Patrick Charbonneau
Associate Professor of Chemistry
Professor Charbonneau studies soft matter. His work combines theory and simulation to understand the glass problem, protein crystallization, microphase formation, and colloidal assembly in external fields.
Current Appointments & Affiliations
- Associate Professor of Chemistry, Chemistry, Trinity College of Arts & Sciences 2015
Contact Information
- 5329 French Science, 124 Science Drive, Durham, NC 27708
- Box 90347, Durham, NC 27708-0347
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patrick.charbonneau@duke.edu
(919) 613-6261
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Charbonneau Research Group
- Background
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Education, Training, & Certifications
- Ph.D., Harvard University 2006
- B.S., McGill University (Canada) 2001
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Duke Appointment History
- Associate Professor of Physics, Physics, Trinity College of Arts & Sciences 2016 - 2019
- Associate Chair of Chemistry, Chemistry, Trinity College of Arts & Sciences 2017 - 2019
- Assistant Professor in the Department of Physics, Physics, Trinity College of Arts & Sciences 2013 - 2016
- Assistant Professor of Chemistry, Chemistry, Trinity College of Arts & Sciences 2008 - 2015
- Assistant Professor in the Department of Physics, Physics, Trinity College of Arts & Sciences 2009 - 2012
- Recognition
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In the News
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JUN 26, 2018 Duke Research Blog -
APR 13, 2018 Duke Research Blog -
NOV 2, 2017 Duke Research Blog -
MAY 30, 2017 -
APR 13, 2016 -
MAR 3, 2015 -
NOV 12, 2014 -
APR 24, 2014 -
NOV 15, 2013 Duke Research Blog -
JUL 15, 2013 Smithsonian -
APR 10, 2013 -
FEB 15, 2013
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Awards & Honors
- Top 20 Reviewers for 2012. Journal of Chemical Physics. April 9, 2013
- Alfred P. Sloan Research Fellow. Alfred P. Sloan Foundation. February 14, 2013
- Mention of Teaching Excellence. Duke University. June 1, 2012
- Open Eye Award. American Chemical Society. November 14, 2011
- Faculty Early Career Development (CAREER) Program. National Science Foundation. 2011
- Ralph E. Powe Junior Faculty Enhancement Award. Oak Ridge National Laboratory. 2009
- Research
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Selected Grants
- Soft Matter Simulation and Theory of the Crystal Assembly of Globular and Membrane Proteins awarded by National Science Foundation 2018 - 2021
- Bioinformatics and Computational Biology Training Program awarded by National Institutes of Health 2005 - 2020
- GAANN - Department of Chemistry awarded by Department of Education 2015 - 2019
- SUPPLEMENT: Cracking the Glass Problem awarded by Simons Foundation 2016 - 2019
- Continuous Acoustofluidic Confinement for the Manufacture of Functional, Entropically Ordered awarded by National Science Foundation 2014 - 2017
- CAREER: Soft Matter Self-Assembly: Protein Crystallization and Collodial Microphase Formation awarded by National Science Foundation 2011 - 2016
- Structural Biology and Biophysics Training Program awarded by National Institutes of Health 1994 - 2015
- Publications & Artistic Works
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Selected Publications
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Academic Articles
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Berthier, Ludovic, Giulio Biroli, Patrick Charbonneau, Eric I. Corwin, Silvio Franz, and Francesco Zamponi. “Gardner physics in amorphous solids and beyond..” The Journal of Chemical Physics 151, no. 1 (July 2019). https://doi.org/10.1063/1.5097175.Full Text
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Berthier, Ludovic, Patrick Charbonneau, Andrea Ninarello, Misaki Ozawa, and Sho Yaida. “Zero-temperature glass transition in two dimensions..” Nature Communications 10, no. 1 (April 3, 2019). https://doi.org/10.1038/s41467-019-09512-3.Full Text Open Access Copy
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Berthier, Ludovic, Patrick Charbonneau, and Joyjit Kundu. “Bypassing sluggishness: SWAP algorithm and glassiness in high dimensions..” Physical Review. E 99, no. 3–1 (March 2019). https://doi.org/10.1103/physreve.99.031301.Full Text Open Access Copy
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Biroli, Giulio, Patrick Charbonneau, and Yi Hu. “Dynamics around the site percolation threshold on high-dimensional hypercubic lattices..” Physical Review. E 99, no. 2–1 (February 2019). https://doi.org/10.1103/physreve.99.022118.Full Text Open Access Copy
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Charbonneau, Patrick, Eric I. Corwin, Lin Fu, Georgios Tsekenis, and Michael van der Naald. “Glassy, Gardner-like phenomenology in minimally polydisperse crystalline systems..” Physical Review. E 99, no. 2–1 (February 2019). https://doi.org/10.1103/physreve.99.020901.Full Text Open Access Copy
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Charbonneau, Patrick, Yi Hu, Archishman Raju, James P. Sethna, and Sho Yaida. “Morphology of renormalization-group flow for the de Almeida-Thouless-Gardner universality class..” Physical Review. E 99, no. 2–1 (February 2019). https://doi.org/10.1103/physreve.99.022132.Full Text Open Access Copy
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Hu, Y., L. Fu, and P. Charbonneau. “Correlation lengths in quasi-one-dimensional systems via transfer matrices.” Molecular Physics 116, no. 21–22 (November 17, 2018): 3345–54. https://doi.org/10.1080/00268976.2018.1479543.Full Text Open Access Copy
