Allen Wuming Song | Scholars@Duke

Allen Wuming Song
Professor in Radiology

The research in our lab is concerned with advancing structural and functional MRI methodologies (e.g. fast and high-resolution imaging techniques) for human brain imaging. We also aim to improve our understanding of functional brain signals, including spatiotemporal characterizations of the blood oxygenation level dependent contrast and alternative contrast mechanisms that are more directly linked to the neuronal activities. Additional effort is invested in applying and validating the developed methods to study human functional neuroanatomy.

Current Appointments & Affiliations

Professor in Radiology, Radiology, Clinical Science Departments 2006
Director of the Center for Brain Imaging and Analysis, Duke-UNC Center for Brain Imaging and Analysis, Institutes and Centers 2006
Professor in Psychiatry and Behavioral Sciences, Psychiatry & Behavioral Sciences, Clinical Science Departments 2006
Professor in Neurobiology, Neurobiology, Basic Science Departments 2007
Member of the Duke Cancer Institute, Duke Cancer Institute, Institutes and Centers 1999
Faculty Network Member of the Duke Institute for Brain Sciences, Duke Institute for Brain Sciences, University Institutes and Centers 2008

Contact Information

40 Duke Medicine Circle, Davison 414, Box 3918, Durham, NC 27710
Brain Imaging And Analysis Ctr, Box 3918, Durham, NC 27710
allen.song@duke.edu (919) 684-1215

Background
Education, Training, & Certifications
- Assistant Professor of Radiology, Tenure Track, Radiology, Emory University 1997 - 1999
- Visiting Fellow, Laboratory Of Brain And Cognition, National Institutes of Health 1996
- Ph.D., Medical College of Wisconsin 1995
Duke Appointment History
- Professor of Biomedical Engineering, Biomedical Engineering, Pratt School of Engineering 2006 - 2018
- Interim Director of the Duke Institute for Brain Sciences, Duke Institute for Brain Sciences, University Institutes and Centers 2015 - 2016
- Associate Director of the Center for Brain Imaging and Analysis, Duke-UNC Center for Brain Imaging and Analysis, Institutes and Centers 1999 - 2006
- Associate Professor in Radiology, Radiology, Clinical Science Departments 2003 - 2006
- Associate Professor in Biomedical Engineering, Biomedical Engineering, Pratt School of Engineering 2004 - 2005
- Assistant Professor in Radiology, Radiology, Clinical Science Departments 1999 - 2003
- Instructor, Temporary in the Department of Radiology, Radiology, Clinical Science Departments 1999
Recognition
In the News
- JUN 26, 2015
  
  Allen Song Named Interim Director of Brain Institute
- OCT 13, 2014 Duke Research Blog
  
  NIH Getting Serious About the Brain
- OCT 1, 2014
  
  Duke Researchers Among the First Funded In President’s BRAIN Initiative
Awards & Honors
- Faculty Early Career Development (CAREER) Program. National Science Foundation. 2001
Research
Selected Grants
- Role of cannabis on HIV-related cognitive impairment: a brain connectomics study awarded by National Institutes of Health 2018 - 2023
- Neuroimaging of Visual Attention in Aging awarded by National Institutes of Health 2011 - 2023
- MRI data fusion to investigate effects of drug abuse on HIV neurological complications awarded by National Institutes of Health 2018 - 2023
- NCANDA Research Project Site: Duke awarded by National Institutes of Health 2012 - 2022
- High Fidelity Diffusion MRI for Children with Cerebral Palsy in Stem Cell Therapy awarded by National Institutes of Health 2012 - 2022
- CRCNS: Geometry-based Brain Connectome Analysis awarded by National Institutes of Health 2018 - 2021
- Oncogenic Signaling Networks awarded by Department of Defense 2012 - 2020
- Integrated RF/shim body coil array for MRI with localized shimming awarded by National Institutes of Health 2017 - 2020
- Whole Eye Optical Coherence Tomography to Improve Refractive Surgery and Eye Care awarded by National Institutes of Health 2014 - 2019
- High Resolution Intracortical DTI for Early Detection of Alzheimer¿s Disease awarded by Neuroradiology Education and Reserach Foundation (formerly Foundation of the ASNR) 2016 - 2019
- Quantitative Susceptibility Mapping of Iron Accumulation in Neurocognitive Aging awarded by National Institutes of Health 2017 - 2019
- The Modulatory Role of Reward on Attentional Brain Processes awarded by National Institutes of Health 2006 - 2019
- Training in Medical Imaging awarded by National Institutes of Health 2003 - 2019
- High-Resolution Diffusion Weighted MRI awarded by General Electric Company 2014 - 2019
- Integrated Parallel Reception, Excitation, and Bo Shimming awarded by GE Healthcare 2016 - 2018
- Basic predoctoral training in neuroscience awarded by National Institutes of Health 1992 - 2018
- Path Toward MRI with Direct Sensitivity to Neuro-Electro-Magnetic Oscillations awarded by National Institutes of Health 2014 - 2018
- Motion-immune neuro and body MRI for challenging patient populations awarded by National Institutes of Health 2014 - 2018
