi.org/10.1038/nature08819.Full Text Open Access Copy Link to Item
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Kubikova, Lubica, Kazuhiro Wada, and Erich D. Jarvis. “Dopamine receptors in a songbird brain.” J Comp Neurol 518, no. 6 (March 15, 2010): 741–69. https://doi.org/10.1002/cne.22255.Full Text Open Access Copy Link to Item
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Künstner, Axel, Jochen B. W. Wolf, Niclas Backström, Osceola Whitney, Christopher N. Balakrishnan, Lainy Day, Scott V. Edwards, et al. “Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species.” Mol Ecol 19 Suppl 1, no. Suppl 1 (March 2010): 266–76. https://doi.org/10.1111/j.1365-294X.2009.04487.x.Full Text Open Access Copy Link to Item
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Hara, Erina, Lubica Kubikova, Neal A. Hessler, and Erich D. Jarvis. “Assessing visual requirements for social context-dependent activation of the songbird song system.” Proc Biol Sci 276, no. 1655 (January 22, 2009): 279–89. https://doi.org/10.1098/rspb.2008.1138.Full Text Open Access Copy Link to Item
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Jarvis, E. D. “Bird song systems: Evolution,” January 1, 2009, 217–25. https://doi.org/10.1016/B978-008045046-9.00935-9.Full Text Open Access Copy
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Jarvis, E. D. “Bird Brain: Evolution,” January 1, 2009, 209–15. https://doi.org/10.1016/B978-008045046-9.00934-7.Full Text Open Access Copy
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Horita, Haruhito, Kazuhiro Wada, and Erich D. Jarvis. “Early onset of deafening-induced song deterioration and differential requirements of the pallial-basal ganglia vocal pathway.” Eur J Neurosci 28, no. 12 (December 2008): 2519–32. https://doi.org/10.1111/j.1460-9568.2008.06535.x.Full Text Open Access Copy Link to Item
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Feenders, Gesa, Miriam Liedvogel, Miriam Rivas, Manuela Zapka, Haruhito Horita, Erina Hara, Kazuhiro Wada, Henrik Mouritsen, and Erich D. Jarvis. “Molecular mapping of movement-associated areas in the avian brain: a motor theory for vocal learning origin.” Plos One 3, no. 3 (March 12, 2008): e1768. https://doi.org/10.1371/journal.pone.0001768.Full Text Open Access Copy Link to Item
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Pinaud, Raphael, Cristina Osorio, Oscar Alzate, and Erich D. Jarvis. “Profiling of experience-regulated proteins in the songbird auditory forebrain using quantitative proteomics.” Eur J Neurosci 27, no. 6 (March 2008): 1409–22. https://doi.org/10.1111/j.1460-9568.2008.06102.x.Full Text Open Access Copy Link to Item
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Jarvis, Erich D. “Neural systems for vocal learning in birds and humans: a synopsis.” J Ornithol 148, no. 1 (December 1, 2007): 35–44. https://doi.org/10.1007/s10336-007-0243-0.Full Text Open Access Copy Link to Item
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Hara, Erina, Lubica Kubikova, Neal A. Hessler, and Erich D. Jarvis. “Role of the midbrain dopaminergic system in modulation of vocal brain activation by social context.” Eur J Neurosci 25, no. 11 (June 2007): 3406–16. https://doi.org/10.1111/j.1460-9568.2007.05600.x.Full Text Open Access Copy Link to Item
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Kubikova, Lubica, Elena A. Turner, and Erich D. Jarvis. “The pallial basal ganglia pathway modulates the behaviorally driven gene expression of the motor pathway.” Eur J Neurosci 25, no. 7 (April 2007): 2145–60. https://doi.org/10.1111/j.1460-9568.2007.05368.x.Full Text Open Access Copy Link to Item
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Liedvogel, Miriam, Gesa Feenders, Kazuhiro Wada, Nikolaus F. Troje, Erich D. Jarvis, and Henrik Mouritsen. “Lateralized activation of Cluster N in the brains of migratory songbirds.” Eur J Neurosci 25, no. 4 (February 2007): 1166–73. https://doi.org/10.1111/j.1460-9568.2007.05350.x.Full Text Open Access Copy Link to Item