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Norman, James, Emma L. Sorrell, Yi Hu, Vaishnavi Siripurapu, Jamie Garcia, Jennifer Bagwell, Patrick Charbonneau, Sharon R. Lubkin, and Michel Bagnat. “Tissue self-organization underlies morphogenesis of the notochord..” Philos Trans R Soc Lond B Biol Sci 373, no. 1759 (September 24, 2018). https://doi.org/10.1098/rstb.2017.0320.Full Text Link to Item
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Reyes, C., L. Fu, P. P. A. Suthanthiraraj, C. E. Owens, C. W. Shields, G. P. López, P. Charbonneau, and B. J. Wiley. “The Limits of Primary Radiation Forces in Bulk Acoustic Standing Waves for Concentrating Nanoparticles.” Particle and Particle Systems Characterization 35, no. 7 (July 1, 2018). https://doi.org/10.1002/ppsc.201700470.Full Text
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Charbonneau, Benoit, Patrick Charbonneau, and Grzegorz Szamel. “A microscopic model of the Stokes-Einstein relation in arbitrary dimension..” The Journal of Chemical Physics 148, no. 22 (June 2018). https://doi.org/10.1063/1.5029464.Full Text Open Access Copy
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Hu, Yi, and Patrick Charbonneau. “Clustering and assembly dynamics of a one-dimensional microphase former..” Soft Matter 14, no. 20 (May 2018): 4101–9. https://doi.org/10.1039/c8sm00315g.Full Text Open Access Copy
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Altan, Irem, Diana Fusco, Pavel V. Afonine, and Patrick Charbonneau. “Learning about Biomolecular Solvation from Water in Protein Crystals..” The Journal of Physical Chemistry. B 122, no. 9 (March 2018): 2475–86. https://doi.org/10.1021/acs.jpcb.7b09898.Full Text
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Bruno, Andrew E., Patrick Charbonneau, Janet Newman, Edward H. Snell, David R. So, Vincent Vanhoucke, Christopher J. Watkins, Shawn Williams, and Julie Wilson. “Classification of crystallization outcomes using deep convolutional neural networks..” Plos One 13, no. 6 (January 2018). https://doi.org/10.1371/journal.pone.0198883.Full Text Open Access Copy
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Berthier, Ludovic, Patrick Charbonneau, Elijah Flenner, and Francesco Zamponi. “Origin of Ultrastability in Vapor-Deposited Glasses..” Physical Review Letters 119, no. 18 (November 2017). https://doi.org/10.1103/physrevlett.119.188002.Full Text Open Access Copy
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Berthier, Ludovic, Patrick Charbonneau, Daniele Coslovich, Andrea Ninarello, Misaki Ozawa, and Sho Yaida. “Configurational entropy measurements in extremely supercooled liquids that break the glass ceiling..” Proceedings of the National Academy of Sciences of the United States of America 114, no. 43 (October 10, 2017): 11356–61. https://doi.org/10.1073/pnas.1706860114.Full Text Open Access Copy
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Charbonneau, Patrick, Yue Cathy Li, Henry D. Pfister, and Sho Yaida. “Cycle-expansion method for the Lyapunov exponent, susceptibility, and higher moments..” Physical Review. E 96, no. 3–1 (September 18, 2017). https://doi.org/10.1103/physreve.96.032129.Full Text Open Access Copy
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Zhuang, Yuan, and Patrick Charbonneau. “Communication: Microphase equilibrium and assembly dynamics..” The Journal of Chemical Physics 147, no. 9 (September 2017). https://doi.org/10.1063/1.4996904.Full Text Open Access Copy
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Charbonneau, Patrick, and Sho Yaida. “Nontrivial Critical Fixed Point for Replica-Symmetry-Breaking Transitions..” Physical Review Letters 118, no. 21 (May 26, 2017). https://doi.org/10.1103/physrevlett.118.215701.Full Text Open Access Copy
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Pham, An T., Yuan Zhuang, Paige Detwiler, Joshua E. S. Socolar, Patrick Charbonneau, and Benjamin B. Yellen. “Phase diagram and aggregation dynamics of a monolayer of paramagnetic colloids..” Physical Review. E 95, no. 5–1 (May 12, 2017). https://doi.org/10.1103/physreve.95.052607.Full Text Open Access Copy
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Fu, Lin, Ce Bian, C Wyatt Shields, Daniela F. Cruz, Gabriel P. López, and Patrick Charbonneau. “Assembly of hard spheres in a cylinder: a computational and experimental study..” Soft Matter 13, no. 18 (May 2017): 3296–3306. https://doi.org/10.1039/c7sm00316a.Full Text Open Access Copy
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Charbonneau, P., J. Kurchan, G. Parisi, P. Urbani, and F. Zamponi. “Glass and Jamming Transitions: From Exact Results to Finite-Dimensional Descriptions.” Annual Review of Condensed Matter Physics 8 (March 31, 2017): 265–88. https://doi.org/10.1146/annurev-conmatphys-031016-025334.Full Text Open Access Copy
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Yaida, Sho, Ludovic Berthier, Patrick Charbonneau, and Gilles Tarjus. “Point-to-set lengths, local structure, and glassiness..” Physical Review. E 94, no. 3–1 (September 22, 2016). https://doi.org/10.1103/physreve.94.032605.Full Text Open Access Copy
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Zhuang, Yuan, and Patrick Charbonneau. “Recent Advances in the Theory and Simulation of Model Colloidal Microphase Formers..” The Journal of Physical Chemistry. B 120, no. 32 (August 9, 2016): 7775–82. https://doi.org/10.1021/acs.jpcb.6b05471.Full Text Open Access Copy
