Shannon Jones McCall
Associate Professor of Pathology
As an anatomic pathologist, I am involved in numerous translational cancer research projects that rely on the study of human biological samples. I am the director of the Duke BioRepository & Precision Pathology Center, a shared resource of the School of Medicine and the Duke Cancer Institute. My own area of research interest is gastrointestinal tract metaplasias and their relationship to carcinogenesis, particularly in the upper GI tract.
Current Appointments & Affiliations
- Associate Professor of Pathology, Pathology, Clinical Science Departments 2016
- Assistant Professor in Surgery, Surgery, Surgical Sciences, Surgery 2016
- Member of the Duke Cancer Institute, Duke Cancer Institute, Institutes and Centers 2017
Contact Information
- Dept Of Pathology Box 3712, Room 327C Davison Building, Durham, NC 27710
- Duke Box 3712, Room 327C Davison Bldg, Durham, NC 27710
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(919) 684-2531
- Background
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Education, Training, & Certifications
- Resident, Pathology, Duke University 2000 - 2005
- M.D., Duke University 2000
- B.S., North Carolina State University 1996
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Duke Appointment History
- Assistant Professor of Pathology, Pathology, Clinical Science Departments 2010 - 2016
- Member of the Duke Cancer Institute, Duke Cancer Institute, Institutes and Centers 2000 - 2016
- Adjunct Assistant Professor in the Department of Pathology, Pathology, Clinical Science Departments 2007 - 2010
- Adjunct Assistant Professor in the Department of Pathology, Pathology, Clinical Science Departments 2006 - 2007
- Assistant Professor of Pathology, Pathology, Clinical Science Departments 2006
- Associate in the Department of Pathology, Pathology, Clinical Science Departments 2005 - 2006
- Instructor, Temporary of Pathology, Pathology, Clinical Science Departments 2005
- Recognition
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In the News
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JUL 31, 2017 Medical Physics Web -
JAN 4, 2017 -
DEC 21, 2016 -
DEC 14, 2016 -
MAR 1, 2015 -
SEP 4, 2014 -
JUL 24, 2014 -
JUL 23, 2014 -
JUN 9, 2014 -
APR 25, 2014
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Awards & Honors
- Fellowship, Duke Clinical Leadership Program. Chancellor of Duke Medicine. 2016
- Bernard Fetter Faculty Teaching Award. Department of Pathology. 2015
- William D. Bradford Resident Teaching Award. Department of Pathology. 2005
- Alpha Omega Alpha, Medical Honor Society Induction. Alpha Omega Alpha. 2004
- Young Leader Award. College of American Pathologists. 2004
- Tau Beta Pi Engineering Honor Society Induction. Tau Beta Pi. 1994
- Expertise
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Subject Headings
- Ampulla of Vater
- Apoptosis
- Bevacizumab
- Bile Ducts
- Biological Markers
- Biopsy
- Biopsy, Needle
- Cell Differentiation
- Cell Line
- Cell Nucleus
- Cell Proliferation
- Cell Survival
- Cells, Cultured
- Colorectal Neoplasms
- Colorectal Neoplasms, Hereditary Nonpolyposis
- Cytochrome P-450 CYP2E1
- Endocytosis
- Epithelial Cells
- Epithelial-Mesenchymal Transition
- Gene Deletion
- Gene Expression Profiling
- Gene Expression Regulation
- Gene Expression Regulation, Developmental
- Gene Expression Regulation, Neoplastic
- Genetic Predisposition to Disease
- Hedgehog Proteins
- Homeodomain Proteins
- Humans
- Hydroxyproline
- Immunohistochemistry
- Kruppel-Like Transcription Factors
- Lasers
- Mesenchymal Stromal Cells
- Mesoderm
- Microdissection
- Mutation
- Nuclear Proteins
- Oligonucleotides, Antisense
- Oligoribonucleotides, Antisense
- Oncogenes
- Organoplatinum Compounds
- Pancreaticoduodenectomy
- Pancreatitis
- Pilot Projects
- Prognosis
- Protein Isoforms
- Proteome
- Proto-Oncogene Proteins
- Proto-Oncogene Proteins B-raf
- Pyrimidines
- RNA, Messenger
- Receptors, Cell Surface
- Recombinant Proteins
- Reverse Transcriptase Polymerase Chain Reaction
- Signal Transduction
- Stromal Cells
- Thiazoles
- Tissue Donors
- Tumor Markers, Biological
- Tumor Necrosis Factor-alpha
- Wnt Proteins
- Xenograft Model Antitumor Assays
- ras Proteins
- Research
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Selected Grants
- Mutation analysis of pap smear samples and associated tissues for ovarian cancer diagnostics awarded by Genendeavor LLC 2017 - 2022
- Characterization of Tumor Immunobiological Factors that Promote Lymphovascular Invasion and Dissemination in Locally Advanced Breast Cancer awarded by Department of Defense 2017 - 2020
- Targeting differential apoptosis regulation in triple negative breast cancer awarded by Department of Defense 2016 - 2019
- Preoperative Breast Radiotherapy: A Tool to Provide Individualized and Biologically-Based Radiation Therapy awarded by Gateway for Cancer Research 2015 - 2019
- ROCHE DIAGNOSTICS CORPORATION WORKFLOW ANALYSIS AGREEMENT awarded by Roche Diagnostics 2018 - 2019
- Lung Squamous Cell Carcinoma: Validation of Molecular Signatures of Prognosis awarded by University of Colorado - Denver 2012 - 2017
- The genetics of hepatosplenic T cell lymphoma awarded by National Institutes of Health 2015 - 2017
- The effect of pre-analytical variables on the ability to detect PD-L1 by immunohistochemical staining of placental tissu awarded by Merck 2014 - 2015
- TCGA Contract awarded by SAIC-Frederick, Inc. 2013 - 2014
- Publications & Artistic Works
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Selected Publications
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Book Sections
- Nakhleh, RE. "Error Reduction and Prevention in Surgical Pathology." Springer, March 3, 2015.