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Jarvis, E. D. “The evolution of vocal learning systems in birds and humans” 2 (January 1, 2007): 213–27. https://doi.org/10.1016/B0-12-370878-8/00136-1.Full Text
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Inoue, Kazuhiko, Masaki Kato, Kazuo Okanoya, Hironobu Sakaguchi, Kazuhiro Wada, Erich D. Jarvis, and Kazuyoshi Tsutsui. “Sex-dependent expression of PEP-19 in the song nucleus during brain development in zebra finches.” Zoological Science 23, no. 12 (December 1, 2006): 1215–1215.Link to Item
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Smith, V Anne, Jing Yu, Tom V. Smulders, Alexander J. Hartemink, and Erich D. Jarvis. “Computational inference of neural information flow networks.” Plos Comput Biol 2, no. 11 (November 24, 2006): e161. https://doi.org/10.1371/journal.pcbi.0020161.Full Text Open Access Copy Link to Item
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Wada, K., J. T. Howard, P. McConnell, O. Whitney, T. Lints, M. V. Rivas, H. Horita, et al. “Erratum: A molecular neuroethological approach for identifying and characterizing a cascade of behaviorally regulated genes (Proceedings of the National Academy of Sciences of the United States of America (October 10, 2006) 41, 103 (15212-15217) DOI 10.1073/pnas.0607098103).” Proceedings of the National Academy of Sciences of the United States of America 103, no. 45 (November 7, 2006): 17064. https://doi.org/10.1073/pnas.0608997103.Full Text
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Wada, Kazuhiro, Jason T. Howard, Patrick McConnell, Osceola Whitney, Thierry Lints, Miriam V. Rivas, Haruhito Horita, et al. “A molecular neuroethological approach for identifying and characterizing a cascade of behaviorally regulated genes.” Proc Natl Acad Sci U S A 103, no. 41 (October 10, 2006): 15212–17. https://doi.org/10.1073/pnas.0607098103.Full Text Open Access Copy Link to Item
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Ferreira, Adriana R. J., Tom V. Smulders, Koichi Sameshima, Claudio V. Mello, and Erich D. Jarvis. “VOCALIZATIONS AND ASSOCIATED BEHAVIORS OF THE SOMBRE HUMMINGBIRD (APHANTOCHROA CIRRHOCHLORIS) AND THE RUFOUS-BREASTED HERMIT (GLAUCIS HIRSUTUS).” Auk 123, no. 4 (October 2006): 1129–48. https://doi.org/10.1642/0004-8038(2006)123[1129:vaabot]2.0.co;2.Full Text Open Access Copy Link to Item
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Sasaki, Aya, Tatyana D. Sotnikova, Raul R. Gainetdinov, and Erich D. Jarvis. “Social context-dependent singing-regulated dopamine.” J Neurosci 26, no. 35 (August 30, 2006): 9010–14. https://doi.org/10.1523/JNEUROSCI.1335-06.2006.Full Text Open Access Copy Link to Item
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Jarvis, E. D. “Selection for and against vocal learning in birds and mammals.” Ornithological Science 5, no. 1 (January 1, 2006): 5–14. https://doi.org/10.2326/osj.5.5.Full Text
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Burmeister, S. S., E. D. Jarvis, and R. D. Fernald. “Rapid behavioral and genomic responses to social opportunity.” Plos Biology. 3, no. 11 (November 1, 2005).Open Access Copy
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Burmeister, Sabrina S., Erich D. Jarvis, and Russell D. Fernald. “Rapid behavioral and genomic responses to social opportunity.” Plos Biol 3, no. 11 (November 2005): e363. https://doi.org/10.1371/journal.pbio.0030363.Full Text Link to Item
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Mouritsen, Henrik, Gesa Feenders, Miriam Liedvogel, Kazuhiro Wada, and Erich D. Jarvis. “Night-vision brain area in migratory songbirds.” Proc Natl Acad Sci U S A 102, no. 23 (June 7, 2005): 8339–44. https://doi.org/10.1073/pnas.0409575102.Full Text Open Access Copy Link to Item
