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Wide field-of-view fluorescence image deconvolution with aberration-estimation from Fourier ptychography.

Publication ,  Journal Article
Chung, J; Kim, J; Ou, X; Horstmeyer, R; Yang, C
Published in: Biomedical optics express
February 2016

This paper presents a method to simultaneously acquire an aberration-corrected, wide field-of-view fluorescence image and a high-resolution coherent bright-field image using a computational microscopy method. First, the procedure applies Fourier ptychographic microscopy (FPM) to retrieve the amplitude and phase of a sample, at a resolution that significantly exceeds the cutoff spatial frequency of the microscope objective lens. At the same time, redundancy within the set of acquired FPM bright-field images offers a means to estimate microscope aberrations. Second, the procedure acquires an aberrated fluorescence image, and computationally improves its resolution through deconvolution with the estimated aberration map. An experimental demonstration successfully improves the bright-field resolution of fixed, stained and fluorescently tagged HeLa cells by a factor of 4.9, and reduces the error caused by aberrations in a fluorescence image by up to 31%, over a field of view of 6.2 mm by 9.3 mm. For optimal deconvolution, we show the fluorescence image needs to have a signal-to-noise ratio of at least ~18.

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Published In

Biomedical optics express

DOI

EISSN

2156-7085

ISSN

2156-7085

Publication Date

February 2016

Volume

7

Issue

2

Start / End Page

352 / 368

Related Subject Headings

  • 5102 Atomic, molecular and optical physics
  • 4003 Biomedical engineering
  • 3212 Ophthalmology and optometry
  • 0912 Materials Engineering
  • 0205 Optical Physics
 

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Chung, J., Kim, J., Ou, X., Horstmeyer, R., & Yang, C. (2016). Wide field-of-view fluorescence image deconvolution with aberration-estimation from Fourier ptychography. Biomedical Optics Express, 7(2), 352–368. https://doi.org/10.1364/boe.7.000352
Chung, Jaebum, Jinho Kim, Xiaoze Ou, Roarke Horstmeyer, and Changhuei Yang. “Wide field-of-view fluorescence image deconvolution with aberration-estimation from Fourier ptychography.Biomedical Optics Express 7, no. 2 (February 2016): 352–68. https://doi.org/10.1364/boe.7.000352.
Chung J, Kim J, Ou X, Horstmeyer R, Yang C. Wide field-of-view fluorescence image deconvolution with aberration-estimation from Fourier ptychography. Biomedical optics express. 2016 Feb;7(2):352–68.
Chung, Jaebum, et al. “Wide field-of-view fluorescence image deconvolution with aberration-estimation from Fourier ptychography.Biomedical Optics Express, vol. 7, no. 2, Feb. 2016, pp. 352–68. Epmc, doi:10.1364/boe.7.000352.
Chung J, Kim J, Ou X, Horstmeyer R, Yang C. Wide field-of-view fluorescence image deconvolution with aberration-estimation from Fourier ptychography. Biomedical optics express. 2016 Feb;7(2):352–368.
Journal cover image

Published In

Biomedical optics express

DOI

EISSN

2156-7085

ISSN

2156-7085

Publication Date

February 2016

Volume

7

Issue

2

Start / End Page

352 / 368

Related Subject Headings

  • 5102 Atomic, molecular and optical physics
  • 4003 Biomedical engineering
  • 3212 Ophthalmology and optometry
  • 0912 Materials Engineering
  • 0205 Optical Physics