- Imaging of Intrinsic Connectivity Networks awarded by National Institutes of Health 2011 - 2018
- Magnetic resonance imaging with inherent local shimming awarded by National Institutes of Health 2015 - 2018
- FAST- MAS Phase 2A awarded by National Institutes of Health 2013 - 2017
- An Analysis of Psychosocial Risk and Protective Factors: Accelerated Cognitive Aging and Mild Traumatic Brain Injury (MTBI) Among Retired NFL & Former NCAA Football Players awarded by National Institutes of Health 2017
- MRI & Data Analysis Services for MIRECC awarded by Durham Veterans Affairs Medical Center 2015 - 2017
- Neural circuits that regulate social motivation awarded by University of North Carolina - Chapel Hill 2013 - 2017
- Consequences of prolonged febrile seizures in childhood awarded by Albert Einstein College of Medicine 2013 - 2017
- A Compute Cluster for Brain Imaging and Analysis awarded by National Institutes of Health 2016 - 2017
- Susceptibility MRI as a marker for diagnosis and clinical disability in MS awarded by National Institutes of Health 2014 - 2017
- Research Training In Neuro-Oncology awarded by National Institutes of Health 1998 - 2016
- High-resolution in vivo and non-invasive imaging of myocardial fibers awarded by National Institutes of Health 2014 - 2016
- Pathways From Maltreatment to Substance Abuse awarded by National Institutes of Health 2010 - 2016
- Restricted Repetitive Behavior in Autism awarded by University of North Carolina - Chapel Hill 2011 - 2016
- Training in Fundamental &Translational Neuroscience awarded by National Institutes of Health 2005 - 2016
- Direct MRI of Neuroelectric Activity for Animal Neuroimaging awarded by National Institutes of Health 2011 - 2016
- Multidisciplinary Neonatal Training Grant awarded by National Institutes of Health 2010 - 2015
- Imaging Genetic Predictors of Psychotherapy Outcomes in Unipolar Depression awarded by National Institutes of Health 2012 - 2015
- Neuroimaging of Age-Related Changes in Language awarded by National Institutes of Health 2010 - 2015
- Magnetic Resonance Imaging of Cortical Neuronal Activity awarded by National Institutes of Health 2010 - 2015
- Studies of Attention Using Combined ERPs and fMRI awarded by National Institutes of Health 2001 - 2015
- Network Plasticity in Pediatric Traumatic Brain Injury awarded by Child Neurology Foundation 2013 - 2014
- Environments as Smoking Cues: Imaging Brain Substrates, Developing New Treatments awarded by National Institutes of Health 2012 - 2014
- Cross-disciplinary Training in Medical Physics awarded by National Institutes of Health 2007 - 2013
- Longitudinal Functional Imaging of Early Childhood Anxiety Disorders awarded by National Institutes of Health 2008 - 2013
- High Resolution Diffusion-Weighted Magnetic Resonance Imaging at 300-Micron Level awarded by National Institutes of Health 2006 - 2012
- Human Functional Brain Anatomy awarded by National Institutes of Health 2001 - 2012
- Myelin-Specific Diffusion Tensor Imaging for Developmental Neuroimaging awarded by National Institutes of Health 2009 - 2012
- Neural correlates of working memory in children with 22q11.2 deletion syndrome awarded by National Institutes of Health 2010 - 2011
- Precision Targeting of fMRI-Guided TMS Using a Robotic Arm System awarded by National Institutes of Health 2010 - 2011
- Research Training In Neuro-Oncology awarded by National Institutes of Health 2005 - 2010
- Multisensory Processing and Attention awarded by National Science Foundation 2005 - 2010
- K-Space Energy Spectrum Analysis for Echo-Planar Imaging awarded by National Institutes of Health 2007 - 2010
- Direct MRI of Neuroelectric Activity awarded by National Science Foundation 2006 - 2010
- A Linux Cluster Computational Facility for Neuroimaging Research awarded by National Institutes of Health 2009 - 2010
- High Fidelity fMRI awarded by National Institutes of Health 2004 - 2010
- IPA - Francis Favorini awarded by Veterans Administration Medical Center 2007 - 2009
- Neuroimaging of Executive Processing awarded by National Institutes of Health 2005 - 2009
- Neuroimaging Attentional Impairment During Abstinence awarded by National Institutes of Health 2004 - 2009
- IPA - Jacquelynn Price awarded by Veterans Administration Medical Center 2006 - 2008
- Spatiotemporal Dynamics of Emotional Memory Networks awarded by National Institutes of Health 2001 - 2007
- Improved Image Acquisition for Functional Magnetic Resonance Imaging awarded by National Science Foundation 2001 - 2006
- Combined PET and ERP Studies of Selective Attention awarded by National Institute of Mental Health (NIMH) 1997 - 2000
Publications & Artistic Works
Selected Publications
- Academic Articles
  - Truong, T-K, Roberts, KC, Woldorff, MG, and Song, AW. "Toward direct MRI of neuro-electro-magnetic oscillations in the human brain.(Accepted)" Magnetic Resonance in Medicine 81, no. 6 (June 2019): 3462-3475. Full Text