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Charbonneau, Patrick, Eric I. Corwin, Giorgio Parisi, Alexis Poncet, and Francesco Zamponi. “Universal Non-Debye Scaling in the Density of States of Amorphous Solids..” Physical Review Letters 117, no. 4 (July 22, 2016). https://doi.org/10.1103/physrevlett.117.045503.Full Text Open Access Copy
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Berthier, Ludovic, Patrick Charbonneau, Yuliang Jin, Giorgio Parisi, Beatriz Seoane, and Francesco Zamponi. “Growing timescales and lengthscales characterizing vibrations of amorphous solids..” Proceedings of the National Academy of Sciences of the United States of America 113, no. 30 (July 8, 2016): 8397–8401. https://doi.org/10.1073/pnas.1607730113.Full Text Open Access Copy
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Altan, Irem, Patrick Charbonneau, and Edward H. Snell. “Computational crystallization..” Archives of Biochemistry and Biophysics 602 (July 2016): 12–20. https://doi.org/10.1016/j.abb.2016.01.004.Full Text Open Access Copy
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Charbonneau, P., E. Dyer, J. Lee, and S. Yaida. “Linking dynamical heterogeneity to static amorphous order.” Journal of Statistical Mechanics: Theory and Experiment 2016, no. 7 (July 1, 2016). https://doi.org/10.1088/1742-5468/2016/07/074004.Full Text Open Access Copy
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Zhuang, Yuan, and Patrick Charbonneau. “Equilibrium Phase Behavior of the Square-Well Linear Microphase-Forming Model..” The Journal of Physical Chemistry. B 120, no. 26 (July 2016): 6178–88. https://doi.org/10.1021/acs.jpcb.6b02167.Full Text Open Access Copy
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McManus, J. J., P. Charbonneau, E. Zaccarelli, and N. Asherie. “The physics of protein self-assembly.” Current Opinion in Colloid and Interface Science 22 (April 1, 2016): 73–79. https://doi.org/10.1016/j.cocis.2016.02.011.Full Text Open Access Copy
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Fu, Lin, William Steinhardt, Hao Zhao, Joshua E. S. Socolar, and Patrick Charbonneau. “Hard sphere packings within cylinders..” Soft Matter 12, no. 9 (March 2016): 2505–14. https://doi.org/10.1039/c5sm02875b.Full Text Open Access Copy
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Tavarone, Raffaele, Patrick Charbonneau, and Holger Stark. “Kinetic Monte Carlo simulations for birefringence relaxation of photo-switchable molecules on a surface..” The Journal of Chemical Physics 144, no. 10 (March 2016). https://doi.org/10.1063/1.4943393.Full Text Open Access Copy
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Zhuang, Yuan, Kai Zhang, and Patrick Charbonneau. “Equilibrium Phase Behavior of a Continuous-Space Microphase Former..” Physical Review Letters 116, no. 9 (March 2016). https://doi.org/10.1103/physrevlett.116.098301.Full Text Open Access Copy
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Marcoux, C., T. W. Byington, Z. Qian, P. Charbonneau, and J. E. S. Socolar. “Erratum: Emergence of limit-periodic order in tiling models (Physical Review E - Statistical, Nonlinear, and Soft Matter Physics (2014) 90 (012136)).” Physical Review E 93, no. 2 (February 29, 2016). https://doi.org/10.1103/PhysRevE.93.029902.Full Text Open Access Copy
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Berthier, Ludovic, Patrick Charbonneau, and Sho Yaida. “Efficient measurement of point-to-set correlations and overlap fluctuations in glass-forming liquids..” The Journal of Chemical Physics 144, no. 2 (January 2016). https://doi.org/10.1063/1.4939640.Full Text Open Access Copy
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Fusco, Diana, and Patrick Charbonneau. “Soft matter perspective on protein crystal assembly..” Colloids and Surfaces. B, Biointerfaces 137 (January 2016): 22–31. https://doi.org/10.1016/j.colsurfb.2015.07.023.Full Text Open Access Copy
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Owens, Crystal E., C Wyatt Shields, Daniela F. Cruz, Patrick Charbonneau, and Gabriel P. López. “Highly parallel acoustic assembly of microparticles into well-ordered colloidal crystallites..” Soft Matter 12, no. 3 (January 2016): 717–28. https://doi.org/10.1039/c5sm02348c.Full Text Open Access Copy
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Tavarone, Raffaele, Patrick Charbonneau, and Holger Stark. “Phase ordering of zig-zag and bow-shaped hard needles in two dimensions..” The Journal of Chemical Physics 143, no. 11 (September 2015). https://doi.org/10.1063/1.4930886.Full Text Open Access Copy
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Charbonneau, Patrick, Yuliang Jin, Giorgio Parisi, Corrado Rainone, Beatriz Seoane, and Francesco Zamponi. “Numerical detection of the Gardner transition in a mean-field glass former..” Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics 92, no. 1 (July 21, 2015). https://doi.org/10.1103/physreve.92.012316.Full Text Open Access Copy
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Jin, Yuliang, and Patrick Charbonneau. “Dimensional study of the dynamical arrest in a random Lorentz gas..” Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics 91, no. 4 (April 27, 2015). https://doi.org/10.1103/physreve.91.042313.Full Text Open Access Copy
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Charbonneau, Patrick, Eric I. Corwin, Giorgio Parisi, and Francesco Zamponi. “Jamming criticality revealed by removing localized buckling excitations..” Physical Review Letters 114, no. 12 (March 27, 2015). https://doi.org/10.1103/physrevlett.114.125504.Full Text Open Access Copy