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Jarvis, Erich D., Onur Güntürkün, Laura Bruce, András Csillag, Harvey Karten, Wayne Kuenzel, Loreta Medina, et al. “Avian brains and a new understanding of vertebrate brain evolution.” Nat Rev Neurosci 6, no. 2 (February 2005): 151–59. https://doi.org/10.1038/nrn1606.Full Text Open Access Copy Link to Item
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Yu, Jing, V Anne Smith, Paul P. Wang, Alexander J. Hartemink, and Erich D. Jarvis. “Advances to Bayesian network inference for generating causal networks from observational biological data.” Bioinformatics 20, no. 18 (December 12, 2004): 3594–3603. https://doi.org/10.1093/bioinformatics/bth448.Full Text Open Access Copy Link to Item
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Wada, Kazuhiro, Hironobu Sakaguchi, Erich D. Jarvis, and Masatoshi Hagiwara. “Differential expression of glutamate receptors in avian neural pathways for learned vocalization.” J Comp Neurol 476, no. 1 (August 9, 2004): 44–64. https://doi.org/10.1002/cne.20201.Full Text Open Access Copy Link to Item
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Reiner, A., D. J. Perkel, L. L. Bruce, A. B. Butler, A. Csillag, W. Kuenzel, L. Medina, et al. “Erratum: Revised nomenclature for avian telencephalon and some related brainstem nuclei (Journal of Comparative Neurology (2004) 473 (377-414)).” Journal of Comparative Neurology 475, no. 2 (July 19, 2004): 288.
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Reiner, Anton, David J. Perkel, Claudio V. Mello, and Erich D. Jarvis. “Songbirds and the revised avian brain nomenclature.” Ann N Y Acad Sci 1016 (June 2004): 77–108. https://doi.org/10.1196/annals.1298.013.Full Text Open Access Copy Link to Item
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Jarvis, Erich D. “Learned birdsong and the neurobiology of human language.” Ann N Y Acad Sci 1016 (June 2004): 749–77. https://doi.org/10.1196/annals.1298.038.Full Text Open Access Copy Link to Item
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Reiner, Anton, David J. Perkel, Laura L. Bruce, Ann B. Butler, András Csillag, Wayne Kuenzel, Loreta Medina, et al. “Revised nomenclature for avian telencephalon and some related brainstem nuclei.” J Comp Neurol 473, no. 3 (May 31, 2004): 377–414. https://doi.org/10.1002/cne.20118.Full Text Open Access Copy Link to Item
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Haesler, Sebastian, Kazuhiro Wada, A. Nshdejan, Edward E. Morrisey, Thierry Lints, Eric D. Jarvis, and Constance Scharff. “FoxP2 expression in avian vocal learners and non-learners.” J Neurosci 24, no. 13 (March 31, 2004): 3164–75. https://doi.org/10.1523/JNEUROSCI.4369-03.2004.Full Text Open Access Copy Link to Item
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Jarvis, E. D. “Brains and birdsong,” January 1, 2004, 226–71. https://doi.org/10.1016/B978-012473070-0/50011-6.Full Text Open Access Copy
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Gustincich, Stefano, Serge Batalov, Kirk W. Beisel, Hidemasa Bono, Piero Carninci, Colin F. Fletcher, Sean Grimmond, et al. “Analysis of the mouse transcriptome for genes involved in the function of the nervous system.” Genome Res 13, no. 6B (June 2003): 1395–1401. https://doi.org/10.1101/gr.1135303.Full Text Open Access Copy Link to Item
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Ribeiro, Sidarta, Claudio V. Mello, Tarciso Velho, Timothy J. Gardner, Erich D. Jarvis, and Constantine Pavlides. “Induction of hippocampal long-term potentiation during waking leads to increased extrahippocampal zif-268 expression during ensuing rapid-eye-movement sleep.” J Neurosci 22, no. 24 (December 15, 2002): 10914–23. https://doi.org/10.1523/JNEUROSCI.22-24-10914.2002.Full Text Open Access Copy Link to Item