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Conference Papers
- Patierno, B, Glover, W, Ribar, T, Kittles, R, Foo, W-C, McCall, S, Huang, J, George, D, Freedman, J, Patierno, S, Wood, K, and Hsu, D. "Establishment of African American prostate cancer patient-derived primary cell lines and xenografts." 10th AACR Conference on the Science of Cancer Health Disparities in Racial/Ethnic Minorities and the Medically Underserved. Atlanta, GA. September 25, 2017 - September 28, 2017.: AMER ASSOC CANCER RESEARCH, July 1, 2018. Link to Item
- Nacouzi, D, Spencer, J, Zhao, B, Leung, C, McCall, S, Greenberg, J, and Kapadia, A. "Smarter Cancer Detection Through Machine-Learning Applied to High-Resolution Diffraction Tissue Scanning." 60th Annual Meeting of the American-Association-of-Physicists-in-Medicine. Nashville, TN. July 29, 2018 - August 2, 2018.: WILEY, June 1, 2018. Link to Item
- Schild, M, Xu, L, Suzuki, A, Cardona, D, Clinton, L, McCall, S, Pendse, A, Zhang, X, Abdelmalek, MF, Diehl, AM, and Guy, C. "Sonic Hedgehog Immunohistochemistry Improves Inter-observer Agreement for Ballooning and the Diagnosis of Nonalcoholic Steatohepatitis (NASH) among Less Experienced Liver Pathologists." 107th Annual Meeting of the United-States-and-Canadian-Academy-of-Pathology (USCAP). Vancouver, CANADA. March 17, 2018 - March 23, 2018.: NATURE PUBLISHING GROUP, March 1, 2018. Link to Item
- Xu, L, Zhao, L, Hemmerich, A, Ferguson, L, Guy, C, McCall, S, Cardona, D, Hart, J, and Zhang, X. "MFAP5 Distinguishes Between Benign Desmoplasia-Like Reaction and True Desmoplasia in Invasive Adenocarcinoma of the Gallbladder." 107th Annual Meeting of the United-States-and-Canadian-Academy-of-Pathology (USCAP). Vancouver, CANADA. March 17, 2018 - March 23, 2018.: NATURE PUBLISHING GROUP, March 1, 2018. Link to Item
- Spencer, J, Carter, J, Buxton, C, Leung, C, McCall, S, Greenberg, J, and Kapadia, A. "BEST IN PHYSICS (IMAGING): X-Ray Diffraction Spectral Imaging for Breast Cancer Assessment." June 2017. Link to Item
- Harrison, G, Hemmerich, A, Cardona, D, Guy, C, McCall, S, and Zhang, X. "TFE3 and SOX11 as Novel Diagnostic Markers for Solid Pseudopapillary Neoplasms." February 2017. Link to Item
- Harrison, G, Hemmerich, A, Cardona, D, Guy, C, McCall, S, and Zhang, X. "TFE3 and SOX11 as Novel Diagnostic Markers for Solid Pseudopapillary Neoplasms." February 2017. Link to Item
- Shaar, M, Guy, C, McCall, S, Cardona, D, and Zhang, X. "Metastatic Renal Cell Carcinoma Presenting as a Solitary Subcentimeter Gastroesophageal Mucosal Polyp: Report of 5 Cases." February 2017. Link to Item
- Shaar, M, Suzuki, A, Poster, C, de Ridder, G, Zhang, X, Cronin, MK, McCall, S, Cardona, D, Abdelmalek, M, Pizzo, S, Jiang, XS, Lefaivre, M, and Guy, C. "Serum Amyloid A (SAA) and C-Reactive Protein (CRP) Are Commonly Positive in Hepatocellular Carcinoma and Expression Levels Stratify According to Etiology and the Absence of Cirrhosis." February 2017. Link to Item
- Shaar, M, Suzuki, A, Poster, C, de Ridder, G, Zhang, X, Cronin, MK, McCall, S, Cardona, D, Abdelmalek, M, Pizzo, S, Jiang, XS, Lefaivre, M, and Guy, C. "Serum Amyloid A (SAA) and C-Reactive Protein (CRP) Are Commonly Positive in Hepatocellular Carcinoma and Expression Levels Stratify According to Etiology and the Absence of Cirrhosis." February 2017. Link to Item
- Sham, M, Guy, C, McCall, S, Cardona, D, and Zhang, X. "Metastatic Renal Cell Carcinoma Presenting as a Solitary Subcentimeter Gastroesophageal Mucosal Polyp: Report of 5 Cases." February 2017. Link to Item