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Yang, Ye, Lin Fu, Catherine Marcoux, Joshua E. S. Socolar, Patrick Charbonneau, and Benjamin B. Yellen. “Phase transformations in binary colloidal monolayers..” Soft Matter 11, no. 12 (March 2015): 2404–15. https://doi.org/10.1039/c5sm00009b.Full Text Open Access Copy
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Charbonneau, Patrick, Yuliang Jin, Giorgio Parisi, and Francesco Zamponi. “Hopping and the Stokes-Einstein relation breakdown in simple glass formers..” Proceedings of the National Academy of Sciences of the United States of America 111, no. 42 (October 6, 2014): 15025–30. https://doi.org/10.1073/pnas.1417182111.Full Text Open Access Copy
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Charbonneau, P., J. Kurchan, G. Parisi, P. Urbani, and F. Zamponi. “Exact theory of dense amorphous hard spheres in high dimension. III. the full replica symmetry breaking solution.” Journal of Statistical Mechanics: Theory and Experiment 2014, no. 10 (October 1, 2014). https://doi.org/10.1088/1742-5468/2014/10/P10009.Full Text Open Access Copy
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Marcoux, Catherine, Travis W. Byington, Zongjin Qian, Patrick Charbonneau, and Joshua E. S. Socolar. “Emergence of limit-periodic order in tiling models..” Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics 90, no. 1 (July 29, 2014). https://doi.org/10.1103/physreve.90.012136.Full Text Open Access Copy
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Fusco, Diana, and Patrick Charbonneau. “Competition between monomeric and dimeric crystals in schematic models for globular proteins..” The Journal of Physical Chemistry. B 118, no. 28 (July 2014): 8034–41. https://doi.org/10.1021/jp5011428.Full Text Open Access Copy
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Charbonneau, Patrick, Jorge Kurchan, Giorgio Parisi, Pierfrancesco Urbani, and Francesco Zamponi. “Fractal free energy landscapes in structural glasses..” Nature Communications 5 (January 2014). https://doi.org/10.1038/ncomms4725.Full Text Open Access Copy
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Fusco, Diana, Jeffrey J. Headd, Alfonso De Simone, Jun Wang, and Patrick Charbonneau. “Characterizing protein crystal contacts and their role in crystallization: rubredoxin as a case study..” Soft Matter 10, no. 2 (January 2014): 290–302. https://doi.org/10.1039/C3SM52175C.Full Text Open Access Copy
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Fusco, Diana, Timothy J. Barnum, Andrew E. Bruno, Joseph R. Luft, Edward H. Snell, Sayan Mukherjee, and Patrick Charbonneau. “Statistical analysis of crystallization database links protein physico-chemical features with crystallization mechanisms..” Plos One 9, no. 7 (January 2014). https://doi.org/10.1371/journal.pone.0101123.Full Text Open Access Copy
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Charbonneau, Benoit, Patrick Charbonneau, Yuliang Jin, Giorgio Parisi, and Francesco Zamponi. “Dimensional dependence of the Stokes-Einstein relation and its violation..” The Journal of Chemical Physics 139, no. 16 (October 2013). https://doi.org/10.1063/1.4825177.Full Text Open Access Copy
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Fusco, Diana, and Patrick Charbonneau. “Crystallization of asymmetric patchy models for globular proteins in solution.” Physical Review E 88, no. 1 (July 18, 2013). https://doi.org/10.1103/PhysRevE.88.012721.Full Text Open Access Copy Link to Item
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Charbonneau, Patrick, and Gilles Tarjus. “Decorrelation of the static and dynamic length scales in hard-sphere glass formers.” Physical Review E 87, no. 4 (April 15, 2013). https://doi.org/10.1103/PhysRevE.87.042305.Full Text Open Access Copy Link to Item
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Charbonneau, Benoit, Patrick Charbonneau, and Gilles Tarjus. “Geometrical frustration and static correlations in hard-sphere glass formers..” The Journal of Chemical Physics 138, no. 12 (March 2013). https://doi.org/10.1063/1.4770498.Full Text Open Access Copy
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Zhang, K., and P. Charbonneau. “Erratum: [N]pT ensemble and finite-size-scaling study of the critical isostructural transition in the generalized exponential model of index 4.” Physical Review E Statistical, Nonlinear, and Soft Matter Physics 86, no. 6 (December 5, 2012). https://doi.org/10.1103/PhysRevE.86.069902.Full Text Open Access Copy
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Charbonneau, Patrick, Eric I. Corwin, Giorgio Parisi, and Francesco Zamponi. “Universal microstructure and mechanical stability of jammed packings..” Physical Review Letters 109, no. 20 (November 13, 2012). https://doi.org/10.1103/physrevlett.109.205501.Full Text Open Access Copy
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Zhang, Kai, and Patrick Charbonneau. “[N]pT ensemble and finite-size-scaling study of the critical isostructural transition in the generalized exponential model of index 4..” Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics 86, no. 4 Pt 1 (October 15, 2012). https://doi.org/10.1103/physreve.86.042501.Full Text Open Access Copy
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Charbonneau, Patrick, Atsushi Ikeda, Giorgio Parisi, and Francesco Zamponi. “Dimensional study of the caging order parameter at the glass transition..” Proceedings of the National Academy of Sciences of the United States of America 109, no. 35 (August 13, 2012): 13939–43. https://doi.org/10.1073/pnas.1211825109.Full Text Open Access Copy