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Okazaki, Y., M. Furuno, T. Kasukawa, J. Adachi, H. Bono, S. Kondo, I. Nikaido, et al. “Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.” Nature 420, no. 6915 (December 5, 2002): 563–73. https://doi.org/10.1038/nature01266.Full Text Open Access Copy Link to Item
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Jarvis, E. D., V. A. Smith, K. Wada, M. V. Rivas, M. McElroy, T. V. Smulders, P. Carninci, et al. “A framework for integrating the songbird brain.” J Comp Physiol a Neuroethol Sens Neural Behav Physiol 188, no. 11–12 (December 2002): 961–80. https://doi.org/10.1007/s00359-002-0358-y.Full Text Open Access Copy Link to Item
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Smith, V Anne, Erich D. Jarvis, and Alexander J. Hartemink. “Evaluating functional network inference using simulations of complex biological systems.” Bioinformatics 18 Suppl 1 (2002): S216–24. https://doi.org/10.1093/bioinformatics/18.suppl_1.s216.Full Text Open Access Copy Link to Item
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Jarvis, E. “The importance of anatomical substrates.” Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technolgoy, Cbgist 2001, December 1, 2001, 5.
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Krebs, C. J., E. D. Jarvis, J. Chan, J. P. Lydon, S. Ogawa, and D. W. Pfaff. “A membrane-associated progesterone-binding protein, 25-Dx, is regulated by progesterone in brain regions involved in female reproductive behaviors.” Proc Natl Acad Sci U S A 97, no. 23 (November 7, 2000): 12816–21. https://doi.org/10.1073/pnas.97.23.12816.Full Text Open Access Copy Link to Item
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Jarvis, E. D., S. Ribeiro, M. L. da Silva, D. Ventura, J. Vielliard, and C. V. Mello. “Behaviourally driven gene expression reveals song nuclei in hummingbird brain.” Nature 406, no. 6796 (August 10, 2000): 628–32. https://doi.org/10.1038/35020570.Full Text Open Access Copy Link to Item
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Denisenko-Nehrbass, N. I., E. Jarvis, C. Scharff, F. Nottebohm, and C. V. Mello. “Site-specific retinoic acid production in the brain of adult songbirds.” Neuron 27, no. 2 (August 2000): 359–70. https://doi.org/10.1016/s0896-6273(00)00043-x.Full Text Open Access Copy Link to Item
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Li, X. C., E. D. Jarvis, B. Alvarez-Borda, D. A. Lim, and F. Nottebohm. “A relationship between behavior, neurotrophin expression, and new neuron survival.” Proc Natl Acad Sci U S A 97, no. 15 (July 18, 2000): 8584–89. https://doi.org/10.1073/pnas.140222497.Full Text Open Access Copy Link to Item
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Jarvis, E. D., and C. V. Mello. “Molecular mapping of brain areas involved in parrot vocal communication.” J Comp Neurol 419, no. 1 (March 27, 2000): 1–31. https://doi.org/10.1002/(sici)1096-9861(20000327)419:1<1::aid-cne1>3.0.co;2-m.Full Text Open Access Copy Link to Item
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Mello, I. V., and E. D. Jarvis. “Chapter 2.2.2 Applying differential display to brain research.” Techniques in the Behavioral and Neural Sciences 13, no. C (December 1, 1999): 200–211. https://doi.org/10.1016/S0921-0709(99)80019-4.Full Text
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Rudner, R., E. D. Jarvis, L. Adepoju, and R. Socher. “Cooperative colonial patterning in the genus B acillus.” Faseb Journal 13, no. 7 (April 23, 1999): A1543–A1543.Link to Item
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Rudner, R., and E. D. Jarvis. “Response to Matsuyama and Matsushita's MicroCorrespondence regarding our paper 'Classification and genetic characterization of pattern-forming bacilli' mol microbiol (1998) 27: 687-703 Response to Matsuyama and Matsushita's MicroCorrespondence regarding our paper 'Classification and genetic characterization of pattern-forming bacilli' Mol Microbiol (1998) 27: 687-703 [4].” Molecular Microbiology 31, no. 4 (February 24, 1999): 1279–81. https://doi.org/10.1046/j.1365-2958.1999.01259.x.Full Text
