Scholars@Duke

• Expertise
• 

  Subject Headings

  • Algorithms
  • Algorithms; complexity
  • Approximation algorithms
  • Bayesian Statistical Decision Theory
  • Bayesian field theory
  • Bayesian inference
  • Bayesian problems; characterization of Bayes procedures
  • Bayesian statistical decision theory--Congresses
  • Computer algorithms
  • Computer algorithms--Congresses
  • Computer science--Mathematics
  • Data Science
  • Gaussian Markov random fields
  • Gaussian measures
  • Gaussian sums
  • Glaucoma
  • Glaucoma--Congresses
  • Glaucoma--Diagnosis
  • Graph algorithms
  • Information science--Statistical methods
  • Linear models (Statistics)
  • Medical protocols
  • Multilevel models (Statistics)
  • Quantitative research
  • Science--Data processing
  • Science--Statistical methods
  • Social sciences--Research--Statistical methods
  • Spatial Analysis
  • Spatial Behavior
  • Spatial Learning
  • Spatial Memory
  • Spatial Navigation
  • Spatial Processing
  • Spatial Regression
  • Spatial analysis (Statistics)
  • Spatial analysis (Statistics)--Congresses
  • Spatial models
  • Spatial processes
  • Spatial systems
  • Statistics
  • Statistics, Medical
• Research
• 

  Selected Grants

  • Development of a program to assess and treat distress in glaucoma patients using an automated EHR-derived AI algorithm awarded by National Institutes of Health 2021 - 2023
  • Objective Quantification of Neural Damage for Screening, Diagnosis and Monitoring of Glaucoma with Fundus Photographs awarded by National Institutes of Health 2020 - 2022
• Publications & Artistic Works
• 