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Zhang, Kai, and Patrick Charbonneau. “[N]pT Monte Carlo simulations of the cluster-crystal-forming penetrable sphere model..” The Journal of Chemical Physics 136, no. 21 (June 2012). https://doi.org/10.1063/1.4723869.Full Text Open Access Copy
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Bergin, Stephen M., Yu-Hui Chen, Aaron R. Rathmell, Patrick Charbonneau, Zhi-Yuan Li, and Benjamin J. Wiley. “The effect of nanowire length and diameter on the properties of transparent, conducting nanowire films..” Nanoscale 4, no. 6 (March 2012): 1996–2004. https://doi.org/10.1039/c2nr30126a.Full Text Open Access Copy
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Charbonneau, Benoit, Patrick Charbonneau, and Gilles Tarjus. “Geometrical frustration and static correlations in a simple glass former..” Physical Review Letters 108, no. 3 (January 18, 2012). https://doi.org/10.1103/physrevlett.108.035701.Full Text Open Access Copy
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Charbonneau, Patrick, Atsushi Ikeda, Giorgio Parisi, and Francesco Zamponi. “Glass transition and random close packing above three dimensions..” Physical Review Letters 107, no. 18 (October 25, 2011). https://doi.org/10.1103/physrevlett.107.185702.Full Text Open Access Copy
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Zhang, K., and P. Charbonneau. “Monte Carlo approach for studying microphases applied to the axial next-nearest-neighbor Ising and the Ising-Coulomb models.” Physical Review B Condensed Matter and Materials Physics 83, no. 21 (June 9, 2011). https://doi.org/10.1103/PhysRevB.83.214303.Full Text Open Access Copy
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Zhang, Kai, Patrick Charbonneau, and Bianca M. Mladek. “Reentrant and isostructural transitions in a cluster-crystal former..” Physical Review Letters 105, no. 24 (December 9, 2010). https://doi.org/10.1103/physrevlett.105.245701.Full Text Open Access Copy
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Jin, Yuliang, Patrick Charbonneau, Sam Meyer, Chaoming Song, and Francesco Zamponi. “Application of Edwards' statistical mechanics to high-dimensional jammed sphere packings..” Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics 82, no. 5 Pt 1 (November 18, 2010). https://doi.org/10.1103/physreve.82.051126.Full Text Open Access Copy
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Zhang, Kai, and Patrick Charbonneau. “Monte carlo study of the axial next-nearest-neighbor Ising model..” Physical Review Letters 104, no. 19 (May 13, 2010). https://doi.org/10.1103/physrevlett.104.195703.Full Text Open Access Copy
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Charbonneau, P., A. Ikeda, J. A. van Meel, and K. Miyazaki. “Numerical and theoretical study of a monodisperse hard-sphere glass former..” Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics 81, no. 4 Pt 1 (April 14, 2010). https://doi.org/10.1103/physreve.81.040501.Full Text Open Access Copy
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Meel, J. A. van, B. Charbonneau, A. Fortini, and P. Charbonneau. “Hard-sphere crystallization gets rarer with increasing dimension..” Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics 80, no. 6 Pt 1 (December 8, 2009). https://doi.org/10.1103/physreve.80.061110.Full Text Open Access Copy
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Ikeda, A., P. Charbonneau, Meel J. A. van, and K. Miyazaki. “28aQL-4 Simulation and theoretical study of glass transition of 4d hard sphere.” Meeting Abstracts of the Physical Society of Japan 64, no. 2 (August 18, 2009).
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Meel, J. A. van, D. Frenkel, and P. Charbonneau. “Geometrical frustration: a study of four-dimensional hard spheres..” Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics 79, no. 3 Pt 1 (March 3, 2009). https://doi.org/10.1103/physreve.79.030201.Full Text Open Access Copy
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Mladek, B. M., P. Charbonneau, C. N. Likos, D. Frenkel, and G. Kahl. “Multiple occupancy crystals formed by purely repulsive soft particles.” Journal of Physics Condensed Matter 20, no. 49 (December 10, 2008). https://doi.org/10.1088/0953-8984/20/49/494245.Full Text
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Charbonneau, Patrick, Chinmay Das, and Daan Frenkel. “Dynamical heterogeneity in a glass-forming ideal gas..” Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics 78, no. 1 Pt 1 (July 25, 2008). https://doi.org/10.1103/physreve.78.011505.Full Text Open Access Copy
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Mladek, Bianca M., Patrick Charbonneau, and Daan Frenkel. “Phase coexistence of cluster crystals: beyond the Gibbs phase rule..” Physical Review Letters 99, no. 23 (December 7, 2007). https://doi.org/10.1103/physrevlett.99.235702.Full Text Open Access Copy
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Charbonneau, P., and D. R. Reichman. “Dynamical heterogeneity and nonlinear susceptibility in supercooled liquids with short-range attraction..” Physical Review Letters 99, no. 13 (September 24, 2007). https://doi.org/10.1103/physrevlett.99.135701.Full Text Open Access Copy
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Charbonneau, P., and D. R. Reichman. “Phase behavior and far-from-equilibrium gelation in charged attractive colloids..” Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics 75, no. 5 Pt 1 (May 3, 2007). https://doi.org/10.1103/physreve.75.050401.Full Text Open Access Copy