- Spencer, JR, Carter, JE, Leung, CK, McCall, SJ, Greenberg, JA, and Kapadia, AJ. "Coded aperture coherent scatter spectral imaging for assessment of breast cancers: An ex-vivo demonstration." January 1, 2017. Full Text
- Harrison, G, Hemmerich, A, Guy, C, McCall, SJ, Cardona, DM, and Zhang, X. "Transcription Factor E3 as a Novel Diagnostic Marker for Solid Pseudopapillary Neoplasm." February 2016. Link to Item
- Harrison, G, Hemmerich, A, Guy, C, McCall, SJ, Cardona, DM, and Zhang, X. "Transcription Factor E3 as a Novel Diagnostic Marker for Solid Pseudopapillary Neoplasm." February 2016. Link to Item
- Morris, RE, Albanese, KE, Lakshmanan, MN, McCall, SJ, Greenberg, JA, and Kapadia, AJ. "Validation of coded aperture coherent scatter spectral imaging for normal and neoplastic breast tissues via surgical pathology." January 1, 2016. Full Text
- Poster, C, Gustafson, K, Furth, E, McCall, S, Cardona, D, Zhang, X, Lagoo, A, Lefaivre, M, and Guy, C. "Diagnosing Hepatocellular Carcinoma With Immunohistochemistry: Quantitative Assessment of Performance Characteristics for gamma-H2AX, Glypican-3, Clathrin Heavy Chain, and Glutamine Synthetase." February 2015. Link to Item
- Poster, C, Gustafson, K, Furth, E, McCall, S, Cardona, D, Zhang, X, Lagoo, A, Lefaivre, M, and Guy, C. "Diagnosing Hepatocellular Carcinoma With Immunohistochemistry: Quantitative Assessment of Performance Characteristics for gamma-H2AX, Glypican-3, Clathrin Heavy Chain, and Glutamine Synthetase." February 2015. Link to Item
- Zessin, AS, Randall, A, McCall, S, Datto, MB, and Hsu, SD. "Identification and validation of actionable mutations in solid tumors." May 20, 2014. Link to Item
- Layne, AC, Cummings, TJ, Guy, CD, Cardona, DM, Bentley, RC, Shealy, MJ, Zhang, X, and McCall, SJ. "TTF-1 Is Expressed in a Subset of Esophageal Adenocarcinomas." February 2014. Link to Item
- Layne, AC, Cummings, TJ, Guy, CD, Cardona, DM, Bentley, RC, Shealy, MJ, Zhang, X, and McCall, SJ. "TTF-1 Is Expressed in a Subset of Esophageal Adenocarcinomas." February 2014. Link to Item
- Shealy, MJ, de Ridder, GG, McCall, SJ, Guy, CD, Zhang, X, and Cardona, DM. "The Role of Eosinophils and Neuroendocrine Cell Nests in the Assessment of Gastrointestinal Biopsies in Bone Marrow Transplant Patients." February 2014. Link to Item
- Shealy, MJ, de Ridder, GG, McCall, SJ, Guy, CD, Zhang, X, and Cardona, DM. "The Role of Eosinophils and Neuroendocrine Cell Nests in the Assessment of Gastrointestinal Biopsies in Bone Marrow Transplant Patients." February 2014. Link to Item
- Zhang, X, Zhao, L, Guy, CD, McCall, SJ, Cardona, DM, Burbridge, RA, Garman, KS, Branch, MS, Siddiqui, U, Xiao, S-Y, Waxman, I, and Hart, J. "Delayed Specimen Collection May Artifactually Damage the Mucosal Surface in Barrett's EMR Specimens." February 2014. Link to Item
- Zhang, X, Zhao, L, Guy, CD, McCall, SJ, Cardona, DM, Burbridge, RA, Garman, KS, Branch, MS, Siddiqui, U, Xiao, S-Y, Waxman, I, and Hart, J. "Delayed Specimen Collection May Artifactually Damage the Mucosal Surface in Barrett's EMR Specimens." February 2014. Link to Item
- Zhong, J, Palta, M, Willett, CG, McCall, SJ, McSherry, F, Uronis, HE, Tyler, DS, and Czito, BG. "Patterns of Failure for Stage I Ampulla of Vater Adenocarcinoma: A Single Institutional Experience." October 1, 2013. Full Text Link to Item
- Strickler, JH, McCall, S, Nixon, AB, Pang, H, Rushing, C, Arrowood, C, Haley, S, Meadows, K, and Hurwitz, H. "Correlation of Src activation with response to dasatinib, capecitabine, oxaliplatin, and bevacizumab in advanced solid tumors." May 20, 2013. Link to Item