  Selected Publications

  • Academic Articles

    • Hyland, Kelly A., Grace H. Amaden, Allison K. Diachina, Shannon N. Miller, Caroline S. Dorfman, Samuel I. Berchuck, Joseph G. Winger, et al. “mHealth Coping Skills Training for Symptom Management (mCOPE) for colorectal cancer patients in early to mid-adulthood: Study protocol for a randomized controlled trial.” Contemp Clin Trials Commun 33 (June 2023): 101126. https://doi.org/10.1016/j.conctc.2023.101126.
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    • Ahmed, Abia, Alessandro A. Jammal, Tais Estrela, Samuel I. Berchuck, and Felipe A. Medeiros. “Intraocular Pressure and Rates of Macular Thinning in Glaucoma.” Ophthalmol Glaucoma, April 8, 2023. https://doi.org/10.1016/j.ogla.2023.03.008.
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    • Engelhard, Matthew M., Ricardo Henao, Samuel I. Berchuck, Junya Chen, Brian Eichner, Darby Herkert, Scott H. Kollins, et al. “Predictive Value of Early Autism Detection Models Based on Electronic Health Record Data Collected Before Age 1 Year.” Jama Netw Open 6, no. 2 (February 1, 2023): e2254303. https://doi.org/10.1001/jamanetworkopen.2022.54303.
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    • Hong, Chuan, Michael J. Pencina, Daniel M. Wojdyla, Jennifer L. Hall, Suzanne E. Judd, Michael Cary, Matthew M. Engelhard, et al. “Predictive Accuracy of Stroke Risk Prediction Models Across Black and White Race, Sex, and Age Groups.” Jama 329, no. 4 (January 24, 2023): 306–17. https://doi.org/10.1001/jama.2022.24683.
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    • Kelleher, Sarah A., Hannah M. Fisher, Kelly Hyland, Shannon N. Miller, Grace Amaden, Allison Diachina, Alyssa S. Pittman, et al. “Hybrid-delivered cognitive behavioral symptom management and activity coaching intervention for patients undergoing hematopoietic stem cell transplant: Findings from intervention development and a pilot randomized trial.” J Psychosoc Oncol, December 8, 2022, 1–19. https://doi.org/10.1080/07347332.2022.2152519.
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    • Berchuck, Samuel I., Alessandro A. Jammal, David Page, Tamara J. Somers, and Felipe A. Medeiros. “A Framework for Automating Psychiatric Distress Screening in Ophthalmology Clinics Using an EHR-Derived AI Algorithm.” Transl Vis Sci Technol 11, no. 10 (October 3, 2022): 6. https://doi.org/10.1167/tvst.11.10.6.
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    • Pokorney, Sean D., Samuel I. Berchuck, Karen Chiswell, Jie-Lena Sun, Laine Thomas, W Schuyler Jones, Manesh R. Patel, and Jonathan P. Piccini. “Atrial branch coronary artery stenosis as a mechanism for atrial fibrillation.” Heart Rhythm 19, no. 8 (August 2022): 1237–44. https://doi.org/10.1016/j.hrthm.2021.12.020.
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    • Stagg, Brian, Eduardo B. Mariottoni, Samuel Berchuck, Alessandro Jammal, Angela R. Elam, Rachel Hess, Kensaku Kawamoto, Benjamin Haaland, and Felipe A. Medeiros. “Longitudinal visual field variability and the ability to detect glaucoma progression in black and white individuals.” Br J Ophthalmol 106, no. 8 (August 2022): 1115–20. https://doi.org/10.1136/bjophthalmol-2020-318104.
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    • Berchuck, Samuel I., Mark Janko, Felipe A. Medeiros, William Pan, and Sayan Mukherjee. “Bayesian Non-Parametric Factor Analysis for Longitudinal Spatial Surfaces.” Bayesian Analysis 17, no. 2 (June 1, 2022). https://doi.org/10.1214/20-ba1253.
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    • Jammal, Alessandro A., Samuel I. Berchuck, Eduardo B. Mariottoni, Angelo P. Tanna, Vital P. Costa, and Felipe A. Medeiros. “Blood Pressure and Glaucomatous Progression in a Large Clinical Population.” Ophthalmology 129, no. 2 (February 2022): 161–70. https://doi.org/10.1016/j.ophtha.2021.08.021.