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Krebs, C. J., E. D. Jarvis, and D. W. Pfaff. “The 70-kDa heat shock cognate protein (Hsc73) gene is enhanced by ovarian hormones in the ventromedial hypothalamus.” Proc Natl Acad Sci U S A 96, no. 4 (February 16, 1999): 1686–91. https://doi.org/10.1073/pnas.96.4.1686.Full Text Open Access Copy Link to Item
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Jarvis, E. D., C. Scharff, M. R. Grossman, J. A. Ramos, and F. Nottebohm. “For whom the bird sings: context-dependent gene expression.” Neuron 21, no. 4 (October 1998): 775–88. https://doi.org/10.1016/s0896-6273(00)80594-2.Full Text Open Access Copy Link to Item
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Rudner, R., O. Martsinkevich, W. Leung, and E. D. Jarvis. “Classification and genetic characterization of pattern-forming Bacilli.” Mol Microbiol 27, no. 4 (February 1998): 687–703. https://doi.org/10.1046/j.1365-2958.1998.00717.x.Full Text Open Access Copy Link to Item
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Holzenberger, M., E. D. Jarvis, C. Chong, M. Grossman, F. Nottebohm, and C. Scharff. “Selective expression of insulin-like growth factor II in the songbird brain.” J Neurosci 17, no. 18 (September 15, 1997): 6974–87. https://doi.org/10.1523/JNEUROSCI.17-18-06974.1997.Full Text Open Access Copy Link to Item
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Jarvis, E. D., H. Schwabl, S. Ribeiro, and C. V. Mello. “Brain gene regulation by territorial singing behavior in freely ranging songbirds.” Neuroreport 8, no. 8 (May 27, 1997): 2073–77. https://doi.org/10.1097/00001756-199705260-00052.Full Text Open Access Copy Link to Item
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Jarvis, E. D., and F. Nottebohm. “Motor-driven gene expression.” Proc Natl Acad Sci U S A 94, no. 8 (April 15, 1997): 4097–4102. https://doi.org/10.1073/pnas.94.8.4097.Full Text Open Access Copy Link to Item
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Rivas, M. V., E. D. Jarvis, S. Morisaki, H. Carbonaro, A. B. Gottlieb, and J. G. Krueger. “Identification of aberrantly regulated genes in diseased skin using the cDNA differential display technique.” J Invest Dermatol 108, no. 2 (February 1997): 188–94. https://doi.org/10.1111/1523-1747.ep12334217.Full Text Link to Item
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Mello, C. V., E. D. Jarvis, N. Denisenko, and M. Rivas. “Isolation of song-regulated genes in the brain of songbirds.” Methods Mol Biol 85 (1997): 205–17. https://doi.org/10.1385/0-89603-489-5:205.Full Text Link to Item
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Chew, S. J., C. Mello, F. Nottebohm, E. Jarvis, and D. S. Vicario. “Decrements in auditory responses to a repeated conspecific song are long-lasting and require two periods of protein synthesis in the songbird forebrain.” Proc Natl Acad Sci U S A 92, no. 8 (April 11, 1995): 3406–10. https://doi.org/10.1073/pnas.92.8.3406.Full Text Link to Item
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Jarvis, E. D., C. V. Mello, and F. Nottebohm. “Associative learning and stimulus novelty influence the song-induced expression of an immediate early gene in the canary forebrain.” Learn Mem 2, no. 2 (1995): 62–80. https://doi.org/10.1101/lm.2.2.62.Full Text Link to Item
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Rudner, R., B. Studamire, and E. D. Jarvis. “Determinations of restriction fragment length polymorphism in bacteria using ribosomal RNA genes.” Methods Enzymol 235 (1994): 184–96. https://doi.org/10.1016/0076-6879(94)35140-6.Full Text Link to Item