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Charbonneau, P., and D. Frenkel. “Gas-solid coexistence of adhesive spheres..” The Journal of Chemical Physics 126, no. 19 (May 2007). https://doi.org/10.1063/1.2737051.Full Text Open Access Copy
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Charbonneau, P., and D. R. Reichman. “Systematic characterization of thermodynamic and dynamical phase behavior in systems with short-ranged attraction..” Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics 75, no. 1 Pt 1 (January 26, 2007). https://doi.org/10.1103/physreve.75.011507.Full Text Open Access Copy
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Reichman, D. R., and P. Charbonneau. “Mode-coupling theory.” Journal of Statistical Mechanics: Theory and Experiment, no. 5 (May 1, 2005): 267–89. https://doi.org/10.1088/1742-5468/2005/05/P05013.Full Text Open Access Copy
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Chamon, C., P. Charbonneau, L. F. Cugliandolo, D. R. Reichman, and M. Sellitto. “Out-of-equilibrium dynamical fluctuations in glassy systems..” The Journal of Chemical Physics 121, no. 20 (November 2004): 10120–37. https://doi.org/10.1063/1.1809585.Full Text Open Access Copy
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Barden, C. J., P. Charbonneau, and H. F. Schaefer. “Group 13-group 16 heterocubanes [RM(μ3-E)]4 (R = H, CH3; M = Al, Ga, In; E = O, S, Se, Te) and group 13 cubanes [RM(μ3-M)]4 (R = F, Cl, CH3, NO2; M = Al, Ga, In): A structural study.” Organometallics 21, no. 17 (August 19, 2002): 3605–9. https://doi.org/10.1021/om0202672.Full Text
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Charbonneau, P., B. Jean-Claude, and M. A. Whitehead. “Synthesis of a prodrug: A semi-empirical PM3 study.” Journal of Molecular Structure: Theochem 574, no. 1–3 (November 16, 2001): 85–91. https://doi.org/10.1016/S0166-1280(01)00586-3.Full Text
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Spivey, A. C., P. Charbonneau, T. Fekner, D. H. Hochmuth, A. Maddaford, C. Malardier-Jugroot, A. J. Redgrave, and M. A. Whitehead. “Energy barriers to rotation in axially chiral analogues of 4-(dimethylamino)pyridine.” Journal of Organic Chemistry 66, no. 22 (November 2, 2001): 7394–7401. https://doi.org/10.1021/jp015593q.Full Text Link to Item
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Spivey, A. C., P. Charbonneau, T. Fekner, D. H. Hochmuth, A. Maddaford, C. Malardier-Jugroot, A. J. Redgrave, and M. A. Whitehead. “Energy barriers to rotation in axially chiral analogues of 4-(dimethylamino)pyridine..” The Journal of Organic Chemistry 66, no. 22 (November 2001): 7394–7401. https://doi.org/10.1021/jo015593q.Full Text
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Berthier, Ludovic, Giulio Biroli, Patrick Charbonneau, Eric I. Corwin, Silvio Franz, and Francesco Zamponi. “Perspective: Gardner Physics in Amorphous Solids and Beyond.” J. Chem. Phys. 151 (n.d.). https://doi.org/10.1063/1.5097175.Full Text Link to Item
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Charbonneau, Patrick, and Joyjit Kundu. “Postponing the dynamical transition density using competing interactions,” n.d.Link to Item
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Charbonneau, Patrick. “Lecture Notes on the Statistical Mechanics of Disordered Systems,” n.d.Open Access Copy Link to Item
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Flenner, Elijah, Ludovic Berthier, Patrick Charbonneau, and Christopher J. Fullerton. “Front-mediated melting of ultrastable glasses,” n.d.Link to Item
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Khan, Amir R., Susan James, Michelle K. Quinn, Irem Altan, Patrick Charbonneau, and Jennifer J. McManus. “Temperature-dependent non-covalent protein-protein interactions explain normal and inverted solubility in a mutant of human gamma D-crystallin,” n.d.Open Access Copy Link to Item
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Conference Papers
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Charbonneau, Patrick. “Gardner transition: A new lens for glasses.” In Abstracts of Papers of the American Chemical Society, Vol. 254. AMER CHEMICAL SOC, 2017.Link to Item
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Williams, Shawn, Lisa Shewchuk, Patrick Charbonneau, and Peter Orth. “Pre-competitive collaborations and co-operation for structural biology.” In Abstracts of Papers of the American Chemical Society, Vol. 254. AMER CHEMICAL SOC, 2017.Link to Item
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Shields, Wyatt, Crystal Owens, Pearlson Austin Suthanthiraraj, Christopher Reyes, Daniela Cruz, Lin Fu, Benjamin Wiley, Patrick Charbonneau, and Gabriel Lopez. “Acoustic radiation forces for the rapid and programmable assembly of microparticles and nanoparticles.” In Abstracts of Papers of the American Chemical Society, Vol. 251. AMER CHEMICAL SOC, 2016.Link to Item
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Barnum, Timothy J., Diana Fusco, and Patrick Charbonneau. “Microscopic understanding of protein crystallization by large-scale analysis of experimental conditions.” In Abstracts of Papers of the American Chemical Society, Vol. 245. AMER CHEMICAL SOC, 2013.Link to Item
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Yellen, Benjamin, Ye Yang, Li Yu, Patrick Charbonneau, Josh Socolar, and Gabriel Lopez. “Magnetically directed assembly and dynamic manipulation of binary colloidal crystals.” In Abstracts of Papers of the American Chemical Society, Vol. 245. AMER CHEMICAL SOC, 2013.Link to Item