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    • Swaminathan, Swarup S., Samuel I. Berchuck, Alessandro A. Jammal, J Sunil Rao, and Felipe A. Medeiros. “Rates of Glaucoma Progression Derived from Linear Mixed Models Using Varied Random Effect Distributions.” Translational Vision Science & Technology 11, no. 2 (February 2022): 16. https://doi.org/10.1167/tvst.11.2.16.
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    • Engelhard, Matthew, Samuel Berchuck, Jyotsna Garg, Shelley Rusincovitch, Geraldine Dawson, and Scott Kollins. “Patterns of Health Services Use Before Age 1 in Children Later Diagnosed With ADHD.” J Atten Disord 25, no. 12 (October 2021): 1639. https://doi.org/10.1177/1087054720914352.
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    • Berchuck, Samuel, Alessandro Jammal, Sayan Mukherjee, Tamara Somers, and Felipe A. Medeiros. “Impact of anxiety and depression on progression to glaucoma among glaucoma suspects.” Br J Ophthalmol 105, no. 9 (September 2021): 1244–49. https://doi.org/10.1136/bjophthalmol-2020-316617.
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    • Swaminathan, Swarup S., Alessandro A. Jammal, Samuel I. Berchuck, and Felipe A. Medeiros. “Rapid initial OCT RNFL thinning is predictive of faster visual field loss during extended follow-up in glaucoma.” American Journal of Ophthalmology 229 (September 2021): 100–107. https://doi.org/10.1016/j.ajo.2021.03.019.
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    • Gondi, Suhas, Samuel I. Berchuck, Rebecca T. Brown, Mark Hinderlie, Lauren Easton, Leah Smith, Jacob E. Berchuck, Henry S. Burden, and Caroline M. Berchuck. “A Community Partnership to House and Care for Complex Patients with Unstable Housing.” Nejm Catalyst Innovations in Care Delivery 2, no. 8 (August 2021). https://doi.org/10.1056/cat.21.0158.
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    • Johnson, Nicholas A., Alessandro A. Jammal, Samuel I. Berchuck, and Felipe A. Medeiros. “Effect of Diabetes Control on Rates of Structural and Functional Loss in Patients with Glaucoma.” Ophthalmology. Glaucoma 4, no. 2 (March 2021): 216–23. https://doi.org/10.1016/j.ogla.2020.09.013.
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    • Camm, A John, Keith A. A. Fox, Saverio Virdone, Jean-Pierre Bassand, David A. Fitzmaurice, Samuel I. Berchuck, Bernard J. Gersh, et al. “Comparative effectiveness of oral anticoagulants in everyday practice.” Heart (British Cardiac Society), February 2021, heartjnl-2020-318420. https://doi.org/10.1136/heartjnl-2020-318420.
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    • Jammal, Alessandro A., Atalie C. Thompson, Eduardo B. Mariottoni, Carla N. Urata, Tais Estrela, Samuel I. Berchuck, Henry C. Tseng, Sanjay Asrani, and Felipe A. Medeiros. “Rates of Glaucomatous Structural and Functional Change From a Large Clinical Population: The Duke Glaucoma Registry Study.” Am J Ophthalmol 222 (February 2021): 238–47. https://doi.org/10.1016/j.ajo.2020.05.019.
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    • Jammal, Alessandro A., Atalie C. Thompson, Eduardo B. Mariottoni, Tais Estrela, Leonardo S. Shigueoka, Samuel I. Berchuck, and Felipe A. Medeiros. “Impact of Intraocular Pressure Control on Rates of Retinal Nerve Fiber Layer Loss in a Large Clinical Population.” Ophthalmology 128, no. 1 (January 2021): 48–57. https://doi.org/10.1016/j.ophtha.2020.06.027.
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    • Mariottoni, Eduardo B., Alessandro A. Jammal, Samuel I. Berchuck, Leonardo S. Shigueoka, Ivan M. Tavares, and Felipe A. Medeiros. “An objective structural and functional reference standard in glaucoma.” Scientific Reports 11, no. 1 (January 2021): 1752. https://doi.org/10.1038/s41598-021-80993-3.
