Using computer vision on herbarium specimen images to discriminate among closely related horsetails (Equisetum).

Published

Journal Article

Premise:Equisetum is a distinctive vascular plant genus with 15 extant species worldwide. Species identification is complicated by morphological plasticity and frequent hybridization events, leading to a disproportionately high number of misidentified specimens. These may be correctly identified by applying appropriate computer vision tools. Methods:We hypothesize that aerial stem nodes can provide enough information to distinguish among Equisetum hyemale, E. laevigatum, and E . ×ferrissii, the latter being a hybrid between the other two. An object detector was trained to find nodes on a given image and to distinguish E. hyemale nodes from those of E. laevigatum. A classifier then took statistics from the detection results and classified the given image into one of the three taxa. Both detector and classifier were trained and tested on expert manually annotated images. Results:In our exploratory test set of 30 images, our detector/classifier combination identified all 10 E. laevigatum images correctly, as well as nine out of 10 E. hyemale images, and eight out of 10 E. ×ferrissii images, for a 90% classification accuracy. Discussion:Our results support the notion that computer vision may help with the identification of herbarium specimens once enough manual annotations become available.

Full Text

Duke Authors

Cited Authors

  • Pryer, KM; Tomasi, C; Wang, X; Meineke, EK; Windham, MD

Published Date

  • June 2020

Published In

Volume / Issue

  • 8 / 6

Start / End Page

  • e11372 -

PubMed ID

  • 32626613

Pubmed Central ID

  • 32626613

Electronic International Standard Serial Number (EISSN)

  • 2168-0450

International Standard Serial Number (ISSN)

  • 2168-0450

Digital Object Identifier (DOI)

  • 10.1002/aps3.11372

Language

  • eng