- Czito, BG, Willett, C, Palta, M, McCall, S, Gee, N, Hurwitz, H, Coleman, RE, Zafar, Y, Kennedy-Newton, P, and Uronis, H. "A phase I/II study of capecitabine (Cape), oxaliplatin (Ox), panitumumab (Pmab), and external beam radiation therapy (RT) for patients with esophagogastric carcinoma (EC)." February 2012. Full Text
- Guy, CD, Suzuki, A, Burchette, JL, Brunt, EM, Abelmalek, MF, Cardona, D, McCall, SJ, Unlap, A, Belt, P, Wilson, L, Ferrell, LD, and Diehl, AM. "A Novel Immunohiostochemical Staining Pattern for Keratin 8/18 Plus Ubiquitin in Nonalcoholic Fatty Liver Disease Is Associated with Increased Disease Severity and Advanced Fibrosis." February 2011. Link to Item
- Guy, CD, Suzuki, A, Burchette, JL, Brunt, EM, Abelmalek, MF, Cardona, D, McCall, SJ, Unlap, A, Belt, P, Wilson, L, Ferrell, LD, and Diehl, AM. "A Novel Immunohiostochemical Staining Pattern for Keratin 8/18 Plus Ubiquitin in Nonalcoholic Fatty Liver Disease Is Associated with Increased Disease Severity and Advanced Fibrosis." February 2011. Link to Item
- Fleig, SV, Yang, L, Huang, J, Mccall, SJ, Jung, Y, Vandongen, HM, Omenetti, A, Sicklick, JK, Li, Y-X, and Diehl, AM. "Qualitative and quantitative differences in response to liver injury in OB/OB mice." April 2007. Link to Item
- Yamaguchi, K, Yang, L, McCall, S, Huang, J, Yu, XX, Pandey, SK, Bhanot, S, Monia, BP, Li, Y-X, and Diehl, AM. "DGAT1 ASO treatment reduces hepatic fibrosis without improving hepatic steatosis in DB/DB mice fed methionine choline deficient diets." October 2006. Link to Item
- Yamaguchi, K, Yang, L, McCall, S, Huang, J, Yu, XX, Pandey, SK, Hanot, S, Monia, BP, Li, Y-X, and Diehl, AM. "DGAT2 aso treatment improves hepatic steatosis, but not fibrosis in DB/DB mice fed methionine choline deficient diets." October 2006. Link to Item
- Suzuki, A, McCall, S, Huang, JW, Qi, Y, Zdanowicz, M, Sicklick, J, Camp, T, Li, YX, and Diehl, AME. "IL-15 increases regenerative activity in the livers." October 2005. Link to Item
- HU, C, MCCALL, S, MADDEN, J, HUANG, H, CLOUGH, R, RABBANI, Z, JIRTLE, R, and ANSCHER, M. "Loss of heterozygosity in the M6P/IFG2R gene is an early event in the development of prostate cancer." September 2004. Full Text
- McCall, SJ, Myers, LA, Treem, WR, Patel, DD, and Gottfried, MR. "Hepatic veno-occlusive disease in primary humoral immunodeficiency." January 2003. Link to Item
- McCall, SJ, Myers, LA, Treem, WR, Patel, DD, and Gottfried, MR. "Hepatic veno-occlusive disease in primary humoral immunodeficiency." January 2003. Link to Item
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Journal Articles
- Garman, KS, and McCall, SJ. "Esophageal submucosal glands as a potential source of subsquamous intestinal metaplasia in Barrett's esophagus." Gastrointestinal Endoscopy 88, no. 1 (July 2018): 200-201. (Letter) Full Text
- Ricketts, CJ, De Cubas, AA, Fan, H, Smith, CC, Lang, M, Reznik, E, Bowlby, R, Gibb, EA, Akbani, R, Beroukhim, R, Bottaro, DP, Choueiri, TK, Gibbs, RA, Godwin, AK, Haake, S, Hakimi, AA, Henske, EP, Hsieh, JJ, Ho, TH, Kanchi, RS, Krishnan, B, Kwiatkowski, DJ, Lui, W, Merino, MJ, Mills, GB, Myers, J, Nickerson, ML, Reuter, VE, Schmidt, LS, Shelley, CS, Shen, H, Shuch, B, Signoretti, S, Srinivasan, R, Tamboli, P, Thomas, G, Vincent, BG, Vocke, CD, Wheeler, DA, Yang, L, Kim, WY, Robertson, AG, Spellman, PT, Rathmell, WK, Linehan, WM, Caesar-Johnson, SJ, Demchok, JA, Felau, I, Kasapi, M, Ferguson, ML, Hutter, CM, Sofia, HJ, Tarnuzzer, R, Wang, Z, Yang, L, Zenklusen, JC, Zhang, JJ, Chudamani, S, Liu, J, Lolla, L, Naresh, R, Pihl, T, Sun, Q, Wan, Y, Wu, Y, Cho, J, DeFreitas, T, Frazer, S, Gehlenborg, N, Getz, G, Heiman, DI, Kim, J, Lawrence, MS, Lin, P, Meier, S, Noble, MS, Saksena, G, Voet, D, Zhang, H, Bernard, B, Chambwe, N, Dhankani, V, Knijnenburg, T, Kramer, R, Leinonen, K, Liu, Y, Miller, M, Reynolds, S, Shmulevich, I, Thorsson, V, Zhang, W, Broom, BM, Hegde, AM, Ju, Z, Korkut, A, Li, J, Liang, H, Ling, S, Liu, W, Lu, Y, Ng, K-S, Rao, A, Ryan, M, Wang, J, Weinstein, JN, Zhang, J, Abeshouse, A, Armenia, J, Chakravarty, D, Chatila, WK, de