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    • Jammal, Alessandro A., Samuel I. Berchuck, Atalie C. Thompson, Vital P. Costa, and Felipe A. Medeiros. “The Effect of Age on Increasing Susceptibility to Retinal Nerve Fiber Layer Loss in Glaucoma.” Invest Ophthalmol Vis Sci 61, no. 13 (November 2, 2020): 8. https://doi.org/10.1167/iovs.61.13.8.
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    • Thompson, Atalie C., Alessandro A. Jammal, Samuel I. Berchuck, Eduardo B. Mariottoni, Zhichao Wu, Fabio B. Daga, Nara G. Ogata, Carla N. Urata, Tais Estrela, and Felipe A. Medeiros. “Comparing the Rule of 5 to Trend-based Analysis for Detecting Glaucoma Progression on OCT.” Ophthalmology. Glaucoma 3, no. 6 (November 2020): 414–20. https://doi.org/10.1016/j.ogla.2020.06.005.
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    • Engelhard, Matthew M., Samuel I. Berchuck, Jyotsna Garg, Ricardo Henao, Andrew Olson, Shelley Rusincovitch, Geraldine Dawson, and Scott H. Kollins. “Health system utilization before age 1 among children later diagnosed with autism or ADHD.” Sci Rep 10, no. 1 (October 19, 2020): 17677. https://doi.org/10.1038/s41598-020-74458-2.
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    • Estrela, Tais, Alessandro A. Jammal, Eduardo B. Mariottoni, Carla N. Urata, Nara G. Ogata, Samuel I. Berchuck, and Felipe A. Medeiros. “The Relationship Between Asymmetries of Corneal Properties and Rates of Visual Field Progression in Glaucoma Patients.” J Glaucoma 29, no. 10 (October 2020): 872–77. https://doi.org/10.1097/IJG.0000000000001625.
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    • Armstrong, Sarah C., McAllister Windom, Nathan A. Bihlmeyer, Jennifer S. Li, Svati H. Shah, Mary Story, Nancy Zucker, et al. “Rationale and design of "Hearts & Parks": study protocol for a pragmatic randomized clinical trial of an integrated clinic-community intervention to treat pediatric obesity.” Bmc Pediatr 20, no. 1 (June 26, 2020): 308. https://doi.org/10.1186/s12887-020-02190-x.
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    • Engelhard, Matthew, Samuel Berchuck, Joshua D’Arcy, and Ricardo Henao. “Neural Conditional Event Time Models,” April 3, 2020.
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    • Thompson, Atalie C., Alessandro A. Jammal, Samuel I. Berchuck, Eduardo B. Mariottoni, and Felipe A. Medeiros. “Assessment of a Segmentation-Free Deep Learning Algorithm for Diagnosing Glaucoma From Optical Coherence Tomography Scans.” Jama Ophthalmol 138, no. 4 (April 1, 2020): 333–39. https://doi.org/10.1001/jamaophthalmol.2019.5983.
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    • Jammal, Alessandro A., Atalie C. Thompson, Eduardo B. Mariottoni, Samuel I. Berchuck, Carla N. Urata, Tais Estrela, Susan M. Wakil, Vital P. Costa, and Felipe A. Medeiros. “Human Versus Machine: Comparing a Deep Learning Algorithm to Human Gradings for Detecting Glaucoma on Fundus Photographs.” Am J Ophthalmol 211 (March 2020): 123–31. https://doi.org/10.1016/j.ajo.2019.11.006.
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    • Mariottoni, Eduardo B., Shounak Datta, David Dov, Alessandro A. Jammal, Samuel I. Berchuck, Ivan M. Tavares, Lawrence Carin, and Felipe A. Medeiros. “Artificial Intelligence Mapping of Structure to Function in Glaucoma.” Transl Vis Sci Technol 9, no. 2 (March 2020): 19. https://doi.org/10.1167/tvst.9.2.19.
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    • Urata, Carla N., Eduardo B. Mariottoni, Alessandro A. Jammal, Nara G. Ogata, Atalie C. Thompson, Samuel I. Berchuck, Tais Estrela, and Felipe A. Medeiros. “Comparison of Short- And Long-Term Variability in Standard Perimetry and Spectral Domain Optical Coherence Tomography in Glaucoma.” Am J Ophthalmol 210 (February 2020): 19–25. https://doi.org/10.1016/j.ajo.2019.10.034.