  - Darnell, D, Cuthbertson, J, Robb, F, Song, AW, and Truong, T-K. "Integrated radio-frequency/wireless coil design for simultaneous MR image acquisition and wireless communication." Magnetic Resonance in Medicine 81, no. 3 (March 2019): 2176-2183. Full Text
  - Carpenter, KLH, Major, S, Tallman, C, Chen, LW, Franz, L, Sun, J, Kurtzberg, J, Song, A, and Dawson, G. "White Matter Tract Changes Associated with Clinical Improvement in an Open-Label Trial Assessing Autologous Umbilical Cord Blood for Treatment of Young Children with Autism." Stem Cells Translational Medicine 8, no. 2 (February 2019): 138-147. Full Text
  - Bruce, IP, Petty, C, and Song, AW. "Simultaneous and inherent correction of B0 and eddy-current induced distortions in high-resolution diffusion MRI using reversed polarity gradients and multiplexed sensitivity encoding (RPG-MUSE)." Neuroimage 183 (December 2018): 985-993. Full Text
  - Bell, RP, Barnes, LL, Towe, SL, Chen, N-K, Song, AW, and Meade, CS. "Structural connectome differences in HIV infection: brain network segregation associated with nadir CD4 cell count." Journal of Neurovirology 24, no. 4 (August 2018): 454-463. Full Text
  - Darnell, D, Ma, Y, Wang, H, Robb, F, Song, AW, and Truong, T-K. "Adaptive integrated parallel reception, excitation, and shimming (iPRES-A) with microelectromechanical systems switches." Magnetic Resonance in Medicine 80, no. 1 (July 2018): 371-379. Full Text
  - Shokur, S, Donati, ARC, Campos, DSF, Gitti, C, Bao, G, Fischer, D, Almeida, S, Braga, VAS, Augusto, P, Petty, C, Alho, EJL, Lebedev, M, Song, AW, and Nicolelis, MAL. "Training with brain-machine interfaces, visuo-tactile feedback and assisted locomotion improves sensorimotor, visceral, and psychological signs in chronic paraplegic patients." Plos One 13, no. 11 (January 2018): e0206464-null. Full Text
  - Sun, JM, Song, AW, Case, LE, Mikati, MA, Gustafson, KE, Simmons, R, Goldstein, R, Petry, J, McLaughlin, C, Waters-Pick, B, Chen, LW, Wease, S, Blackwell, B, Worley, G, Troy, J, and Kurtzberg, J. "Effect of Autologous Cord Blood Infusion on Motor Function and Brain Connectivity in Young Children with Cerebral Palsy: A Randomized, Placebo-Controlled Trial." Stem Cells Translational Medicine 6, no. 12 (December 2017): 2071-2078. Full Text
  - Bruce, IP, Chang, H-C, Petty, C, Chen, N-K, and Song, AW. "3D-MB-MUSE: A robust 3D multi-slab, multi-band and multi-shot reconstruction approach for ultrahigh resolution diffusion MRI." NeuroImage 159 (October 2017): 46-56. Full Text
  - Green, JJ, Boehler, CN, Roberts, KC, Chen, L-C, Krebs, RM, Song, AW, and Woldorff, MG. "Cortical and Subcortical Coordination of Visual Spatial Attention Revealed by Simultaneous EEG-fMRI Recording." The Journal of Neuroscience : the Official Journal of the Society for Neuroscience 37, no. 33 (August 2017): 7803-7810. Full Text
  - Hu, Z, Ma, X, Truong, T-K, Song, AW, and Guo, H. "Phase-updated regularized SENSE for navigator-free multishot diffusion imaging." Magnetic resonance in medicine 78, no. 1 (July 2017): 172-181. Full Text
  - Gallentine, WB, Shinnar, S, Hesdorffer, DC, Epstein, L, Nordli, DR, Lewis, DV, Frank, LM, Seinfeld, S, Shinnar, RC, Cornett, K, Liu, B, Moshé, SL, Sun, S, and FEBSTAT Investigator Team, . "Plasma cytokines associated with febrile status epilepticus in children: A potential biomarker for acute hippocampal injury." Epilepsia 58, no. 6 (June 2017): 1102-1111. Full Text
  - Darnell, D, Truong, T-K, and Song, AW. "Integrated parallel reception, excitation, and shimming (iPRES) with multiple shim loops per radio-frequency coil element for improved B0 shimming." Magn Reson Med 77, no. 5 (May 2017): 2077-2086. Full Text Link to Item
  - Chou, Y-H, Sundman, M, Whitson, HE, Gaur, P, Chu, M-L, Weingarten, CP, Madden, DJ, Wang, L, Kirste, I, Joliot, M, Diaz, MT, Li, Y-J, Song, AW, and Chen, N-K. "Maintenance and Representation of Mind Wandering during Resting-State fMRI." Scientific Reports 7 (January 12, 2017): 40722-null. Full Text
  - Harrell, W, Zou, L, Englander, Z, Hooper, SR, Keshavan, MS, Song, A, and Shashi, V. "Frontal Hypoactivation During a Working Memory Task in Children With 22q11 Deletion Syndrome." Journal of child neurology 32, no. 1 (January 2017): 94-99. Full Text
  - Hesdorffer, DC, Shinnar, S, Lax, DN, Pellock, JM, Nordli, DR, Seinfeld, S, Gallentine, W, Frank, LM, Lewis, DV, Shinnar, RC, Bello, JA, Chan, S, Epstein, LG, Moshé, SL, Liu, B, Sun, S, and FEBSTAT study team, . "Risk factors for subsequent febrile seizures in the FEBSTAT study." Epilepsia 57, no. 7 (July 2016): 1042-1047. Full Text
  - Guhaniyogi, S, Chu, M-L, Chang, H-C, Song, AW, and Chen, N-K. "Motion immune diffusion imaging using augmented MUSE for high-resolution multi-shot EPI." Magnetic Resonance in Medicine 75, no. 2 (February 2016): 639-652. Full Text
  - Chang, H-C, Sundman, M, Petit, L, Guhaniyogi, S, Chu, M-L, Petty, C, Song, AW, and Chen, N-K. "Human brain diffusion tensor imaging at submillimeter isotropic resolution on a 3Tesla clinical MRI scanner." Neuroimage 118 (September 2015): 667-675. Full Text