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Zhang, Kai, and Patrick Charbonneau. “Monte Carlo algorithms for studying microphase and cluster-crystal formers.” In Abstracts of Papers of the American Chemical Society, Vol. 243. AMER CHEMICAL SOC, 2012.Link to Item
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Fusco, Diana, and Patrick Charbonneau. “Why Proteins Crystallize (or not): The Role of Non Specific Protein Interactions.” In Biophysical Journal, 102:268a-269a. Elsevier BV, 2012. https://doi.org/10.1016/j.bpj.2011.11.1478.Full Text
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Zhang, Kai, and Patrick Charbonneau. “Monte Carlo study of the axial next-nearest-neighbor Ising model and other microphase forming systems.” In Abstracts of Papers of the American Chemical Society, Vol. 240. AMER CHEMICAL SOC, 2010.Link to Item
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Datasets
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Charbonneau, Patrick, Ludovic Berthier, Andrea Ninarello, Misaki Ozawa, and Sho Yaida. “Data and scripts from: Zero-temperature glass transition in two dimensions,” February 26, 2019. https://doi.org/10.7924/r46w9b248.Data Access
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Kundu, Joyjit, Ludovic Berthier, and Patrick Charbonneau. “Data and scripts from: Bypassing sluggishness: SWAP algorithm and glassiness in high dimensions,” February 22, 2019. https://doi.org/10.7924/r49w0dr6j.Data Access
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Charbonneau, Patrick, Sho Yaida, James P. Sethna, Archishman Raju, and Yi Hu. “Data and scripts from: Morphology of renormalization-group flow for the de Almeida–Thouless–Gardner universality class,” February 13, 2019. https://doi.org/10.7924/r4zc7wm7d.Data Access
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Charbonneau, Patrick, Georgios Tsekenis, Michael van der Naald, Lin Fu, and Eric I. Corwin. “Data and scripts from: Glassy, Gardner-like phenomenology in minimally polydisperse crystalline systems,” February 5, 2019. https://doi.org/10.7924/r4k93500n.Data Access
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Hu, Yi, Giulio Biroli, and Patrick Charbonneau. “Data and scripts from: Dynamics around the site percolation threshold on high-dimensional hypercubic lattices,” February 5, 2019. https://doi.org/10.7924/r4571cf37.Data Access
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Altan, Irem, and Patrick Charbonneau. “Data and scripts from: Obtaining soft matter models of proteins and their phase behavior,” February 4, 2019. https://doi.org/10.7924/r4ww7bs1p.Data Access
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Charbonneau, Patrick, and Yuan Zhuang. “Data and scripts from: Equilibrium phase behavior of the square-well linear microphase-forming model,” October 9, 2018. https://doi.org/10.7924/r42z16837.Data Access
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Charbonneau, Patrick, and Sho Yaida. “Data and scripts from: Nontrivial critical fixed point for replica-symmetry-breaking transitions,” October 8, 2018. https://doi.org/10.7924/r4cf9ns11.Data Access
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Charbonneau, Patrick, Eric I. Corwin, Giorgio Parisi, Alexis Poncet, and Francesco Zamponi. “Data and scripts from: Universal non-Debye scaling in the density of states of amorphous solids,” October 4, 2018. https://doi.org/10.7924/r4j67dg2z.Data Access
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Charbonneau, Patrick, Grzegorz Szamel, and Benoit Charbonneau. “Data from: A microscopic model of the Stokes-Einstein Relation in arbitrary dimension,” May 29, 2018. https://doi.org/10.7924/r4x061q6f.Data Access
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Hu, Yi, Patrick Charbonneau, and Lin Fu. “Data and scripts from: Correlation lengths in quasi-one-dimensional systems via transfer matrices,” May 29, 2018. https://doi.org/10.7924/r4mk68m43.Data Access
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Hu, Yi, and Patrick Charbonneau. “Data and scripts from: Clustering and assembly dynamics of a one-dimensional microphase former,” March 14, 2018. https://doi.org/10.7924/r41n81s8j.Data Access
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Altan, Irem, Diana Fusco, Pavel V. Afonine, and Patrick Charbonneau. “Data and Scripts from: Learning about biomolecular solvation from water in protein crystals,” February 6, 2018. https://doi.org/10.7924/r4bg2mc23.Data Access
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Charbonneau, Patrick, Ludovic Berthier, Francesco Zamponi, and Elijah Flenner. “Data and scripts from: The origin of ultrastability in vapor-deposited glasses,” September 21, 2017. https://doi.org/10.7924/G8P26W5G.Data Access
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Charbonneau, Patrick, and Sho Yaida. “Data and scripts from: Configurational entropy measurements in extremely supercooled liquids that break the glass ceiling,” September 19, 2017. https://doi.org/10.7924/G8ZG6Q9T.Data Access
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Charbonneau, Patrick, and Sho Yaida. “Data and scripts from: Cycle-expansion method for the Lyapunov exponent, susceptibility, and higher moments,” September 15, 2017. https://doi.org/10.7924/G88050N6.Data Access
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Charbonneau, Patrick, and Yuan Zhuang. “Data and scripts from: Microphase equilibrium and assembly dynamics,” August 25, 2017. https://doi.org/10.7924/G8JH3J7B.Data Access