Bruijn, I, Gao, J, Gross, BE, Heins, ZJ, Kundra, R, La, K, Ladanyi, M, Luna, A, Nissan, MG, Ochoa, A, Phillips, SM, Sanchez-Vega, F, Sander, C, Schultz, N, Sheridan, R, Sumer, SO, Sun, Y, Taylor, BS, Wang, J, Zhang, H, Anur, P, Peto, M, Spellman, P, Benz, C, Stuart, JM, Wong, CK, Yau, C, Hayes, DN, Parker, JS, Wilkerson, MD, Ally, A, Balasundaram, M, Brooks, D, Carlsen, R, Chuah, E, Dhalla, N, Holt, R, Jones, SJM, Kasaian, K, Lee, D, Ma, Y, Marra, MA, Mayo, M, Moore, RA, Mungall, AJ, Mungall, K, Sadeghi, S, Schein, JE, Sipahimalani, P, Tam, A, Thiessen, N, Tse, K, Wong, T, Berger, AC, Cherniack, AD, Cibulskis, C, Gabriel, SB, Gao, GF, Ha, G, Meyerson, M, Schumacher, SE, Shih, J, Kucherlapati, MH, Kucherlapati, RS, Baylin, S, Cope, L, Danilova, L, Bootwalla, MS, Lai, PH, Maglinte, DT, Van Den Berg, DJ, Weisenberger, DJ, Auman, JT, Balu, S, Bodenheimer, T, Fan, C, Hoadley, KA, Hoyle, AP, Jefferys, SR, Jones, CD, Meng, S, Mieczkowski, PA, Mose, LE, Perou, AH, Perou, CM, Roach, J, Shi, Y, Simons, JV, Skelly, T, Soloway, MG, Tan, D, Veluvolu, U, Hinoue, T, Laird, PW, Zhou, W, Bellair, M, Chang, K, Covington, K, Creighton, CJ, Dinh, H, Doddapaneni, H, Donehower, LA, Drummond, J, Glenn, R, Hale, W, Han, Y, Hu, J, Korchina, V, Lee, S, Lewis, L, Li, W, Liu, X, Morgan, M, Morton, D, Muzny, D, Santibanez, J, Sheth, M, Shinbrot, E, Wang, L, Wang, M, Xi, L, Zhao, F, Hess, J, Appelbaum, EL, Bailey, M, Cordes, MG, Ding, L, Fronick, CC, Fulton, LA, Fulton, RS, Kandoth, C, Mardis, ER, McLellan, MD, Miller, CA, Schmidt, HK, Wilson, RK, Crain, D, Curley, E, Gardner, J, Lau, K, Mallery, D, Morris, S, Paulauskis, J, Penny, R, Shelton, C, Shelton, T, Sherman, M, Thompson, E, Yena, P, Bowen, J, Gastier-Foster, JM, Gerken, M, Leraas, KM, Lichtenberg, TM, Ramirez, NC, Wise, L, Zmuda, E, Corcoran, N, Costello, T, Hovens, C, Carvalho, AL, de Carvalho, AC, Fregnani, JH, Longatto-Filho, A, Reis, RM, Scapulatempo-Neto, C, Silveira, HCS, Vidal, DO, Burnette, A, Eschbacher, J, Hermes, B, Noss, A, Singh, R, Anderson, ML, Castro, PD, Ittmann, M, Huntsman, D, Kohl, B, Le, X, Thorp, R, Andry, C, Duffy, ER, Lyadov, V, Paklina, O, Setdikova, G, Shabunin, A, Tavobilov, M, McPherson, C, Warnick, R, Berkowitz, R, Cramer, D, Feltmate, C, Horowitz, N, Kibel, A, Muto, M, Raut, CP, Malykh, A, Barnholtz-Sloan, JS, Barrett, W, Devine, K, Fulop, J, Ostrom, QT, Shimmel, K, Wolinsky, Y, Sloan, AE, De Rose, A, Giuliante, F, Goodman, M, Karlan, BY, Hagedorn, CH, Eckman, J, Harr, J, Tucker, K, Zach, LA, Deyarmin, B, Hu, H, Kvecher, L, Larson, C, Mural, RJ, Somiari, S, Vicha, A, Zelinka, T, Bennett, J, Iacocca, M, Rabeno, B, Swanson, P, Latour, M, Lacombe, L, Têtu, B, Bergeron, A, McGraw, M, Staugaitis, SM, Chabot, J, Hibshoosh, H, Sepulveda, A, Su, T, Wang, T, Potapova, O, Voronina, O, Desjardins, L, Mariani, O, Roman-Roman, S, Sastre, X, Stern, M-H, Cheng, F, Berchuck, A, Bigner, D, Lipp, E, Marks, J, McCall, S, McLendon, R, Secord, A, Sharp, A, Behera, M, Brat, DJ, Chen, A, Delman, K, Force, S, Khuri, F, Magliocca, K, Maithel, S, Olson, JJ, Owonikoko, T, Pickens, A, Ramalingam, S, Shin, DM, Sica, G, Van Meir, EG, Zhang, H, Eijckenboom, W, Gillis, A, Korpershoek, E, Looijenga, L, Oosterhuis, W, Stoop, H, van