  - Chou, Y-H, Hickey, PT, Sundman, M, Song, AW, and Chen, N-K. "Effects of repetitive transcranial magnetic stimulation on motor symptoms in Parkinson disease: a systematic review and meta-analysis." Jama Neurology 72, no. 4 (April 2015): 432-440. (Review) Full Text
  - Carpenter, KLH, Angold, A, Chen, N-K, Copeland, WE, Gaur, P, Pelphrey, K, Song, AW, and Egger, HL. "Preschool anxiety disorders predict different patterns of amygdala-prefrontal connectivity at school-age." Plos One 10, no. 1 (January 27, 2015): e0116854-null. Full Text Open Access Copy
  - Englander, ZA, Sun, J, Laura Case, , Mikati, MA, Kurtzberg, J, and Song, AW. "Brain structural connectivity increases concurrent with functional improvement: evidence from diffusion tensor MRI in children with cerebral palsy during therapy." Neuroimage. Clinical 7 (January 9, 2015): 315-324. Full Text
  - Li, W, Langkammer, C, Chou, Y-H, Petrovic, K, Schmidt, R, Song, AW, Madden, DJ, Ropele, S, and Liu, C. "Association between increased magnetic susceptibility of deep gray matter nuclei and decreased motor function in healthy adults." Neuroimage 105 (January 2015): 45-52. Full Text Open Access Copy
  - Truong, T-K, Song, AW, and Chen, N-K. "Correction for Eddy Current-Induced Echo-Shifting Effect in Partial-Fourier Diffusion Tensor Imaging." Biomed Res Int 2015 (2015): 185026-null. Full Text Open Access Copy Link to Item
  - Truong, T-K, Darnell, D, and Song, AW. "Integrated RF/shim coil array for parallel reception and localized B0 shimming in the human brain." Neuroimage 103 (December 2014): 235-240. Full Text Link to Item
  - Song, AW, Chang, H-C, Petty, C, Guidon, A, and Chen, N-K. "Improved delineation of short cortical association fibers and gray/white matter boundary using whole-brain three-dimensional diffusion tensor imaging at submillimeter spatial resolution." Brain Connectivity 4, no. 9 (November 2014): 636-640. Full Text Open Access Copy
  - Li, W, Wu, B, Batrachenko, A, Bancroft-Wu, V, Morey, RA, Shashi, V, Langkammer, C, De Bellis, MD, Ropele, S, Song, AW, and Liu, C. "Differential developmental trajectories of magnetic susceptibility in human brain gray and white matter over the lifespan." Human Brain Mapping 35, no. 6 (June 2014): 2698-2713. Full Text Open Access Copy
  - Avram, AV, Guidon, A, Truong, TK, Liu, C, and Song, AW. "Dynamic and inherent B0 correction for DTI using stimulated echo spiral imaging." Magnetic Resonance in Medicine 71, no. 3 (March 1, 2014): 1044-1053. Full Text
  - Younes, L, Ratnanather, JT, Brown, T, Aylward, E, Nopoulos, P, Johnson, H, Magnotta, VA, Paulsen, JS, Margolis, RL, Albin, RL, Miller, MI, Ross, CA, and PREDICT-HD Investigators and Coordinators of the Huntington Study Group, . "Regionally selective atrophy of subcortical structures in prodromal HD as revealed by statistical shape analysis." Human Brain Mapping 35, no. 3 (March 2014): 792-809. Full Text
  - Li, W, Wu, B, Batrachenko, A, Bancroft-Wu, V, Morey, RA, Shashi, V, Langkammer, C, De Bellis, MD, Ropele, S, Song, AW, and Liu, C. "Differential developmental trajectories of magnetic susceptibility in human brain gray and white matter over the lifespan." Human Brain Mapping 35, no. 6 (January 1, 2014): 2698-2713. Full Text
  - Truong, T-K, Guidon, A, and Song, AW. "Cortical depth dependence of the diffusion anisotropy in the human cortical gray matter in vivo.(Published online)" Plos One 9, no. 3 (2014): e91424-null. Full Text Link to Item
  - Chen, N-K, Guidon, A, Chang, H-C, and Song, AW. "A robust multi-shot scan strategy for high-resolution diffusion weighted MRI enabled by multiplexed sensitivity-encoding (MUSE)." Neuroimage 72 (May 15, 2013): 41-47. Full Text Link to Item
  - Avram, AV, Guidon, A, Truong, T-K, Liu, C, and Song, AW. "Dynamic and inherent B₀ correction for DTI using stimulated echo spiral imaging." Magnetic Resonance in Medicine (2013). Full Text
  - Englander, ZA, Pizoli, CE, Batrachenko, A, Sun, J, Worley, G, Mikati, MA, Kurtzberg, J, and Song, AW. "Diffuse reduction of white matter connectivity in cerebral palsy with specific vulnerability of long range fiber tracts." NeuroImage: Clinical 2, no. 1 (2013): 440-447. Full Text
  - Han, H, Song, AW, and Truong, T-K. "Integrated parallel reception, excitation, and shimming (iPRES)." Magnetic Resonance in Medicine (2013). Full Text
  - Han, H, Song, AW, and Truong, T-K. "Integrated parallel reception, excitation, and shimming (iPRES)." Magnetic Resonance in Medicine 70, no. 1 (2013): 241-247. Full Text
  - Truong, T-K, Chen, N-K, and Song, AW. "Inherent correction of motion-induced phase errors in multishot spiral diffusion-weighted imaging." Magn Reson Med 68, no. 4 (October 2012): 1255-1261. Full Text Link to Item
  - Dichter, GS, Sikich, L, Song, A, Voyvodic, J, and Bodfish, JW. "Functional neuroimaging of treatment effects in psychiatry: methodological challenges and recommendations." Int J Neurosci 122, no. 9 (September 2012): 483-493. (Review) Full Text Link to Item