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    • Mariottoni, Eduardo B., Alessandro A. Jammal, Carla N. Urata, Samuel I. Berchuck, Atalie C. Thompson, Tais Estrela, and Felipe A. Medeiros. “Quantification of Retinal Nerve Fibre Layer Thickness on Optical Coherence Tomography with a Deep Learning Segmentation-Free Approach.” Sci Rep 10, no. 1 (January 15, 2020): 402. https://doi.org/10.1038/s41598-019-57196-y.
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    • Berchuck, Samuel I., Sayan Mukherjee, and Felipe A. Medeiros. “Estimating Rates of Progression and Predicting Future Visual Fields in Glaucoma Using a Deep Variational Autoencoder.” Sci Rep 9, no. 1 (December 2, 2019): 18113. https://doi.org/10.1038/s41598-019-54653-6.
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    • Susanna, Bianca N., Nara G. Ogata, Alessandro A. Jammal, Carolina N. Susanna, Samuel I. Berchuck, and Felipe A. Medeiros. “Corneal Biomechanics and Visual Field Progression in Eyes with Seemingly Well-Controlled Intraocular Pressure.” Ophthalmology 126, no. 12 (December 2019): 1640–46. https://doi.org/10.1016/j.ophtha.2019.07.023.
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    • Berchuck, S. I., J. C. Mwanza, and J. L. Warren. “Diagnosing Glaucoma Progression With Visual Field Data Using a Spatiotemporal Boundary Detection Method.” Journal of the American Statistical Association 114, no. 527 (July 3, 2019): 1063–74. https://doi.org/10.1080/01621459.2018.1537911.
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    • Berchuck, S. I., J. C. Mwanza, and J. L. Warren. “A spatially varying change points model for monitoring glaucoma progression using visual field data.” Spatial Statistics 30 (April 1, 2019): 1–26. https://doi.org/10.1016/j.spasta.2019.02.001.
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    • Berchuck, Samuel I., Jean-Claude Mwanza, Angelo P. Tanna, Donald L. Budenz, and Joshua L. Warren. “Improved Detection of Visual Field Progression Using a Spatiotemporal Boundary Detection Method.” Scientific Reports 9, no. 1 (March 2019): 4642. https://doi.org/10.1038/s41598-018-37127-z.
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    • Beamon, Carmen, Laura Carlson, Brooke Rambally, Samuel Berchuck, Margaret Gearhart, Catherine Hammett-Stabler, and Robert Strauss. “Predicting neonatal respiratory morbidity by lamellar body count and gestational age.” Journal of Perinatal Medicine 44, no. 6 (August 2016): 677–83. https://doi.org/10.1515/jpm-2014-0310.
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    • Berchuck, Samuel I., Joshua L. Warren, Amy H. Herring, Kelly R. Evenson, Kari A. B. Moore, Yamini K. Ranchod, and Ana V. Diez-Roux. “Spatially Modelling the Association Between Access to Recreational Facilities and Exercise: The 'Multi-Ethnic Study of Atherosclerosis'.” Journal of the Royal Statistical Society. Series A, (Statistics in Society) 179, no. 1 (January 2016): 293–310. https://doi.org/10.1111/rssa.12119.
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    • Park, J. K., S. Singh, S. Berchuck, G. Couchman, and W. Meyer. “Aneuploidy prevalence is no different between embryos biopsied on day 5 vs day 6.” Fertility and Sterility 100, no. 3 (September 2013): S197–S197. https://doi.org/10.1016/j.fertnstert.2013.07.1344.
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    • Meyer, W. R., A. Oddone, S. Berchuck, and J. K. Park. “Intrauterine insemination pregnancy rates do not differ between physicians and nurses.” Fertility and Sterility 98, no. 3 (September 2012): S73–S73. https://doi.org/10.1016/j.fertnstert.2012.07.263.
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  • Reports