Kessel, KE, Zwarthoff, EC, Calatozzolo, C, Cuppini, L, Cuzzubbo, S, DiMeco, F, Finocchiaro, G, Mattei, L, Perin, A, Pollo, B, Chen, C, Houck, J, Lohavanichbutr, P, Hartmann, A, Stoehr, C, Stoehr, R, Taubert, H, Wach, S, Wullich, B, Kycler, W, Murawa, D, Wiznerowicz, M, Chung, K, Edenfield, WJ, Martin, J, Baudin, E, Bubley, G, Bueno, R, De Rienzo, A, Richards, WG, Kalkanis, S, Mikkelsen, T, Noushmehr, H, Scarpace, L, Girard, N, Aymerich, M, Campo, E, Giné, E, Guillermo, AL, Van Bang, N, Hanh, PT, Phu, BD, Tang, Y, Colman, H, Evason, K, Dottino, PR, Martignetti, JA, Gabra, H, Juhl, H, Akeredolu, T, Stepa, S, Hoon, D, Ahn, K, Kang, KJ, Beuschlein, F, Breggia, A, Birrer, M, Bell, D, Borad, M, Bryce, AH, Castle, E, Chandan, V, Cheville, J, Copland, JA, Farnell, M, Flotte, T, Giama, N, Ho, T, Kendrick, M, Kocher, J-P, Kopp, K, Moser, C, Nagorney, D, O’Brien, D, O’Neill, BP, Patel, T, Petersen, G, Que, F, Rivera, M, Roberts, L, Smallridge, R, Smyrk, T, Stanton, M, Thompson, RH, Torbenson, M, Yang, JD, Zhang, L, Brimo, F, Ajani, JA, Gonzalez, AMA, Behrens, C, Bondaruk, J, Broaddus, R, Czerniak, B, Esmaeli, B, Fujimoto, J, Gershenwald, J, Guo, C, Lazar, AJ, Logothetis, C, Meric-Bernstam, F, Moran, C, Ramondetta, L, Rice, D, Sood, A, Thompson, T, Troncoso, P, Tsao, A, Wistuba, I, Carter, C, Haydu, L, Hersey, P, Jakrot, V, Kakavand, H, and Kefford, R et al.. "The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma." Cell Reports 23, no. 12 (June 2018): 3698-3698. Full Text
- Siena, S, Sartore-Bianchi, A, Marsoni, S, Hurwitz, HI, McCall, SJ, Penault-Llorca, F, Srock, S, Bardelli, A, and Trusolino, L. "Targeting the human epidermal growth factor receptor 2 (HER2) oncogene in colorectal cancer." Annals of Oncology : Official Journal of the European Society for Medical Oncology 29, no. 5 (May 2018): 1108-1119. Full Text
- Liu, Y, Sethi, NS, Hinoue, T, Schneider, BG, Cherniack, AD, Sanchez-Vega, F, Seoane, JA, Farshidfar, F, Bowlby, R, Islam, M, Kim, J, Chatila, W, Akbani, R, Kanchi, RS, Rabkin, CS, Willis, JE, Wang, KK, McCall, SJ, Mishra, L, Ojesina, AI, Bullman, S, Pedamallu, CS, Lazar, AJ, Sakai, R, Cancer Genome Atlas Research Network, , Thorsson, V, Bass, AJ, and Laird, PW. "Comparative Molecular Analysis of Gastrointestinal Adenocarcinomas." Cancer Cell 33, no. 4 (April 2, 2018): 721-735.e8. Full Text
- Bailey, MH, Tokheim, C, Porta-Pardo, E, Sengupta, S, Bertrand, D, Weerasinghe, A, Colaprico, A, Wendl, MC, Kim, J, Reardon, B, Ng, PK-S, Jeong, KJ, Cao, S, Wang, Z, Gao, J, Gao, Q, Wang, F, Liu, EM, Mularoni, L, Rubio-Perez, C, Nagarajan, N, Cortés-Ciriano, I, Zhou, DC, Liang, W-W, Hess, JM, Yellapantula, VD, Tamborero, D, Gonzalez-Perez, A, Suphavilai, C, Ko, JY, Khurana, E, Park, PJ, Van Allen, EM, Liang, H, Lawrence, MS, Godzik, A, Lopez-Bigas, N, Stuart, J, Wheeler, D, Getz, G, Chen, K, Lazar, AJ, Mills, GB, Karchin, R, Ding, L, Caesar-Johnson, SJ, Demchok, JA, Felau, I, Kasapi, M, Ferguson, ML, Hutter, CM, Sofia, HJ, Tarnuzzer, R, Wang, Z, Yang, L, Zenklusen, JC, Zhang, JJ, Chudamani, S, Liu, J, Lolla, L, Naresh, R, Pihl, T, Sun, Q, Wan, Y, Wu, Y, Cho, J, DeFreitas, T, Frazer, S, Gehlenborg, N, Heiman, DI, Lin, P, Meier, S, Noble, MS, Saksena, G, Voet, D, Zhang, H, Bernard, B, Chambwe, N, Dhankani, V, Knijnenburg, T, Kramer, R, Leinonen, K, Liu, Y, Miller, M, Reynolds, S, Shmulevich, I, Thorsson, V, Zhang, W, Akbani, R, Broom, BM, Hegde, AM, Ju, Z, Kanchi, RS, Korkut, A, Li, J, Ling, S, Liu, W, Lu, Y, Ng, K-S, Rao, A, Ryan, M, Wang, J, Weinstein, JN, Zhang, J, Abeshouse, A, Armenia, J, Chakravarty, D, Chatila, WK, de