  - Mani, M, Jacob, M, Guidon, A, Liu, C, Song, A, Magnotta, V, and Zhong, J. "Acceleration of high angular and spatial resolution diffusion imaging using compressed sensing." Proceedings International Symposium on Biomedical Imaging (August 15, 2012): 326-329. Full Text
  - Song, AW. "Diffusion modulation of the fMRI signal: early investigations on the origin of the BOLD signal." Neuroimage 62, no. 2 (August 15, 2012): 949-952. (Review) Full Text Link to Item
  - Krebs, RM, Boehler, CN, Roberts, KC, Song, AW, and Woldorff, MG. "The involvement of the dopaminergic midbrain and cortico-striatal-thalamic circuits in the integration of reward prospect and attentional task demands." Cerebral Cortex (New York, N.Y. : 1991) 22, no. 3 (March 2012): 607-615. Full Text
  - Madden, DJ, Bennett, IJ, Burzynska, A, Potter, GG, Chen, N-K, and Song, AW. "Diffusion tensor imaging of cerebral white matter integrity in cognitive aging." Biochimica Et Biophysica Acta 1822, no. 3 (March 2012): 386-400. (Review) Full Text
  - Chen, N-K, Avram, AV, and Song, AW. "Two-dimensional phase cycled reconstruction for inherent correction of echo-planar imaging Nyquist artifacts." Magn Reson Med 66, no. 4 (October 2011): 1057-1066. Full Text Link to Item
  - Truong, T-K, Chen, N-K, and Song, AW. "Dynamic correction of artifacts due to susceptibility effects and time-varying eddy currents in diffusion tensor imaging." Neuroimage 57, no. 4 (August 15, 2011): 1343-1347. Full Text Link to Item
  - Holt, RL, Provenzale, JM, Veerapandiyan, A, Moon, W-J, De Bellis, MD, Leonard, S, Gallentine, WB, Grant, GA, Egger, H, Song, AW, and Mikati, MA. "Structural connectivity of the frontal lobe in children with drug-resistant partial epilepsy." Epilepsy Behav 21, no. 1 (May 2011): 65-70. Full Text Link to Item
  - Avram, AV, Guidon, A, and Song, AW. "Myelin water weighted diffusion tensor imaging." Neuroimage 53, no. 1 (October 15, 2010): 132-138. Full Text Link to Item
  - Truong, T-K, Chen, N-K, and Song, AW. "Application of k-space energy spectrum analysis for inherent and dynamic B0 mapping and deblurring in spiral imaging." Magn Reson Med 64, no. 4 (October 2010): 1121-1127. Full Text Link to Item
  - Song, AW, and Truong, TK. "Apparent diffusion coefficient dependent fMRI: Spatiotemporal characteristics and implications on calibrated fMRI." International Journal of Imaging Systems and Technology 20, no. 1 (March 1, 2010): 42-50. Full Text
  - Smith, DV, Hayden, BY, Truong, T-K, Song, AW, Platt, ML, and Huettel, SA. "Distinct value signals in anterior and posterior ventromedial prefrontal cortex." The Journal of Neuroscience : the Official Journal of the Society for Neuroscience 30, no. 7 (February 2010): 2490-2495. Full Text
  - Heng, S, Song, AW, and Sim, K. "White matter abnormalities in bipolar disorder: Insights from diffusion tensor imaging studies." Journal of Neural Transmission 117, no. 5 (2010): 639-654. Full Text
  - Krebs, RM, Schoenfeld, MA, Boehler, CN, Song, AW, and Woldorff, MG. "The Saccadic Re-Centering Bias is Associated with Activity Changes in the Human Superior Colliculus." Frontiers in Human Neuroscience 4 (January 2010): 193-null. Full Text
  - Madden, DJ, Bennett, IJ, and Song, AW. "Cerebral white matter integrity and cognitive aging: contributions from diffusion tensor imaging." Neuropsychology Review 19, no. 4 (December 2009): 415-435. (Review) Full Text
  - Chen, N-K, Chou, Y-H, Song, AW, and Madden, DJ. "Measurement of spontaneous signal fluctuations in fMRI: adult age differences in intrinsic functional connectivity." Brain Struct Funct 213, no. 6 (October 2009): 571-585. Full Text Link to Item
  - Truong, T-K, and Song, AW. "Cortical depth dependence and implications on the neuronal specificity of the functional apparent diffusion coefficient contrast." Neuroimage 47, no. 1 (August 1, 2009): 65-68. Full Text Link to Item
  - Venkatraman, TN, Krishnan, RR, Steffens, DC, Song, AW, and Taylor, WD. "Biochemical abnormalities of the medial temporal lobe and medial prefrontal cortex in late-life depression." Psychiatry Res 172, no. 1 (April 30, 2009): 49-54. Full Text Link to Item
  - Chen, N-K, Chou, Y-H, Song, AW, and Madden, DJ. "Measurement of spontaneous signal fluctuations in fMRI: adult age differences in intrinsic functional connectivity." Brain Structure and Function (2009): 1-15. Full Text
  - Cohen-Adad, J, Hoge, RD, Leblond, H, Xie, G, Beaudoin, G, Song, AW, Krueger, G, Doyon, J, Benali, H, and Rossignol, S. "Investigations on spinal cord fMRI of cats under ketamine." NeuroImage 44, no. 2 (2009): 328-339. Full Text
  - Song, AW, Truong, T-K, and Woldorff, M. "Dynamic MRI of small electrical activity." Methods in Molecular Biology 489 (2009): 297-315. Full Text
  - Song, AW, Truong, T-K, and Woldorff, M. "Dynamic MRI of small electrical activity." Methods in Molecular Biology 489 (2009): 297-315. Full Text
  - Harshbarger, TB, and Song, AW. "Differentiating sensitivity of post-stimulus undershoot under diffusion weighting: implication of vascular and neuronal hierarchy. (Published online)" PLoS One 3, no. 8 (August 13, 2008): e2914-. Full Text Open Access Copy Link to Item
