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A unifying framework for interpreting and predicting mutualistic systems.

Publication ,  Journal Article
Wu, F; Lopatkin, AJ; Needs, DA; Lee, CT; Mukherjee, S; You, L
Published in: Nature communications
January 2019

Coarse-grained rules are widely used in chemistry, physics and engineering. In biology, however, such rules are less common and under-appreciated. This gap can be attributed to the difficulty in establishing general rules to encompass the immense diversity and complexity of biological systems. Furthermore, even when a rule is established, it is often challenging to map it to mechanistic details and to quantify these details. Here we report a framework that addresses these challenges for mutualistic systems. We first deduce a general rule that predicts the various outcomes of mutualistic systems, including coexistence and productivity. We further develop a standardized machine-learning-based calibration procedure to use the rule without the need to fully elucidate or characterize their mechanistic underpinnings. Our approach consistently provides explanatory and predictive power with various simulated and experimental mutualistic systems. Our strategy can pave the way for establishing and implementing other simple rules for biological systems.

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Published In

Nature communications

DOI

EISSN

2041-1723

ISSN

2041-1723

Publication Date

January 2019

Volume

10

Issue

1

Start / End Page

242

Related Subject Headings

  • Symbiosis
  • Support Vector Machine
  • Probability
  • Models, Biological
  • Food Chain
  • Feasibility Studies
  • Calibration
 

Citation

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Wu, F., Lopatkin, A. J., Needs, D. A., Lee, C. T., Mukherjee, S., & You, L. (2019). A unifying framework for interpreting and predicting mutualistic systems. Nature Communications, 10(1), 242. https://doi.org/10.1038/s41467-018-08188-5
Wu, Feilun, Allison J. Lopatkin, Daniel A. Needs, Charlotte T. Lee, Sayan Mukherjee, and Lingchong You. “A unifying framework for interpreting and predicting mutualistic systems.Nature Communications 10, no. 1 (January 2019): 242. https://doi.org/10.1038/s41467-018-08188-5.
Wu F, Lopatkin AJ, Needs DA, Lee CT, Mukherjee S, You L. A unifying framework for interpreting and predicting mutualistic systems. Nature communications. 2019 Jan;10(1):242.
Wu, Feilun, et al. “A unifying framework for interpreting and predicting mutualistic systems.Nature Communications, vol. 10, no. 1, Jan. 2019, p. 242. Epmc, doi:10.1038/s41467-018-08188-5.
Wu F, Lopatkin AJ, Needs DA, Lee CT, Mukherjee S, You L. A unifying framework for interpreting and predicting mutualistic systems. Nature communications. 2019 Jan;10(1):242.

Published In

Nature communications

DOI

EISSN

2041-1723

ISSN

2041-1723

Publication Date

January 2019

Volume

10

Issue

1

Start / End Page

242

Related Subject Headings

  • Symbiosis
  • Support Vector Machine
  • Probability
  • Models, Biological
  • Food Chain
  • Feasibility Studies
  • Calibration