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Charbonneau, Patrick, Paige Detwiler, An T. Pham, Yuan Zhuang, Joshua E. S. Socolar, and Benjamin B. Yellen. “Data and scripts from: Phase diagram and aggregation dynamics of a monolayer of paramagnetic colloids,” May 4, 2017. https://doi.org/10.7924/G86H4FBQ.Data Access
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Charbonneau, Patrick, and Lin Fu. “Data and scripts from: Hard sphere packings within cylinders,” March 21, 2017. https://doi.org/10.7924/G8SF2T3Z.Data Access
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Fu, Lin, and Patrick Charbonneau. “Data and scripts from: Assembly of hard spheres in a cylinder: a computational and experimental study,” March 20, 2017. https://doi.org/10.7924/G82Z13F1.Data Access
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Charbonneau, Patrick, Ludovic Berthier, Sho Yaida, and Gilles Tarjus. “Data and scripts from: Point-to-set lengths, local structure, and glassiness,” September 14, 2016. https://doi.org/10.7924/G8BG2KWP.Data Access
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Berthier, Ludovic, Patrick Charbonneau, Yuliang Jin, Giorgio Parisi, Beatriz Seoane, and Francesco Zamponi. “Data and scripts from: Growing timescales and lengthscales characterizing vibrations of amorphous solids,” July 5, 2016. https://doi.org/10.7924/G8QN64NT.Data Access
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Charbonneau, Patrick, Ethan Dyer, Jaehoon Lee, and Sho Yaida. “Data and scripts from: Linking dynamical heterogeneity to static amorphous order,” May 16, 2016. https://doi.org/10.7924/G8VD6WC5.Data Access
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- Teaching & Mentoring
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Recent Courses
- Scholarly, Clinical, & Service Activities
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Presentations & Appearances
- ESPCI, PCT-Gulliver Seminar. December 1, 2013 2013
- Leiden Lorenz Institute Seminar. December 1, 2013 2013
- Roskilde University Glass and Time Seminar. November 1, 2013 2013
- Stanford Physical Chemistry Seminar. November 1, 2013 2013
- U Penn Chemistry Seminar. November 1, 2013 2013
- Brandeis Physics Colloquium. October 1, 2013 2013
- Bucknell Physics Seminar. October 1, 2013 2013
- Caltech Chemical Physics Seminar. October 1, 2013 2013
- Oak Ridge National Lab Computational Science Seminar. October 1, 2013 2013
- Penn State Physical Chemistry Seminar. October 1, 2013 2013
- UC Berkeley Statistical Mechanics Seminar. October 1, 2013 2013
- UC Boulder Chemical Physics/Physical Chemistry Seminar. October 1, 2013 2013
- NYU Soft Condensed Matter Seminar. September 1, 2013 2013
- UCLA Chemistry and Biochemistry Seminar. September 1, 2013 2013
- UCSB Physical/Theoretical Chemistry Seminar. September 1, 2013 2013
- UW-Madison, Chemistry Seminar. September 1, 2013 2013
- 7th international Discussion Meeting on Relaxations in Complex Systems. July 1, 2013 2013
- Daan Frenkel 65 Conference. July 1, 2013 2013
- MPI for Dynamics and Self-Organization Seminar. July 1, 2013 2013
- TU Berlin, IGRTG 1524 Colloquium. July 1, 2013 2013
- CECAM: The Role of Interfaces in Crystallization. May 1, 2013 2013
- Northwestern University Chemistry Department Seminar. May 1, 2013 2013
- UIUC, Chemistry Department Seminar. May 1, 2013 2013
- University of Chicago James Franck Institute Seminar. May 1, 2013 2013
- University of Maryland Informal Statistical Physics Seminar. April 1, 2013 2013
- APS March Meeting. March 1, 2013 2013
- Washington University Physics Seminar. October 1, 2011 2011
- CBB Annual Retreat. September 1, 2011 2011
- Sphere packing and amorphous materials workshop. July 1, 2011 2011
- DLR Institute of Materials Physics in Space Seminar. June 1, 2011 2011
- Paris VI LPTMC Seminar. June 1, 2011 2011
- École Normale Supérieure Paris Physics Seminar. June 1, 2011 2011
- 4th International Soft Matter Workshop. May 1, 2011 2011
- Université du Luxembourg Physics Seminar. May 1, 2011 2011
- International Workshop on Dynamics in Viscous Liquids. March 1, 2011 2011
- Department of Chemistry, Kansas University. December 21, 2009 2009
- Department of Chemistry, McGill University. December 21, 2009 2009
- Department of Chemistry, University of North Carolina. December 21, 2009 2009
- Department of Chemistry, University of Utah. December 21, 2009 2009
- Department of Physics, North Carolina State University. December 21, 2009 2009
- Institut de Physique Theorique, CEA. December 21, 2009 2009
- How can hard (hyper)spheres form glasses?. Surrey University. February 5, 2009 2009
- How can hard (hyper)spheres form glasses?. January 13, 2009 2009
- How can hard (hyper)spheres form glasses?. January 13, 2009 2009
- Dynamical Heterogeneity in a Glass-Forming Ideal Gas. November 28, 2008 2008
- Unifying Concepts in Glass Physics IV. November 28, 2008 2008
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Service to the Profession
- 2013 APS March meeting DCP Symposium. March 2013 2013
- 2014 APS March meeting GSNP Focus session. January 10, 2013 2013
- Editorial Board Member : Scientific Reports. 2013 2013
- Co-Organizer : CTMS Multiscale Modeling Workshop. December 21, 2009 2009
- Co-Organizer : Southeastern Theoretical Chemistry Association. December 21, 2009 2009
- Instructor : MolSim (CECAM Winter School on Molecular Simulations in Amsterdam). December 21, 2009 2009
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