Scholars@Duke

• Expertise
• 

  Subject Headings

  • Biostatistics
  • Clinical trials
  • Cluster Analysis
  • HIV
• 

  Global Scholarship

  • Research

    • Argentina (Country) 
    • Bangladesh (Country) 
    • Brazil (Country) 
    • China (Country) 
    • Democratic Republic of the Congo (Country) 
    • Guatemala (Country) 
    • India (Country) 
    • Malawi (Country) 
    • Pakistan (Country) 
    • United States of America (Country) 
    • Zambia (Country) 

  • Teaching

    • Bangladesh (Country) 
    • China (Country) 
    • India (Country) 
    • United States of America (Country) 
• Research
• 

  Selected Grants

  • The IGNITE II CC: Engagement, Coordination, Demonstration, and Dissemination awarded by National Institutes of Health 2018 - 2023
  • The IGNITE II CC: Engagement, Coordination, Demonstration, and Dissemination awarded by National Institutes of Health 2018 - 2023
  • Rapid diagnosis and quantification of HIV by direct capture, labelling and detection of individual virions awarded by National Institutes of Health 2019 - 2022
  • HiLo awarded by National Institutes of Health 2018 - 2019
• Publications & Artistic Works
• 

  Selected Publications

  • Academic Articles

    • Reddy, Yogesh N. V., Gregory D. Lewis, Sanjiv J. Shah, Masaru Obokata, Omar F. Abou-Ezzedine, Marat Fudim, Jie-Lena Sun, et al. “Characterization of the Obese Phenotype of Heart Failure With Preserved Ejection Fraction: A RELAX Trial Ancillary Study..” Mayo Clinic Proceedings 94, no. 7 (July 2019): 1199–1209. https://doi.org/10.1016/j.mayocp.2018.11.037.
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    • Waymyers, S. D., S. Dey, and H. Chakraborty. “A new generalization of the gamma distribution with application to negatively skewed survival data.” Communications in Statistics: Simulation and Computation 47, no. 7 (August 9, 2018): 2083–2101. https://doi.org/10.1080/03610918.2017.1335408.
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    • Chakraborty, Hrishikesh, and Akhtar Hossain. “R package to estimate intracluster correlation coefficient with confidence interval for binary data..” Computer Methods and Programs in Biomedicine 155 (March 2018): 85–92. https://doi.org/10.1016/j.cmpb.2017.10.023.
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    • Turley, C. B., J. Brittingham, A. Moonan, D. Davis, and H. Chakraborty. “Statewide longitudinal progression of the whole-patient measure of safety in South Carolina.” Journal for Healthcare Quality 40, no. 5 (January 1, 2018): 256–64. https://doi.org/10.1097/JHQ.0000000000000092.
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    • Wooten, Nikki R., Abbas S. Tavakoli, Marlene B. Al-Barwani, Naomi A. Thomas, Hrishikesh Chakraborty, Anna M. Scheyett, Kelly M. Kaminski, Alyssia C. Woods, and Sue E. Levkoff. “Comparing behavioral health models for reducing risky drinking among older male veterans..” The American Journal of Drug and Alcohol Abuse 43, no. 5 (September 2017): 545–55. https://doi.org/10.1080/00952990.2017.1286499.
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    • Chakraborty, Hrishikesh, Robert Neal Axon, Jordan Brittingham, Genevieve Ray Lyons, Laura Cole, and Christine B. Turley. “Differences in Hospital Readmission Risk across All Payer Groups in South Carolina..” Health Services Research 52, no. 3 (June 2017): 1040–60. https://doi.org/10.1111/1475-6773.12579.
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    • Chakraborty, Hrishikesh, Sharon Weissman, Wayne A. Duffus, Akhtar Hossain, Ashok Varma Samantapudi, Medha Iyer, and Helmut Albrecht. “HIV community viral load trends in South Carolina..” International Journal of Std & Aids 28, no. 3 (March 2017): 265–76. https://doi.org/10.1177/0956462416642349.
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    • Nurul Azam, Mohammad, Mahbuba Yeasmin, Nasar U. Ahmed, and Hrishikesh Chakraborty. “Modeling Occurrence of Dengue Cases in Malaysia..” Iranian Journal of Public Health 45, no. 11 (November 2016): 1511–12.
