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Deep Reinforcement Learning-Based Approach for Efficient and Reliable Droplet Routing on MEDA Biochips

Publication ,  Journal Article
Elfar, M; Chang, YC; Ku, HHY; Liang, TC; Chakrabarty, K; Pajic, M
Published in: IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems
April 1, 2023

The micro-electrode-dot-array (MEDA) architecture provides precise droplet control and real-time sensing in digital microfluidic biochips. Previous work has shown that trapped charge under microelectrodes (MCs) leads to droplets being stuck and failures in fluidic operations. A recent approach utilizes real-time sensing of MC health status, and attempts to avoid degraded electrodes during droplet routing. However, the problem with this solution is that the computational complexity is unacceptable for MEDA biochips of realistic size. Consequently, in this work, we introduce a deep reinforcement learning (DRL)-based approach to bypass degraded electrodes and enhance the reliability of routing. The DRL model utilizes the information of health sensing in real time to proactively reduce the likelihood of charge trapping and avoid using degraded MCs. Simulation results show that our approach provides effective routing strategies for COVID-19 testing protocols. We also validate our DRL-based approach using fabricated prototype biochips. Experimental results show that the developed DRL model completed the routing tasks using a fewer number of clock cycles and shorter total execution time, compared with a baseline routing method. Moreover, our DRL-based approach provides reliable routing strategies even in the presence of degraded electrodes. Our experimental results show that the proposed DRL-based routing is robust to occurrences of electrode faults, as well as increases the lifetime and usability of microfluidic biochips compared to existing strategies.

Duke Scholars

Published In

IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems

DOI

EISSN

1937-4151

ISSN

0278-0070

Publication Date

April 1, 2023

Volume

42

Issue

4

Start / End Page

1212 / 1222

Related Subject Headings

  • Computer Hardware & Architecture
  • 4607 Graphics, augmented reality and games
  • 4009 Electronics, sensors and digital hardware
  • 1006 Computer Hardware
  • 0906 Electrical and Electronic Engineering
 

Citation

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Elfar, M., Chang, Y. C., Ku, H. H. Y., Liang, T. C., Chakrabarty, K., & Pajic, M. (2023). Deep Reinforcement Learning-Based Approach for Efficient and Reliable Droplet Routing on MEDA Biochips. IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems, 42(4), 1212–1222. https://doi.org/10.1109/TCAD.2022.3194808
Elfar, M., Y. C. Chang, H. H. Y. Ku, T. C. Liang, K. Chakrabarty, and M. Pajic. “Deep Reinforcement Learning-Based Approach for Efficient and Reliable Droplet Routing on MEDA Biochips.” IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems 42, no. 4 (April 1, 2023): 1212–22. https://doi.org/10.1109/TCAD.2022.3194808.
Elfar M, Chang YC, Ku HHY, Liang TC, Chakrabarty K, Pajic M. Deep Reinforcement Learning-Based Approach for Efficient and Reliable Droplet Routing on MEDA Biochips. IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems. 2023 Apr 1;42(4):1212–22.
Elfar, M., et al. “Deep Reinforcement Learning-Based Approach for Efficient and Reliable Droplet Routing on MEDA Biochips.” IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems, vol. 42, no. 4, Apr. 2023, pp. 1212–22. Scopus, doi:10.1109/TCAD.2022.3194808.
Elfar M, Chang YC, Ku HHY, Liang TC, Chakrabarty K, Pajic M. Deep Reinforcement Learning-Based Approach for Efficient and Reliable Droplet Routing on MEDA Biochips. IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems. 2023 Apr 1;42(4):1212–1222.

Published In

IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems

DOI

EISSN

1937-4151

ISSN

0278-0070

Publication Date

April 1, 2023

Volume

42

Issue

4

Start / End Page

1212 / 1222

Related Subject Headings

  • Computer Hardware & Architecture
  • 4607 Graphics, augmented reality and games
  • 4009 Electronics, sensors and digital hardware
  • 1006 Computer Hardware
  • 0906 Electrical and Electronic Engineering