Abasic sites in the transcribed strand of yeast DNA are removed by transcription-coupled nucleotide excision repair.

Journal Article (Journal Article)

Abasic (AP) sites are potent blocks to DNA and RNA polymerases, and their repair is essential for maintaining genome integrity. Although AP sites are efficiently dealt with through the base excision repair (BER) pathway, genetic studies suggest that repair also can occur via nucleotide excision repair (NER). The involvement of NER in AP-site removal has been puzzling, however, as this pathway is thought to target only bulky lesions. Here, we examine the repair of AP sites generated when uracil is removed from a highly transcribed gene in yeast. Because uracil is incorporated instead of thymine under these conditions, the position of the resulting AP site is known. Results demonstrate that only AP sites on the transcribed strand are efficient substrates for NER, suggesting the recruitment of the NER machinery by an AP-blocked RNA polymerase. Such transcription-coupled NER of AP sites may explain previously suggested links between the BER pathway and transcription.

Full Text

Duke Authors

Cited Authors

  • Kim, N; Jinks-Robertson, S

Published Date

  • July 2010

Published In

Volume / Issue

  • 30 / 13

Start / End Page

  • 3206 - 3215

PubMed ID

  • 20421413

Pubmed Central ID

  • PMC2897580

Electronic International Standard Serial Number (EISSN)

  • 1098-5549

Digital Object Identifier (DOI)

  • 10.1128/MCB.00308-10


  • eng

Conference Location

  • United States