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Rudner, R., A. Chevrestt, S. R. Buchholz, B. Studamire, A. M. White, and E. D. Jarvis. “Two tRNA gene clusters associated with rRNA operons rrnD and rrnE in Bacillus subtilis.” J Bacteriol 175, no. 2 (January 1993): 503–9. https://doi.org/10.1128/jb.175.2.503-509.1993.Full Text Link to Item
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Jarvis, E. D., S. Cheng, and R. Rudner. “Genetic structure and DNA sequences at junctions involved in the rearrangements of Bacillus subtilis strains carrying the trpE26 mutation.” Genetics 126, no. 4 (December 1990): 785–97. https://doi.org/10.1093/genetics/126.4.785.Full Text Link to Item
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Rivas, M. V., E. D. Jarvis, and R. Rudner. “The structure of the trpE, trpD and 5' trpC genes of Bacillus pumilus.” Gene 94, no. 1 (September 28, 1990): 141–43. https://doi.org/10.1016/0378-1119(90)90483-8.Full Text Link to Item
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Rivas, M. V., E. D. Jarvis, and R. Rudner. “The structure of the trpE, trpD and 5' trpC genes of Bacillus pumilus.” Gene 87, no. 1 (March 1, 1990): 71–78. https://doi.org/10.1016/0378-1119(90)90497-f.Full Text Link to Item
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Jarvis, E. D., R. L. Widom, G. LaFauci, Y. Setoguchi, I. R. Richter, and R. Rudner. “Chromosomal organization of rRNA operons in Bacillus subtilis.” Genetics 120, no. 3 (November 1988): 625–35. https://doi.org/10.1093/genetics/120.3.625.Full Text Link to Item
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Widom, R. L., E. D. Jarvis, G. LaFauci, and R. Rudner. “Instability of rRNA operons in Bacillus subtilis.” J Bacteriol 170, no. 2 (February 1988): 605–10. https://doi.org/10.1128/jb.170.2.605-610.1988.Full Text Link to Item
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LaFauci, G., R. L. Widom, R. L. Eisner, E. D. Jarvis, and R. Rudner. “Mapping of rRNA genes with integrable plasmids in Bacillus subtilis.” J Bacteriol 165, no. 1 (January 1986): 204–14. https://doi.org/10.1128/jb.165.1.204-214.1986.Full Text Link to Item
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Book Sections
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Wada, K., C. C. Chen, and E. D. Jarvis. “Detecting neural activity-dependent immediate early gene expression in the brain.” In Methods in Neuroethological Research, 133–49, 2013. https://doi.org/10.1007/978-4-431-54331-2_9.Full Text
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Rivas, M. V., and E. D. Jarvis. “Behaviorally regulated mRNA and protein expression in the songbird brain.” In Neuroproteomics, 239–61, 2009.
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Other Articles
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Rudner, R., and E. D. Jarvis. “The name game.” Scientific American. SCI AMERICAN INC, February 1, 1999.Link to Item
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Conference Papers
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Burmeister, S. S., E. D. Jarvis, and R. D. Fernald. “Rapid response of the preoptic area to social opportunity.” In Integrative and Comparative Biology, 43:844–844. SOC INTEGRATIVE COMPARATIVE BIOLOGY, 2003.Link to Item
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Smith, V Anne, Erich D. Jarvis, and Alexander J. Hartemink. “Influence of network topology and data collection on network inference.” In Pac Symp Biocomput, 164–75, 2003.Open Access Copy Link to Item
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Datasets
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Jarvis, E. D., S. Mirarah, A. Aberer, P. Houde, C. Li, S. Ho, B. C. Faircloth, et al. “Phylogenomic analyses data of the avian phylogenomics project,” 2014. https://doi.org/10.5524/101041.Data Access Open Access Copy Link to Item
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