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Michel Bagnat

Nanaline Duke Distinguished Professor
Cell Biology
Duke Box 3709, Durham, NC 27710
333B Nanaline Duke Building, Durham, NC 27710

Overview


Cellular and physiologic mechanisms controlling morphogenesis

Our laboratory is interested in studying how basic cellular processes define the shape and size of complex multicellular structures such as organs. Fluid movement into enclosed lumenal or intracellular spaces creates hydrostatic pressure that can serve as a driving force for organogenesis and long range morphogenetic events such as axis elongation.

Our major focus is to study how biological tubes are assembled and to understand the role hydrostatic pressure plays as a developmental force.

Using zebrafish we investigate:
1) Regulation of fluid secretion and the role of fluid pressure in organogenesis.
2) Role of Lysosome Rich Enterocytes (LREs) in protein absorption and physiology.
3) The biogenesis and function of fluid-filled vacuoles in the notochord during embryogenesis and spine morphogenesis.
4) Cellular mechanisms controlling epithelial polarization and lumen formation in the gut tube.

Current Appointments & Affiliations


Nanaline Duke Distinguished Professor · 2023 - Present Cell Biology, Basic Science Departments
Professor of Cell Biology · 2022 - Present Cell Biology, Basic Science Departments
Member of the Duke Cancer Institute · 2008 - Present Duke Cancer Institute, Institutes and Centers
Affiliate of the Duke Regeneration Center · 2021 - Present Duke Regeneration Center, Basic Science Departments

In the News


Published May 4, 2023
Duke Awards 44 Distinguished Professorships
Published July 20, 2020
Graduate Student’s Mutant Zebrafish Reveals Evolutionary History
Published September 3, 2019
An Alternative Path to Nutrition

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Recent Publications


The mouse neonatal small intestine is regionally specialized for protein absorption and transepithelial transport.

Journal Article Development · December 1, 2025 In neonates, gastric protein digestion is limited, requiring specialized mechanisms for intestinal protein absorption. While neonatal enterocytes are thought to mediate endocytosis, degradation and transcytosis of dietary proteins, whether these activities ... Full text Link to item Cite

Tissue-wide, synchronous Erk oscillations time the segmentation of the zebrafish notochord.

Journal Article bioRxiv · September 2, 2025 The generation of a periodic body plan is a fundamental property of vertebrates. While biological oscillators provide a mechanism for timing the formation of repeated structures, few examples of signaling oscillators have been identified in development. He ... Full text Link to item Cite

Protein absorption in the zebrafish gut is regulated by interactions between lysosome rich enterocytes and the microbiome.

Journal Article Elife · March 13, 2025 Dietary protein absorption in neonatal mammals and fishes relies on the function of a specialized and conserved population of highly absorptive lysosome-rich enterocytes (LREs). The gut microbiome has been shown to enhance absorption of nutrients, such as ... Full text Link to item Cite
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Recent Grants


Dissecting the Signaling and Cellular Mechanisms of Notochord Patterning In Zebrafish

ResearchCo Investigator · Awarded by National Institutes of Health · 2025 - 2030

Investigating Endocytic Mechanisms in Lysosome Rich Enterocytes

ResearchPrincipal Investigator · Awarded by National Institute of Diabetes and Digestive and Kidney Diseases · 2024 - 2029

Regulation of notochord vacuole biogenesis: investigating its role in spine formation and IVD Biology

ResearchPrincipal Investigator · Awarded by National Institute of Arthritis and Musculoskeletal and Skin Diseases · 2024 - 2028

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Education, Training & Certifications


European Molecular Biology Laboratory (Germany) · 2002 Ph.D.
Universidad Autonoma de Madrid (Spain) · 1998 B.S.