  - Truong, T-K, Avram, A, and Song, AW. "Lorentz effect imaging of ionic currents in solution." J Magn Reson 191, no. 1 (March 2008): 93-99. Full Text Link to Item
  - Truong, T-K, Chen, B, and Song, AW. "Integrated SENSE DTI with correction of susceptibility- and eddy current-induced geometric distortions." Neuroimage 40, no. 1 (March 2008): 53-58. Full Text
  - Chen, B, and Song, AW. "Diffusion tensor imaging fiber tracking with local tissue property sensitivity: phantom and in vivo validation." Magnetic Resonance Imaging 26, no. 1 (January 2008): 103-108. Full Text
  - Truong, T-K, and Song, AW. "Single-shot dual-z-shimmed sensitivity-encoded spiral-in/out imaging for functional MRI with reduced susceptibility artifacts." Magnetic Resonance in Medicine 59, no. 1 (January 2008): 221-227. Full Text
  - Roberts, KC, Tran, TT, Song, AW, and Woldorff, MG. "Component structure of event-related fMRI responses in the different neurovascular compartments." Magnetic Resonance Imaging 25, no. 3 (April 2007): 328-334. Full Text
  - Song, AW, Guo, H, and Truong, T-K. "Single-shot ADC imaging for fMRI." Magnetic Resonance in Medicine 57, no. 2 (February 2007): 417-422. Full Text
  - Harshbarger, TB, and Song, AW. "Endogenous functional CBV contrast revealed by diffusion weighting." NMR Biomed 19, no. 8 (December 2006): 1020-1027. Full Text Link to Item
  - Truong, T-K, and Song, AW. "Finding neuroelectric activity under magnetic-field oscillations (NAMO) with magnetic resonance imaging in vivo." Proceedings of the National Academy of Sciences of the United States of America 103, no. 33 (August 7, 2006): 12598-12601. Full Text
  - Michelich, CR, Song, AW, and Macfall, JR. "Dependence of gradient-echo and spin-echo BOLD fMRI at 4 T on diffusion weighting." NMR Biomed 19, no. 5 (August 2006): 566-572. Full Text Link to Item
  - Venkatraman, TN, Hamer, RM, Perkins, DO, Song, AW, Lieberman, JA, and Steen, RG. "Single-voxel 1H PRESS at 4.0 T: precision and variability of measurements in anterior cingulate and hippocampus." Nmr in Biomedicine 19, no. 4 (June 2006): 484-491. Full Text
  - Chen, B, Guo, H, and Song, AW. "Correction for direction-dependent distortions in diffusion tensor imaging using matched magnetic field maps." Neuroimage 30, no. 1 (March 2006): 121-129. Full Text
  - Truong, T-K, Wilbur, JL, and Song, AW. "Synchronized detection of minute electrical currents with MRI using Lorentz effect imaging." Journal of Magnetic Resonance (San Diego, Calif. : 1997) 179, no. 1 (March 2006): 85-91. Full Text
  - Segal, RL, and Song, AW. "Nonuniform activity of human calf muscles during an exercise task." Archives of Physical Medicine and Rehabilitation 86, no. 10 (October 2005): 2013-2017. Full Text
  - Huettel, SA, Song, AW, and McCarthy, G. "Decisions under uncertainty: probabilistic context influences activation of prefrontal and parietal cortices." The Journal of Neuroscience : the Official Journal of the Society for Neuroscience 25, no. 13 (March 2005): 3304-3311. Full Text
  - Wang, L, McCarthy, G, Song, AW, and Labar, KS. "Amygdala activation to sad pictures during high-field (4 tesla) functional magnetic resonance imaging." Emotion 5, no. 1 (March 2005): 12-22. Full Text Link to Item
  - Harshbarger, TB, and Song, AW. "B factor dependence of the temporal characteristics of brain activation using dynamic apparent diffusion coefficient contrast." Magn Reson Med 52, no. 6 (December 2004): 1432-1437. Full Text Link to Item
  - Lascola, CD, Song, AW, Haystead, TA, Warner, DS, Verleysen, K, Freed, TA, and Provenzale, JM. "Changes in magnetization transfer MRI correlate with spreading depression-induced astroglial reactivity and increased protein expression in mice." AJR Am J Roentgenol 183, no. 6 (December 2004): 1791-1797. Full Text Link to Item
  - Huettel, SA, Obembe, OO, Song, AW, and Woldorff, MG. "The BOLD fMRI refractory effect is specific to stimulus attributes: evidence from a visual motion paradigm." Neuroimage 23, no. 1 (September 2004): 402-408. Full Text
  - Inan, S, Mitchell, T, Song, A, Bizzell, J, and Belger, A. "Hemodynamic correlates of stimulus repetition in the visual and auditory cortices: an fMRI study." Neuroimage 21, no. 3 (March 2004): 886-893. Full Text Link to Item
  - Song, AW, and Gangstead, SL. "The spatial and temporal characteristics of the apparent-diffusion-coefficient-dependent fMRI signal changes during visual stimulation." J Neural Eng 1, no. 1 (March 2004): 32-38. Full Text Link to Item
  - Huettel, SA, McKeown, MJ, Song, AW, Hart, S, Spencer, DD, Allison, T, and McCarthy, G. "Linking hemodynamic and electrophysiological measures of brain activity: evidence from functional MRI and intracranial field potentials." Cereb Cortex 14, no. 2 (February 2004): 165-173. Link to Item
  - Song, AW, Emberger, K, Michelich, CR, and McCarthy, G. "FMRI signal source analysis using diffusion-weighted spiral-in acquisition." Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings 26 VI (2004): 4417-4420.