    • Chakraborty, H., and P. K. Sen. “Resampling method to estimate intra-cluster correlation for clustered binary data.” Communications in Statistics  Theory and Methods 45, no. 8 (April 17, 2016): 2368–77. https://doi.org/10.1080/03610926.2013.870202.
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    • Chakraborty, Hrishikesh, Shobhana Patted, Anita Gan, Farahnaz Islam, and Amit Revankar. “Determinants of Intimate Partner Violence Among HIV-Positive and HIV-Negative Women in India..” Journal of Interpersonal Violence 31, no. 3 (February 2016): 515–30. https://doi.org/10.1177/0886260514555867.
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    • Casanova, Emily L., Julia L. Sharp, Hrishikesh Chakraborty, Nahid Sultana Sumi, and Manuel F. Casanova. “Genes with high penetrance for syndromic and non-syndromic autism typically function within the nucleus and regulate gene expression..” Molecular Autism 7 (January 2016). https://doi.org/10.1186/s13229-016-0082-z.
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    • Wang, Alberta L., Rui-Rui Peng, Joseph D. Tucker, Hrishikesh Chakraborty, Myron S. Cohen, and Xiang-Sheng Chen. “Optimizing Partner Notification Programs for Men Who Have Sex with Men: Factorial Survey Results from South China..” Plos One 11, no. 7 (January 2016). https://doi.org/10.1371/journal.pone.0157749.
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    • Weissman, Sharon, Wayne A. Duffus, Medha Iyer, Hrishikesh Chakraborty, Ashok Varma Samantapudi, and Helmut Albrecht. “Rural-urban differences in HIV viral loads and progression to AIDS among new HIV cases..” Southern Medical Journal 108, no. 3 (March 2015): 180–88. https://doi.org/10.14423/smj.0000000000000255.
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    • Chakraborty, H., and G. Lyons. “Cluster randomized trials: Considerations for design and analysis.” Journal of Statistical Theory and Practice 9, no. 3 (January 1, 2015): 685–98. https://doi.org/10.1080/15598608.2014.992081.
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    • Chakraborty, Hrishikesh, Medha Iyer, Wayne A. Duffus, Ashok Varma Samantapudi, Helmut Albrecht, and Sharon Weissman. “Disparities in viral load and CD4 count trends among HIV-infected adults in South Carolina..” Aids Patient Care and Stds 29, no. 1 (January 2015): 26–32. https://doi.org/10.1089/apc.2014.0158.
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    • Wallander, Jan L., Fred J. Biasini, Vanessa Thorsten, Sangappa M. Dhaded, Desiree M. de Jong, Elwyn Chomba, Omrana Pasha, et al. “Dose of early intervention treatment during children's first 36 months of life is associated with developmental outcomes: an observational cohort study in three low/low-middle income countries..” Bmc Pediatrics 14 (October 25, 2014). https://doi.org/10.1186/1471-2431-14-281.
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    • Pal Saha, Soma, Swapan Bhattacharyya, and Hrishikesh Chakraborty. “Solubilization of tricalcium phosphate by P(3HB) accumulating Azotobacter chroococcum MAL-201..” World Journal of Microbiology & Biotechnology 30, no. 5 (May 2014): 1575–82. https://doi.org/10.1007/s11274-013-1580-1.
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    • Chakraborty, Hrishikesh, Kwame A. Nyarko, Norman Goco, Janet Moore, Danilo Moretti-Ferreira, Jeffrey C. Murray, and George L. Wehby. “Folic Acid Fortification and Women's Folate Levels in Selected Communities in Brazil - A First Look..” International Journal for Vitamin and Nutrition Research. Internationale Zeitschrift Fur Vitamin  Und Ernahrungsforschung. Journal International De Vitaminologie Et De Nutrition 84, no. 5–6 (January 2014): 286–94. https://doi.org/10.1024/0300-9831/a000215.
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    • Weissman, Sharon, Wayne A. Duffus, Medha Vyavaharkar, Ashok Varma Samantapudi, Kirk A. Shull, Teresa G. Stephens, and Hrishikesh Chakraborty. “Defining the rural HIV epidemic: correlations of 3 definitions--South Carolina, 2005-2011..” The Journal of Rural Health : Official Journal of the American Rural Health Association and the National Rural Health Care Association 30, no. 3 (January 2014): 275–83. https://doi.org/10.1111/jrh.12057.
