Skip to main content

Context-aware deep learning enables high-efficacy localization of high concentration microbubbles for super-resolution ultrasound localization microscopy.

Publication ,  Journal Article
Shin, Y; Lowerison, MR; Wang, Y; Chen, X; You, Q; Dong, Z; Anastasio, MA; Song, P
Published in: Nature communications
April 2024

Ultrasound localization microscopy (ULM) enables deep tissue microvascular imaging by localizing and tracking intravenously injected microbubbles circulating in the bloodstream. However, conventional localization techniques require spatially isolated microbubbles, resulting in prolonged imaging time to obtain detailed microvascular maps. Here, we introduce LOcalization with Context Awareness (LOCA)-ULM, a deep learning-based microbubble simulation and localization pipeline designed to enhance localization performance in high microbubble concentrations. In silico, LOCA-ULM enhanced microbubble detection accuracy to 97.8% and reduced the missing rate to 23.8%, outperforming conventional and deep learning-based localization methods up to 17.4% in accuracy and 37.6% in missing rate reduction. In in vivo rat brain imaging, LOCA-ULM revealed dense cerebrovascular networks and spatially adjacent microvessels undetected by conventional ULM. We further demonstrate the superior localization performance of LOCA-ULM in functional ULM (fULM) where LOCA-ULM significantly increased the functional imaging sensitivity of fULM to hemodynamic responses invoked by whisker stimulations in the rat brain.

Duke Scholars

Altmetric Attention Stats
Dimensions Citation Stats

Published In

Nature communications

DOI

EISSN

2041-1723

ISSN

2041-1723

Publication Date

April 2024

Volume

15

Issue

1

Start / End Page

2932

Related Subject Headings

  • Ultrasonography
  • Rats
  • Microvessels
  • Microscopy
  • Microbubbles
  • Intravital Microscopy
  • Deep Learning
  • Animals
 

Citation

APA
Chicago
ICMJE
MLA
NLM
Shin, Y., Lowerison, M. R., Wang, Y., Chen, X., You, Q., Dong, Z., … Song, P. (2024). Context-aware deep learning enables high-efficacy localization of high concentration microbubbles for super-resolution ultrasound localization microscopy. Nature Communications, 15(1), 2932. https://doi.org/10.1038/s41467-024-47154-2
Shin, YiRang, Matthew R. Lowerison, Yike Wang, Xi Chen, Qi You, Zhijie Dong, Mark A. Anastasio, and Pengfei Song. “Context-aware deep learning enables high-efficacy localization of high concentration microbubbles for super-resolution ultrasound localization microscopy.Nature Communications 15, no. 1 (April 2024): 2932. https://doi.org/10.1038/s41467-024-47154-2.
Shin Y, Lowerison MR, Wang Y, Chen X, You Q, Dong Z, et al. Context-aware deep learning enables high-efficacy localization of high concentration microbubbles for super-resolution ultrasound localization microscopy. Nature communications. 2024 Apr;15(1):2932.
Shin, YiRang, et al. “Context-aware deep learning enables high-efficacy localization of high concentration microbubbles for super-resolution ultrasound localization microscopy.Nature Communications, vol. 15, no. 1, Apr. 2024, p. 2932. Epmc, doi:10.1038/s41467-024-47154-2.
Shin Y, Lowerison MR, Wang Y, Chen X, You Q, Dong Z, Anastasio MA, Song P. Context-aware deep learning enables high-efficacy localization of high concentration microbubbles for super-resolution ultrasound localization microscopy. Nature communications. 2024 Apr;15(1):2932.

Published In

Nature communications

DOI

EISSN

2041-1723

ISSN

2041-1723

Publication Date

April 2024

Volume

15

Issue

1

Start / End Page

2932

Related Subject Headings

  • Ultrasonography
  • Rats
  • Microvessels
  • Microscopy
  • Microbubbles
  • Intravital Microscopy
  • Deep Learning
  • Animals