Scholars@Duke
Defne Çirci

Selected Publications

How Well Do Large Language Models Understand Tables in Materials Science?

Journal Article Integrating Materials and Manufacturing Innovation · September 1, 2024 Advances in materials science require leveraging past findings and data from the vast published literature. While some materials data repositories are being built, they typically rely on newly created data in narrow domains because extracting detailed data ... Full text Cite

14 examples of how LLMs can transform materials science and chemistry: a reflection on a large language model hackathon.

Journal Article Digital discovery · October 2023 Large-language models (LLMs) such as GPT-4 caught the interest of many scientists. Recent studies suggested that these models could be useful in chemistry and materials science. To explore these possibilities, we organized a hackathon. This article chronic ... Full text Cite

The Mutation Profile of SARS-CoV-2 Is Primarily Shaped by the Host Antiviral Defense.

Journal Article Viruses · March 2021 Understanding SARS-CoV-2 evolution is a fundamental effort in coping with the COVID-19 pandemic. The virus genomes have been broadly evolving due to the high number of infected hosts world-wide. Mutagenesis and selection are two inter-dependent mechanisms ... Full text Cite

Phylogenetic analysis of SARS-CoV-2 genomes in Turkey.

Journal Article Turkish journal of biology = Turk biyoloji dergisi · January 2020 COVID-19 has effectively spread worldwide. As of May 2020, Turkey is among the top ten countries with the most cases. A comprehensive genomic characterization of the virus isolates in Turkey is yet to be carried out. Here, we built a phylogenetic tree with ... Full text Cite