Bruijn, I, Gross, BE, Heins, ZJ, Kundra, R, La, K, Ladanyi, M, Luna, A, Nissan, MG, Ochoa, A, Phillips, SM, Reznik, E, Sanchez-Vega, F, Sander, C, Schultz, N, Sheridan, R, Sumer, SO, Sun, Y, Taylor, BS, Wang, J, Zhang, H, Anur, P, Peto, M, Spellman, P, Benz, C, Stuart, JM, Wong, CK, Yau, C, Hayes, DN, Parker, JS, Wilkerson, MD, Ally, A, Balasundaram, M, Bowlby, R, Brooks, D, Carlsen, R, Chuah, E, Dhalla, N, Holt, R, Jones, SJM, Kasaian, K, Lee, D, Ma, Y, Marra, MA, Mayo, M, Moore, RA, Mungall, AJ, Mungall, K, Robertson, AG, Sadeghi, S, Schein, JE, Sipahimalani, P, Tam, A, Thiessen, N, Tse, K, Wong, T, Berger, AC, Beroukhim, R, Cherniack, AD, Cibulskis, C, Gabriel, SB, Gao, GF, Ha, G, Meyerson, M, Schumacher, SE, Shih, J, Kucherlapati, MH, Kucherlapati, RS, Baylin, S, Cope, L, Danilova, L, Bootwalla, MS, Lai, PH, Maglinte, DT, Van Den Berg, DJ, Weisenberger, DJ, Auman, JT, Balu, S, Bodenheimer, T, Fan, C, Hoadley, KA, Hoyle, AP, Jefferys, SR, Jones, CD, Meng, S, Mieczkowski, PA, Mose, LE, Perou, AH, Perou, CM, Roach, J, Shi, Y, Simons, JV, Skelly, T, Soloway, MG, Tan, D, Veluvolu, U, Fan, H, Hinoue, T, Laird, PW, Shen, H, Zhou, W, Bellair, M, Chang, K, Covington, K, Creighton, CJ, Dinh, H, Doddapaneni, H, Donehower, LA, Drummond, J, Gibbs, RA, Glenn, R, Hale, W, Han, Y, Hu, J, Korchina, V, Lee, S, Lewis, L, Li, W, Liu, X, Morgan, M, Morton, D, Muzny, D, Santibanez, J, Sheth, M, Shinbrot, E, Wang, L, Wang, M, Wheeler, DA, Xi, L, Zhao, F, Hess, J, Appelbaum, EL, Bailey, M, Cordes, MG, Fronick, CC, Fulton, LA, Fulton, RS, Kandoth, C, Mardis, ER, McLellan, MD, Miller, CA, Schmidt, HK, Wilson, RK, Crain, D, Curley, E, Gardner, J, Lau, K, Mallery, D, Morris, S, Paulauskis, J, Penny, R, Shelton, C, Shelton, T, Sherman, M, Thompson, E, Yena, P, Bowen, J, Gastier-Foster, JM, Gerken, M, Leraas, KM, Lichtenberg, TM, Ramirez, NC, Wise, L, Zmuda, E, Corcoran, N, Costello, T, Hovens, C, Carvalho, AL, de Carvalho, AC, Fregnani, JH, Longatto-Filho, A, Reis, RM, Scapulatempo-Neto, C, Silveira, HCS, Vidal, DO, Burnette, A, Eschbacher, J, Hermes, B, Noss, A, Singh, R, Anderson, ML, Castro, PD, Ittmann, M, Huntsman, D, Kohl, B, Le, X, Thorp, R, Andry, C, Duffy, ER, Lyadov, V, Paklina, O, Setdikova, G, Shabunin, A, Tavobilov, M, McPherson, C, Warnick, R, Berkowitz, R, Cramer, D, Feltmate, C, Horowitz, N, Kibel, A, Muto, M, Raut, CP, Malykh, A, Barnholtz-Sloan, JS, Barrett, W, Devine, K, Fulop, J, Ostrom, QT, Shimmel, K, Wolinsky, Y, Sloan, AE, De Rose, A, Giuliante, F, Goodman, M, Karlan, BY, Hagedorn, CH, Eckman, J, Harr, J, Myers, J, Tucker, K, Zach, LA, Deyarmin, B, Hu, H, Kvecher, L, Larson, C, Mural, RJ, Somiari, S, Vicha, A, Zelinka, T, Bennett, J, Iacocca, M, Rabeno, B, Swanson, P, Latour, M, Lacombe, L, Têtu, B, Bergeron, A, McGraw, M, Staugaitis, SM, Chabot, J, Hibshoosh, H, Sepulveda, A, Su, T, Wang, T, Potapova, O, Voronina, O, Desjardins, L, Mariani, O, Roman-Roman, S, Sastre, X, Stern, M-H, Cheng, F, Signoretti, S, Berchuck, A, Bigner, D, Lipp, E, Marks, J, McCall, S, McLendon, R, Secord, A, Sharp, A, Behera, M, Brat, DJ, Chen, A, Delman, K, Force, S, Khuri, F, Magliocca, K, Maithel, S, Olson, JJ, Owonikoko, T, Pickens, A, Ramalingam, S, Shin, DM, Sica, G, Van Meir, EG, Zhang, H, Eijckenboom, W, Gillis, A, Korpershoek, E, Looijenga, L, Oosterhuis, W, Stoop, H, van Kessel, KE, Zwarthoff, EC, Calatozzolo, C, Cuppini, L, Cuzzubbo, S, DiMeco, F, Finocchiaro, G, Mattei, L, Perin, A, Pollo, B, Chen, C, Houck, J, Lohavanichbutr, P, Hartmann, A, Stoehr, C, Stoehr, R, Taubert, H, Wach, S, Wullich, B, Kycler, W, Murawa, D, Wiznerowicz, M, Chung, K, Edenfield, WJ, Martin, J, Baudin, E, Bubley, G, Bueno, R, De