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    • Vila-Nova, Camila, George L. Wehby, Fernanda C. Queirós, Hrishkesh Chakraborty, Temis M. Félix, Norman Goco, Janet Moore, et al. “Periconceptional use of folic acid and risk of miscarriage - findings of the Oral Cleft Prevention Program in Brazil..” Journal of Perinatal Medicine 41, no. 4 (July 2013): 461–66. https://doi.org/10.1515/jpm-2012-0173.
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    • Chakraborty, H. “Statistical models to estimate male-to-female HIV transmission probabilities.” Model Assisted Statistics and Applications 8, no. 2 (June 17, 2013): 135–41. https://doi.org/10.3233/MAS-130256.
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    • Lau, Carissa, Namasivayam Ambalavanan, Hrishikesh Chakraborty, Martha S. Wingate, and Waldemar A. Carlo. “Extremely low birth weight and infant mortality rates in the United States..” Pediatrics 131, no. 5 (May 2013): 855–60. https://doi.org/10.1542/peds.2012-2471.
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    • Carlo, Waldemar A., Shivaprasad S. Goudar, Omrana Pasha, Elwyn Chomba, Jan L. Wallander, Fred J. Biasini, Elizabeth M. McClure, et al. “Randomized trial of early developmental intervention on outcomes in children after birth asphyxia in developing countries..” The Journal of Pediatrics 162, no. 4 (April 2013): 705-712.e3. https://doi.org/10.1016/j.jpeds.2012.09.052.
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    • Wehby, George L., Têmis Maria Félix, Norman Goco, Antonio Richieri-Costa, Hrishikesh Chakraborty, Josiane Souza, Rui Pereira, Carla Padovani, Danilo Moretti-Ferreira, and Jeffrey C. Murray. “High dosage folic acid supplementation, oral cleft recurrence and fetal growth..” International Journal of Environmental Research and Public Health 10, no. 2 (February 4, 2013): 590–605. https://doi.org/10.3390/ijerph10020590.
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    • Banister, Carolyn E., Amy R. Messersmith, Hrishikesh Chakraborty, Yinding Wang, Lisa B. Spiryda, Saundra H. Glover, Lucia Pirisi, and Kim E. Creek. “HPV prevalence at enrollment and baseline results from the Carolina Women's Care Study, a longitudinal study of HPV persistence in women of college age..” International Journal of Women’S Health 5 (January 2013): 379–88. https://doi.org/10.2147/IJWH.S45590.
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    • Wehby, George L., Norman Goco, Danilo Moretti-Ferreira, Temis Felix, Antonio Richieri-Costa, Carla Padovani, Fernanda Queiros, et al. “Oral cleft prevention program (OCPP)..” Bmc Pediatrics 12 (November 26, 2012). https://doi.org/10.1186/1471-2431-12-184.
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    • Engmann, C., A. Garces, I. Jehan, J. Ditekemena, M. Phiri, M. Mazariegos, E. Chomba, et al. “Causes of community stillbirths and early neonatal deaths in low-income countries using verbal autopsy: an International, Multicenter Study..” Journal of Perinatology : Official Journal of the California Perinatal Association 32, no. 8 (August 2012): 585–92. https://doi.org/10.1038/jp.2011.154.
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    • Carlo, Waldemar A., Shivaprasad S. Goudar, Omrana Pasha, Elwyn Chomba, Elizabeth M. McClure, Fred J. Biasini, Jan L. Wallander, et al. “Neurodevelopmental outcomes in infants requiring resuscitation in developing countries..” The Journal of Pediatrics 160, no. 5 (May 2012): 781-5.e1. https://doi.org/10.1016/j.jpeds.2011.10.007.
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    • Wehby, George L., Eduardo E. Castilla, Norman Goco, Monica Rittler, Viviana Cosentino, Lorette Javois, Mark Kindem, et al. “The effect of systematic pediatric care on neonatal mortality and hospitalizations of infants born with oral clefts..” Bmc Pediatrics 11 (December 28, 2011). https://doi.org/10.1186/1471-2431-11-121.
