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Isotopomer enrichment assay for very short chain fatty acids and its metabolic applications.

Publication ,  Journal Article
Tomcik, K; Ibarra, RA; Sadhukhan, S; Han, Y; Tochtrop, GP; Zhang, G-F
Published in: Anal Biochem
March 1, 2011

The present work illustrated an accurate GC/MS measurement for the low isotopomer enrichment assay of formic acid, acetic acid, propionic aicd, butyric acid, and pentanoic acid. The pentafluorobenzyl bromide derivatives of these very short chain fatty acids have high sensitivity of isotopoic enrichment due to their low natural isotopomer distribution in negative chemical ionization mass spectrometric mode. Pentafluorobenzyl bromide derivatization reaction was optimized in terms of pH, temperature, reaction time, and the amount of pentafluorobenzyl bromide versus sample. The precision, stability, and accuracy of this method for the isotopomer analysis were validated. This method was applied to measure the enrichments of formic acid, acetic acid, and propionic acid in the perfusate from rat liver exposed to Krebs-Ringer bicarbonate buffer only, 0-1mM [3,4-(13)C(2)]-4-hydroxynonanoate, and 0-2mM [5,6,7-(13)C(3)]heptanoate. The enrichments of acetic acid and propionic acid in the perfusate are comparable to the labeling pattern of acetyl-CoA and propionyl-CoA in the rat liver tissues. The enrichment of the acetic acid assay is much more sensitive and precise than the enrichment of acetyl-CoA by LC-MS/MS. The reversibility of propionyl-CoA from succinyl-CoA was confirmed by the low labeling of M1 and M2 of propionic acid from [5,6,7-(13)C(3)]heptanoate perfusates.

Duke Scholars

Published In

Anal Biochem

DOI

EISSN

1096-0309

Publication Date

March 1, 2011

Volume

410

Issue

1

Start / End Page

110 / 117

Location

United States

Related Subject Headings

  • Rats, Sprague-Dawley
  • Rats
  • Perfusion
  • Male
  • Isomerism
  • Heptanoic Acids
  • Gas Chromatography-Mass Spectrometry
  • Fatty Acids, Volatile
  • Fatty Acids
  • Carbon Isotopes
 

Citation

APA
Chicago
ICMJE
MLA
NLM
Tomcik, K., Ibarra, R. A., Sadhukhan, S., Han, Y., Tochtrop, G. P., & Zhang, G.-F. (2011). Isotopomer enrichment assay for very short chain fatty acids and its metabolic applications. Anal Biochem, 410(1), 110–117. https://doi.org/10.1016/j.ab.2010.11.030
Tomcik, Kristyen, Rafael A. Ibarra, Sushabhan Sadhukhan, Yong Han, Gregory P. Tochtrop, and Guo-Fang Zhang. “Isotopomer enrichment assay for very short chain fatty acids and its metabolic applications.Anal Biochem 410, no. 1 (March 1, 2011): 110–17. https://doi.org/10.1016/j.ab.2010.11.030.
Tomcik K, Ibarra RA, Sadhukhan S, Han Y, Tochtrop GP, Zhang G-F. Isotopomer enrichment assay for very short chain fatty acids and its metabolic applications. Anal Biochem. 2011 Mar 1;410(1):110–7.
Tomcik, Kristyen, et al. “Isotopomer enrichment assay for very short chain fatty acids and its metabolic applications.Anal Biochem, vol. 410, no. 1, Mar. 2011, pp. 110–17. Pubmed, doi:10.1016/j.ab.2010.11.030.
Tomcik K, Ibarra RA, Sadhukhan S, Han Y, Tochtrop GP, Zhang G-F. Isotopomer enrichment assay for very short chain fatty acids and its metabolic applications. Anal Biochem. 2011 Mar 1;410(1):110–117.
Journal cover image

Published In

Anal Biochem

DOI

EISSN

1096-0309

Publication Date

March 1, 2011

Volume

410

Issue

1

Start / End Page

110 / 117

Location

United States

Related Subject Headings

  • Rats, Sprague-Dawley
  • Rats
  • Perfusion
  • Male
  • Isomerism
  • Heptanoic Acids
  • Gas Chromatography-Mass Spectrometry
  • Fatty Acids, Volatile
  • Fatty Acids
  • Carbon Isotopes