  - Woldorff, MG, Hazlett, CJ, Fichtenholtz, HM, Weissman, DH, Dale, AM, and Song, AW. "Functional parcellation of attentional control regions of the brain." Journal of Cognitive Neuroscience 16, no. 1 (January 2004): 149-165. Full Text Open Access Copy
  - Li, T, and Song, AW. "Fast functional brain signal changes detected by diffusion weighted fMRI." Magn Reson Imaging 21, no. 8 (October 2003): 829-833. Link to Item
  - Song, AW, Harshbarger, T, Li, T, Kim, K-H, Ugurbil, K, Mori, S, and Kim, D-S. "Functional activation using apparent diffusion coefficient-dependent contrast allows better spatial localization to the neuronal activity: evidence using diffusion tensor imaging and fiber tracking." Neuroimage 20, no. 2 (October 2003): 955-961. Full Text
  - Guo, H, and Song, AW. "Single-shot spiral image acquisition with embedded z-shimming for susceptibility signal recovery." J Magn Reson Imaging 18, no. 3 (September 2003): 389-395. Full Text Link to Item
  - Weissman, DH, Giesbrecht, B, Song, AW, Mangun, GR, and Woldorff, MG. "Conflict monitoring in the human anterior cingulate cortex during selective attention to global and local object features." Neuroimage 19, no. 4 (August 2003): 1361-1368. Full Text
  - Giesbrecht, B, Woldorff, MG, Song, AW, and Mangun, GR. "Neural mechanisms of top-down control during spatial and feature attention." Neuroimage 19, no. 3 (July 2003): 496-512. Full Text
  - Sha, L, Guo, H, and Song, AW. "An improved gridding method for spiral MRI using nonuniform fast Fourier transform." Journal of Magnetic Resonance (San Diego, Calif. : 1997) 162, no. 2 (June 2003): 250-258. Full Text
  - Pelphrey, KA, Mack, PB, Song, A, Güzeldere, G, and McCarthy, G. "Faces evoke spatially differentiated patterns of BOLD activation and deactivation." Neuroreport 14, no. 7 (May 2003): 955-959. Full Text Open Access Copy
  - Song, AW, and Li, T. "Improved spatial localization based on flow-moment-nulled and intra-voxel incoherent motion-weighted fMRI." NMR Biomed 16, no. 3 (May 2003): 137-143. Full Text Link to Item
  - Chee, MWL, Westphal, C, Goh, J, Graham, S, and Song, AW. "Word frequency and subsequent memory effects studied using event-related fMRI." NeuroImage 20, no. 2 (2003): 1042-1051. Full Text
  - Eastwood, JD, Holder, CA, Hudgins, PA, and Song, AW. "Magnetic resonance imaging with lateralized arterial spin labeling." Magn Reson Imaging 20, no. 8 (October 2002): 583-586. Link to Item
  - Song, AW, Woldorff, MG, Gangstead, S, Mangun, GR, and McCarthy, G. "Enhanced spatial localization of neuronal activation using simultaneous apparent-diffusion-coefficient and blood-oxygenation functional magnetic resonance imaging." Neuroimage 17, no. 2 (October 2002): 742-750. Full Text
  - Song, AW, Fichtenholtz, H, and Woldorff, M. "BOLD signal compartmentalization based on the apparent diffusion coefficient." Magn Reson Imaging 20, no. 7 (September 2002): 521-525. Open Access Copy Link to Item
  - Gangstead, SL, and Song, AW. "On the timing characteristics of the apparent diffusion coefficient contrast in fMRI." Magn Reson Med 48, no. 2 (August 2002): 385-388. Full Text Link to Item
  - Doyon, J, Song, AW, Karni, A, Lalonde, F, Adams, MM, and Ungerleider, LG. "Experience-dependent changes in cerebellar contributions to motor sequence learning." Proceedings of the National Academy of Sciences of the United States of America 99, no. 2 (January 2002): 1017-1022. Full Text
  - Livingston, BP, Segal, RL, Song, A, Hopkins, K, English, AW, and Manning, CC. "Functional activation of the extensor carpi radialis muscles in humans." Archives of Physical Medicine and Rehabilitation 82, no. 9 (September 2001): 1164-1170. Full Text
  - Song, AW. "Single-shot EPI with signal recovery from the susceptibility-induced losses." Magn Reson Med 46, no. 2 (August 2001): 407-411. Link to Item
  - Song, AW, and Takahashi, AM. "Lorentz effect imaging." Magn Reson Imaging 19, no. 6 (July 2001): 763-767. Link to Item
  - Haist, F, Song, AW, Wild, K, Faber, TL, Popp, CA, and Morris, RD. "Linking sight and sound: fMRI evidence of primary auditory cortex activation during visual word recognition." Brain and Language 76, no. 3 (2001): 340-350. Full Text
  - Song, AW, Popp, CA, Mao, J, and Dixon, WT. "fMRI: methodology--acquisition and processing." Advances in neurology 83 (2000): 177-185.