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    • Kelly, Patricia J., Shivaprasad S. Goudar, Hrishikesh Chakraborty, Janet Moore, Richard Derman, Bhala Kodkany, Mrutyunjaya Bellad, Vijjaya A. Naik, Mubashir Angolkar, and Michele Bloch. “Pregnant women and children's exposure to tobacco and solid fuel smoke in southwestern India..” The Journal of Maternal Fetal & Neonatal Medicine : The Official Journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians 24, no. 7 (July 2011): 973–77. https://doi.org/10.3109/14767058.2010.537411.
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    • Engmann, C., I. Jehan, J. Ditekemena, A. Garces, M. Phiri, M. Mazariegos, E. Chomba, et al. “An alternative strategy for perinatal verbal autopsy coding: single versus multiple coders..” Tropical Medicine & International Health : Tm & Ih 16, no. 1 (January 2011): 18–29. https://doi.org/10.1111/j.1365-3156.2010.02679.x.
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    • Carlo, Waldemar A., Elizabeth M. McClure, Elwyn Chomba, Hrishikesh Chakraborty, Tyler Hartwell, Hillary Harris, Ornella Lincetto, and Linda L. Wright. “Newborn care training of midwives and neonatal and perinatal mortality rates in a developing country..” Pediatrics 126, no. 5 (November 2010): e1064–71. https://doi.org/10.1542/peds.2009-3464.
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    • Carlo, Waldemar A., Shivaprasad S. Goudar, Imtiaz Jehan, Elwyn Chomba, Antoinette Tshefu, Ana Garces, Sailajanandan Parida, et al. “High mortality rates for very low birth weight infants in developing countries despite training..” Pediatrics 126, no. 5 (November 2010): e1072–80. https://doi.org/10.1542/peds.2010-1183.
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    • Wallander, Jan L., Elizabeth McClure, Fred Biasini, Shivaprasad S. Goudar, Omrana Pasha, Elwyn Chomba, Darlene Shearer, et al. “Brain research to ameliorate impaired neurodevelopment--home-based intervention trial (BRAIN-HIT)..” Bmc Pediatrics 10 (April 30, 2010). https://doi.org/10.1186/1471-2431-10-27.
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    • Carlo, Waldemar A., Shivaprasad S. Goudar, Imtiaz Jehan, Elwyn Chomba, Antoinette Tshefu, Ana Garces, Sailajanandan Parida, et al. “Newborn-care training and perinatal mortality in developing countries..” The New England Journal of Medicine 362, no. 7 (February 2010): 614–23. https://doi.org/10.1056/NEJMsa0806033.
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    • Chakraborty, Hrishikesh, Janet Moore, and Tyler D. Hartwell. “Intracluster correlation adjustments to maintain power in cluster trials for binary outcomes..” Contemporary Clinical Trials 30, no. 5 (September 2009): 473–80. https://doi.org/10.1016/j.cct.2009.04.005.
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    • Handlos, Line Neerup, Hrishikesh Chakraborty, and Pranab Kumar Sen. “Evaluation of cluster-randomized trials on maternal and child health research in developing countries..” Tropical Medicine & International Health : Tm & Ih 14, no. 8 (August 2009): 947–56. https://doi.org/10.1111/j.1365-3156.2009.02313.x.
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    • Halloran, D. R., E. McClure, H. Chakraborty, E. Chomba, L. L. Wright, and W. A. Carlo. “Birth asphyxia survivors in a developing country..” Journal of Perinatology : Official Journal of the California Perinatal Association 29, no. 3 (March 2009): 243–49. https://doi.org/10.1038/jp.2008.192.
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    • Chakraborty, Hrishikesh, Janet Moore, Waldemar A. Carlo, Tyler D. Hartwell, and Linda L. Wright. “A simulation based technique to estimate intracluster correlation for a binary variable..” Contemporary Clinical Trials 30, no. 1 (January 2009): 71–80. https://doi.org/10.1016/j.cct.2008.07.008.
