Quantitative assessment of ligand bias from bias plots: The bias coefficient "kappa".
Publication
, Journal Article
Karl, K; Rajagopal, S; Hristova, K
Published in: Biochim Biophys Acta Gen Subj
October 2023
The current methods for quantifying ligand bias involve the construction of bias plots and the calculations of bias coefficients that can be compared using statistical methods. However, widely used bias coefficients can diverge in their abilities to identify ligand bias and can give false positives. As the empirical bias plots are considered the most reliable tools in bias identification, here we develop an analytical description of bias plot trajectories and introduce a bias coefficient, kappa, which is calculated from these trajectories. The new bias coefficient complements the tool-set in ligand bias identification in cell signaling research.
Duke Scholars
Published In
Biochim Biophys Acta Gen Subj
DOI
EISSN
1872-8006
Publication Date
October 2023
Volume
1867
Issue
10
Start / End Page
130428
Location
Netherlands
Related Subject Headings
- Signal Transduction
- Ligands
- Biochemistry & Molecular Biology
- Bias
- 3101 Biochemistry and cell biology
- 1115 Pharmacology and Pharmaceutical Sciences
- 0601 Biochemistry and Cell Biology
Citation
APA
Chicago
ICMJE
MLA
NLM
Karl, K., Rajagopal, S., & Hristova, K. (2023). Quantitative assessment of ligand bias from bias plots: The bias coefficient "kappa". Biochim Biophys Acta Gen Subj, 1867(10), 130428. https://doi.org/10.1016/j.bbagen.2023.130428
Karl, Kelly, Sudarshan Rajagopal, and Kalina Hristova. “Quantitative assessment of ligand bias from bias plots: The bias coefficient "kappa".” Biochim Biophys Acta Gen Subj 1867, no. 10 (October 2023): 130428. https://doi.org/10.1016/j.bbagen.2023.130428.
Karl K, Rajagopal S, Hristova K. Quantitative assessment of ligand bias from bias plots: The bias coefficient "kappa". Biochim Biophys Acta Gen Subj. 2023 Oct;1867(10):130428.
Karl, Kelly, et al. “Quantitative assessment of ligand bias from bias plots: The bias coefficient "kappa".” Biochim Biophys Acta Gen Subj, vol. 1867, no. 10, Oct. 2023, p. 130428. Pubmed, doi:10.1016/j.bbagen.2023.130428.
Karl K, Rajagopal S, Hristova K. Quantitative assessment of ligand bias from bias plots: The bias coefficient "kappa". Biochim Biophys Acta Gen Subj. 2023 Oct;1867(10):130428.
Published In
Biochim Biophys Acta Gen Subj
DOI
EISSN
1872-8006
Publication Date
October 2023
Volume
1867
Issue
10
Start / End Page
130428
Location
Netherlands
Related Subject Headings
- Signal Transduction
- Ligands
- Biochemistry & Molecular Biology
- Bias
- 3101 Biochemistry and cell biology
- 1115 Pharmacology and Pharmaceutical Sciences
- 0601 Biochemistry and Cell Biology