  - Berns, GS, Song, AW, and Mao, H. "Nonlinear spatiotemporal dynamics of functional MRI revealed by independent components analysis." Annual International Conference of the Ieee Engineering in Medicine and Biology Proceedings 2 (December 1, 1999): 1184-null.
  - Doyon, J, Song, AW, Lalonde, F, Karni, A, Adams, MM, and Ungerleider, LG. "Plastic changes within the cerebellum associated with motor sequence learning: afMRI study." Neuroimage 9, no. 6 PART II (December 1, 1999).
  - Song, AW, Mao, H, Muthupillai, R, Haist, F, and Dixon, WT. "Segmented spin-echo pulses to increase fMRI signal: repeated intrinsic diffusional enhancement." Magn Reson Med 42, no. 4 (October 1999): 631-635. Link to Item
  - Berns, GS, Song, AW, and Mao, H. "Continuous functional magnetic resonance imaging reveals dynamic nonlinearities of "dose-response" curves for finger opposition." The Journal of Neuroscience : the Official Journal of the Society for Neuroscience 19, no. 14 (July 1999): RC17-null. Full Text
  - Song, AW, Mao, H, Muthupillai, R, Haist, F, and Dixon, WT. "Segmented spin-echo pulses to increase fMRI signal: Repeated intrinsic diffusional enhancement." Magnetic Resonance in Medicine 42, no. 4 (1999): 631-635. Full Text
  - Votaw, JR, Faber, TL, Popp, CA, Henry, TR, Trudeau, JD, Woodard, JL, Mao, H, Hoffman, JM, and Song, AW. "A confrontational naming task produces congruent increases and decreases in PET and fMRI." NeuroImage 10, no. 4 (1999): 347-356. Full Text
  - Mao, H, Muthupillai, R, Kennedy, PR, Popp, CA, and Song, AW. "Clinical application of fMRI: Motor cortex activation in a paralysed patient." Medicamundi 42, no. 3 (December 1, 1998): 19-22.
  - Popp, CA, Votaw, JR, Faber, TL, Henry, TR, Trudeau, JD, Woodard, J, Mao, H, Woods, RM, Hoffman, JM, and Song, AW. "fMRI and PET studies of a visual confrontation naming task." Neuroimage 7, no. 4 PART II (December 1, 1998).
  - Song, AW, Dixon, WT, Mao, H, and Weingarten, CP. "The use of Repeated Intrinsic Diffuional Enhancement (RIDE) to increase fMRI contrast." Neuroimage 7, no. 4 PART II (December 1, 1998).
  - Popp Weingarten, CA, Song, AW, Wong, EC, Cotsonis, G, and Hyde, JS. "T1-selective diffusion weighted fMRI at 1.5 T." NMR Biomed. (UK) 11, no. 8 (1998): 405-413. (Academic Article) Full Text Link to Item
  - Doyon, J, Karni, A, Song, AW, Adams, MM, Maisog, JM, and Ungerleider, LG. "Dynamic changes in the motor cortical areas, striatum and cerebellum during explicit and implicit learning of a visuomotor skill: A fMRI study." Neuroimage 5, no. 4 PART II (December 1, 1997).
  - Song, AW, Wolff, SD, Balaban, RS, and Jezzard, P. "The effect of off-resonance radiofrequency pulse saturation on fMRI contrast." NMR in Biomedicine 10, no. 4-5 (1997): 208-215.
  - Jezzard, P, and Song, AW. "Technical foundations and pitfalls of clinical fMRI." NeuroImage 4, no. 3 SUPPL. 2 (1996): S63-S75. Full Text
  - Song, AW, Wong, EC, Tan, SG, and Hyde, JS. "Diffusion weighted fMRI at 1.5 T." Magnetic Resonance in Medicine 35, no. 2 (1996): 155-158. Full Text
  - Wong, EC, Cox, RW, and Song, AW. "Optimized isotropic diffusion weighting." Magnetic Resonance in Medicine 34, no. 2 (August 1995): 139-143. Full Text
  - Song, AW, Wong, EC, and Hyde, JS. "Echo-volume imaging." Magnetic Resonance in Medicine 32, no. 5 (1994): 668-671. Full Text
- Conference Papers
  - Helmer, KG, Chou, MC, Preciado, RI, Gimi, B, Rollins, NK, Song, A, Turner, J, and Mori, S. "Multi-site study of diffusion metric variability: Effects of site, vendor, field strength, and echo time on regions-of-interest and histogram-bin analyses." January 1, 2016. Full Text
  - Helmer, KG, Chou, MC, Preciado, RI, Gimi, B, Rollins, NK, Song, A, Turner, J, and Mori, S. "Multi-site study of diffusion metric variability: Characterizing the effects of site, vendor, field strength, and echo time using the histogram distance." January 1, 2016. Full Text
Teaching & Mentoring
Recent Courses
- BME 493: Projects in Biomedical Engineering (GE) 2017

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