    • Berchuck, S., D. Pathman, G. Holmes, and J. Terry. “Assessing Shifts in Outpatient Visits to Physicians of Other Specialties in Rural Areas with Shortages of Cardiologists and Gastroenterologists: A Preliminary Analysis,” April 2015.
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  • Conference Papers

    • Shi, Alyssa, Samuel I. Berchuck, Alessandro A. Jammal, Geetika Singh, Sydney Hunt, Kimberly Roche, Sayan Mukherjee, and Felipe A. Medeiros. “Identifying Risk Factors for Blindness From Glaucoma at First Presentation to a Tertiary Clinic.” In Am J Ophthalmol, 250:130–37, 2023. https://doi.org/10.1016/j.ajo.2023.02.006.
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    • Berchuck, Samuel, Alessandro A. Jammal, Kevin Weinfurt, David Page, Tamara Somers, and Felipe A. Medeiros. “A framework for automating psychosocial distress screening in ophthalmology clinics using an EHR-derived AI algorithm.” In Investigative Ophthalmology & Visual Science, Vol. 63, 2022.
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    • Naithani, Rizul, Alessandro A. Jammal, Samuel Berchuck, Tais Estrela, Ndidi-Amaka Onyekaba, Asmaa Youssif, Henry Tseng, and Felipe Medeiros. “Assessing Gender- and Race-based Differential Item Functioning with the National Eye Institute Visual Functioning Questionnaire for Patients with Glaucoma.” In Investigative Ophthalmology & Visual Science, Vol. 63, 2022.
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    • Ahmed, Abia, Alessandro A. Jammal, Samuel Berchuck, and Felipe A. Medeiros. “Intraocular Pressure and Rates of Macular Thickness Thinning in Subjects with Glaucoma.” In Investigative Ophthalmology & Visual Science, Vol. 62, 2021.
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    • Baek, Youngsoo, Samuel Berchuck, Alessandro A. Jammal, Ayan Mukherjee, and Felipe A. Medeiros. “Discriminating between healthy and glaucomatous eyes using a Bayesian macular deviation map.” In Investigative Ophthalmology & Visual Science, Vol. 62, 2021.
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    • Subramanian, V., M. Engelhard, S. Berchuck, L. Chen, R. Henao, and L. Carin. “SpanPredict: Extraction of Predictive Document Spans with Neural Attention.” In Naacl Hlt 2021  2021 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, Proceedings of the Conference, 5234–58, 2021.
    • Berchuck, Samuel, Alessandro A. Jammal, Eduardo Bicalho Mariottoni, Sayan Mukherjee, and Felipe A. Medeiros. “The relationship between concomitant mental health disorders and disease severity among glaucoma patients.” In Investigative Ophthalmology & Visual Science, Vol. 61, 2020.
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    • Jammal, Alessandro A., Eduardo Bicalho Mariottoni, Atalie C. Thompson, Samuel Berchuck, Tais Estrela, Leonardo Shigueoka, and Felipe A. Medeiros. “The Effect of Intraocular Pressure Control on Rates of Glaucomatous Structural Loss in a Large Clinical Population.” In Investigative Ophthalmology & Visual Science, Vol. 61, 2020.
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    • Mariottoni, Eduardo Bicalho, Shounak Datta, David Dov, Alessandro Adad Jammal, Samuel Berchuck, Ivan Tavares, Lawrence Carin, and Felipe Medeiros. “A Deep Learning-Based Mapping of Structure to Function in Glaucoma.” In Investigative Ophthalmology & Visual Science, Vol. 61, 2020.
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    • Stagg, Brian, Eduardo Mariottoni, Samuel Berchuck, Alessandro A. Jammal, Rachel Hess, Kensaku Kawamoto, Ben Haaland, and Felipe A. Medeiros. “The association between race and longitudinal visual field variability.” In Investigative Ophthalmology & Visual Science, Vol. 61, 2020.
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    • Fox, K. A. A., S. Berchuck, A. J. Camm, J. -. P. Bassand, D. A. Fitzmaurice, B. J. Gersh, S. Z. Goldhaber, et al. “Evaluation of the effect of oral anticoagulants on all-cause mortality within 3 months of the diagnosis of atrial fibrillation: results from the GARFIELD-AF prospective registry.” In European Heart Journal, 39:609–10. OXFORD UNIV PRESS, 2018.
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    • Pokorney, Sean, Samuel Berchuck, Karen Chiswell, Linda Shaw, Laine Thomas, William Jones, Manesh Patel, and Jonathan Piccini. “ATRIAL ISCHEMIA AS A MECHANISM OF ATRIAL FIBRILLATION.” In Journal of the American College of Cardiology, 71:A372–A372. Elsevier BV, 2018. https://doi.org/10.1016/s0735-1097(18)30913-6.
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    • Berchuck, S. “Incorporating both space and place in medical geography using Bayesian hierarchical spatial modeling,” 2015.
    • Beamon, Carmen, Laura Carlson, Samuel Berchuck, Brooke Rambally, Margaret Gearhart, Catherine Hammett-Stabler, and Robert Strauss. “132: Predicting neonatal respiratory morbidity using lamellar body counts and gestational age.” In American Journal of Obstetrics and Gynecology, 210:S79–80. Elsevier BV, 2014. https://doi.org/10.1016/j.ajog.2013.10.165.
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    • Berchuck, S. “A Spatially Varying Change Point Model for Determining Glaucoma Progression Using Visual Field Data,” 61–61, n.d.
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    • Berchuck, S. “Bayesian spatial boundary detection for diagnosing progression of glaucoma using visual field data,” n.d.
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  • Software

    • Berchuck, S. “spCP: Spatially Varying Change Points With Spatiotemporal Slopes and Intersects,” 2018.
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    • Berchuck, S. “womblR: Spatiotemporal Boundary Detection Model for Areal Unit Data,” 2017.
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  • Preprints

    • Berchuck, Samuel I., Mark Janko, Felipe A. Medeiros, William Pan, and Sayan Mukherjee. “Bayesian Non-Parametric Factor Analysis for Longitudinal Spatial Surfaces,” November 11, 2019.
       Link to Item
    • Berchuck, Samuel I., Felipe A. Medeiros, and Sayan Mukherjee. “Scalable Modeling of Spatiotemporal Data using the Variational Autoencoder: an Application in Glaucoma,” August 24, 2019.
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• Teaching & Mentoring
• 

  Recent Courses

  • STA 102L: Introductory Biostatistics 2021
• Scholarly, Clinical, & Service Activities
• 

  Outreach & Engaged Scholarship

  • Data+ Project Leader. Data+. 2020  2020

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