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    • Patted, Shobhana S., Shivaprasad S. Goudar, Vijaya A. Naik, Mrutyunjaya B. Bellad, Stanley A. Edlavitch, Bhalchandra S. Kodkany, Ashlesha Patel, Hrishikesh Chakraborty, Richard J. Derman, and Stacie E. Geller. “Side effects of oral misoprostol for the prevention of postpartum hemorrhage: results of a community-based randomised controlled trial in rural India..” The Journal of Maternal Fetal & Neonatal Medicine : The Official Journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians 22, no. 1 (January 2009): 24–28. https://doi.org/10.1080/14767050802452309.
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    • Chakraborty, Hrishikesh. “Community-based newborn care in Bangladesh..” Lancet (London, England) 372, no. 9649 (November 2008). https://doi.org/10.1016/s0140-6736(08)61643-8.
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    • Chomba, Elwyn, Elizabeth M. McClure, Linda L. Wright, Waldemar A. Carlo, Hrishikesh Chakraborty, and Hillary Harris. “Effect of WHO newborn care training on neonatal mortality by education..” Ambulatory Pediatrics : The Official Journal of the Ambulatory Pediatric Association 8, no. 5 (September 2008): 300–304. https://doi.org/10.1016/j.ambp.2008.04.006.
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    • Goudar, Shivaprasad S., Hrishikesh Chakraborty, Stanley A. Edlavitch, Vijaya A. Naik, M. B. Bellad, Shobhana S. Patted, Ashlesha Patel, et al. “Variation in the postpartum hemorrhage rate in a clinical trial of oral misoprostol..” The Journal of Maternal Fetal & Neonatal Medicine : The Official Journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians 21, no. 8 (August 2008): 559–64. https://doi.org/10.1080/14767050802132158.
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    • Ghosh, Pulak, Marcia D. Branco, and Hrishikesh Chakraborty. “Bivariate random effect model using skew-normal distribution with application to HIV-RNA.” Statistics in Medicine 26, no. 6 (March 15, 2007): 1255–67. https://doi.org/10.1002/sim2667.
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    • Ghosh, Pulak, Marcia D. Branco, and Hrishikesh Chakraborty. “Bivariate random effect model using skew-normal distribution with application to HIV-RNA..” Statistics in Medicine 26, no. 6 (March 2007): 1255–67. https://doi.org/10.1002/sim.2667.
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    • Chakraborty, Hrishikesh, Janet Bartz, and Shivaprasad S. Goudar. “Estimating the effect of unplanned interventions in the randomized misoprostol trial: A mixed model analysis..” International Journal of Gynaecology and Obstetrics: The Official Organ of the International Federation of Gynaecology and Obstetrics 94 Suppl 2 (November 2006). https://doi.org/10.1016/s0020-7292(06)60012-x.
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    • Derman, Richard J., Bhalchandra S. Kodkany, Shivaprasad S. Goudar, Stacie E. Geller, Vijaya A. Naik, M. B. Bellad, Shobhana S. Patted, et al. “Oral misoprostol in preventing postpartum haemorrhage in resource-poor communities: a randomised controlled trial..” Lancet (London, England) 368, no. 9543 (October 2006): 1248–53. https://doi.org/10.1016/s0140-6736(06)69522-6.
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    • Althabe, Fernando, Pierre Buekens, Eduardo Bergel, José M. Belizán, Nora Kropp, Linda Wright, Norman Goco, Nancy Moss, and Nancy for the Guidelines Trial Group. “A cluster randomized controlled trial of a behavioral intervention to facilitate the development and implementation of clinical practice guidelines in Latin American maternity hospitals: the Guidelines Trial: Study protocol [ISRCTN82417627]..” Bmc Women’S Health 5, no. 1 (April 11, 2005). https://doi.org/10.1186/1472-6874-5-4.
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    • Chakraborty, Hrishikesh, Ronald W. Helms, Pranab K. Sen, and Myron S. Cohen. “Estimating correlation by using a general linear mixed model: evaluation of the relationship between the concentration of HIV-1 RNA in blood and semen..” Statistics in Medicine 22, no. 9 (May 2003): 1457–64. https://doi.org/10.1002/sim.1505.
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    • Chakraborty, H., P. K. Sen, R. W. Helms, P. L. Vernazza, S. A. Fiscus, J. J. Eron, B. K. Patterson, R. W. Coombs, J. N. Krieger, and M. S. Cohen. “Viral burden in genital secretions determines male-to-female sexual transmission of HIV-1: a probabilistic empiric model..” Aids (London, England) 15, no. 5 (March 2001): 621–27. https://doi.org/10.1097/00002030-200103300-00012.
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    • Davis, A. T., H. Chakraborty, L. Flowers, and M. B. Mosunjac. “Cervical dysplasia in women infected with the human immunodeficiency virus (HIV): a correlation with HIV viral load and CD4+ count..” Gynecologic Oncology 80, no. 3 (March 2001): 350–54. https://doi.org/10.1006/gyno.2000.6104.
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    • Ping, L. H., M. S. Cohen, I. Hoffman, P. Vernazza, F. Seillier-Moiseiwitsch, H. Chakraborty, P. Kazembe, et al. “Effects of genital tract inflammation on human immunodeficiency virus type 1 V3 populations in blood and semen..” Journal of Virology 74, no. 19 (October 2000): 8946–52. https://doi.org/10.1128/jvi.74.19.8946-8952.2000.
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    • Seña, A. C., W. C. Miller, I. F. Hoffman, H. Chakraborty, M. S. Cohen, P. Jenkins, and K. T. McKee. “Trends of gonorrhea and chlamydial infection during 1985-1996 among active-duty soldiers at a United States Army installation..” Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America 30, no. 4 (April 2000): 742–48. https://doi.org/10.1086/313742.
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    • Fiscus, S. A., H. Chakraborty, R. Shepard, and M. Goodman. “Comparison of blood collected in acid-citrate-dextrose and EDTA for use in human immunodeficiency virus peripheral blood mononuclear cell cultures..” Journal of Clinical Microbiology 38, no. 2 (February 2000): 858–60.
    • Hobbs, M. M., P. Kazembe, A. W. Reed, W. C. Miller, E. Nkata, D. Zimba, C. C. Daly, H. Chakraborty, M. S. Cohen, and I. Hoffman. “Trichomonas vaginalis as a cause of urethritis in Malawian men..” Sexually Transmitted Diseases 26, no. 7 (August 1999): 381–87. https://doi.org/10.1097/00007435-199908000-00003.
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    • Hoffman, I. F., C. S. Jere, T. E. Taylor, P. Munthali, J. R. Dyer, J. J. Wirima, S. J. Rogerson, et al. “The effect of Plasmodium falciparum malaria on HIV-1 RNA blood plasma concentration..” Aids (London, England) 13, no. 4 (March 1999): 487–94. https://doi.org/10.1097/00002030-199903110-00007.
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    • Kohlmeier, L., M. Mendez, S. Shalnova, A. Martinchik, H. Chakraborty, and M. Kohlmeier. “Deficient dietary iron intakes among women and children in Russia: evidence from the Russian Longitudinal Monitoring Survey..” American Journal of Public Health 88, no. 4 (April 1998): 576–80. https://doi.org/10.2105/ajph.88.4.576.
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    • Tseng, M., H. Chakraborty, D. T. Robinson, M. Mendez, and L. Kohlmeier. “Adjustment of iron intake for dietary enhancers and inhibitors in population studies: bioavailable iron in rural and urban residing Russian women and children..” The Journal of Nutrition 127, no. 8 (August 1997): 1456–68. https://doi.org/10.1093/jn/127.8.1456.
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    • Mendez, M., L. Kohlmeier, H. Chakraborty, and M. Kohlmeier. “Dietary iron deficiency among Russian women and children.” Faseb Journal 10, no. 3 (December 1, 1996).

  • Book Sections

    • Chakraborty, H. “The Design and Analysis Aspects of Cluster Randomized Trials.” In Statistical Advances in the Biomedical Sciences: Clinical Trials, Epidemiology, Survival Analysis, and Bioinformatics, 67–80, 2007. https://doi.org/10.1002/9780470181218.ch5.
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