Rienzo, A, Richards, WG, Kalkanis, S, Mikkelsen, T, Noushmehr, H, Scarpace, L, Girard, N, Aymerich, M, Campo, E, Giné, E, Guillermo, AL, Van Bang, N, Hanh, PT, Phu, BD, Tang, Y, Colman, H, Evason, K, Dottino, PR, Martignetti, JA, Gabra, H, Juhl, H, Akeredolu, T, Stepa, S, Hoon, D, Ahn, K, Kang, KJ, Beuschlein, F, Breggia, A, Birrer, M, Bell, D, Borad, M, Bryce, AH, Castle, E, Chandan, V, Cheville, J, Copland, JA, Farnell, M, Flotte, T, Giama, N, Ho, T, Kendrick, M, Kocher, J-P, Kopp, K, Moser, C, Nagorney, D, O’Brien, D, O’Neill, BP, Patel, T, Petersen, G, Que, F, Rivera, M, Roberts, L, Smallridge, R, Smyrk, T, Stanton, M, Thompson, RH, Torbenson, M, Yang, JD, Zhang, L, Brimo, F, Ajani, JA, Gonzalez, AMA, Behrens, C, Bondaruk, J, Broaddus, R, Czerniak, B, Esmaeli, B, Fujimoto, J, Gershenwald, J, Guo, C, Logothetis, C, Meric-Bernstam, F, Moran, C, Ramondetta, L, Rice, D, Sood, A, Tamboli, P, Thompson, T, Troncoso, P, Tsao, A, and Wistuba, I et al.. "Comprehensive Characterization of Cancer Driver Genes and Mutations." Cell 173, no. 2 (April 2018): 371-385.e18. Full Text
- Berger, AC, Korkut, A, Kanchi, RS, Hegde, AM, Lenoir, W, Liu, W, Liu, Y, Fan, H, Shen, H, Ravikumar, V, Rao, A, Schultz, A, Li, X, Sumazin, P, Williams, C, Mestdagh, P, Gunaratne, PH, Yau, C, Bowlby, R, Robertson, AG, Tiezzi, DG, Wang, C, Cherniack, AD, Godwin, AK, Kuderer, NM, Rader, JS, Zuna, RE, Sood, AK, Lazar, AJ, Ojesina, AI, Adebamowo, C, Adebamowo, SN, Baggerly, KA, Chen, T-W, Chiu, H-S, Lefever, S, Liu, L, MacKenzie, K, Orsulic, S, Roszik, J, Shelley, CS, Song, Q, Vellano, CP, Wentzensen, N, Weinstein, JN, Mills, GB, Levine, DA, Akbani, R, Caesar-Johnson, SJ, Demchok, JA, Felau, I, Kasapi, M, Ferguson, ML, Hutter, CM, Sofia, HJ, Tarnuzzer, R, Wang, Z, Yang, L, Zenklusen, JC, Zhang, JJ, Chudamani, S, Liu, J, Lolla, L, Naresh, R, Pihl, T, Sun, Q, Wan, Y, Wu, Y, Cho, J, DeFreitas, T, Frazer, S, Gehlenborg, N, Getz, G, Heiman, DI, Kim, J, Lawrence, MS, Lin, P, Meier, S, Noble, MS, Saksena, G, Voet, D, Zhang, H, Bernard, B, Chambwe, N, Dhankani, V, Knijnenburg, T, Kramer, R, Leinonen, K, Miller, M, Reynolds, S, Shmulevich, I, Thorsson, V, Zhang, W, Broom, BM, Ju, Z, Li, J, Liang, H, Ling, S, Lu, Y, Ng, K-S, Ryan, M, Wang, J, Zhang, J, Abeshouse, A, Armenia, J, Chakravarty, D, Chatila, WK, de Bruijn, I, Gao, J, Gross, BE, Heins, ZJ, Kundra, R, La, K, Ladanyi, M, Luna, A, Nissan, MG, Ochoa, A, Phillips, SM, Reznik, E, Sanchez-Vega, F, Sander, C, Schultz, N, Sheridan, R, Sumer, SO, Sun, Y, Taylor, BS, Wang, J, Zhang, H, Anur, P, Peto, M, Spellman, P, Benz, C, Stuart, JM, Wong, CK, Hayes, DN, Parker, JS, Wilkerson, MD, Ally, A, Balasundaram, M, Brooks, D, Carlsen, R, Chuah, E, Dhalla, N, Holt, R, Jones, SJM, Kasaian, K, Lee, D, Ma, Y, Marra, MA, Mayo, M, Moore, RA, Mungall, AJ, Mungall, K, Sadeghi, S, Schein, JE, Sipahimalani, P, Tam, A, Thiessen, N, Tse, K, Wong, T, Beroukhim, R, Cibulskis, C, Gabriel, SB, Gao, GF, Ha, G, Meyerson, M, Schumacher, SE, Shih, J, Kucherlapati, MH, Kucherlapati, RS, Baylin, S, Cope, L, Danilova, L, Bootwalla, MS, Lai, PH, Maglinte, DT, Van Den Berg, DJ, Weisenberger, DJ, Auman, JT, Balu, S, Bodenheimer, T, Fan, C, Hoadley, KA, Hoyle, AP, Jefferys, SR, Jones, CD, Meng, S, Mieczkowski, PA, Mose, LE, Perou, AH, Perou, CM, Roach, J, Shi, Y, Simons, JV, Skelly, T, Soloway, MG, Tan, D, Veluvolu, U, Hinoue, T, Laird, PW, Zhou, W, Bellair, M, Chang, K, Covington, K, Creighton, CJ, Dinh, H, Doddapaneni, H, Donehower, LA, Drummond, J, Gibbs, RA, Glenn, R, Hale, W, Han, Y, Hu, J, Korchina, V, Lee, S, Lewis, L, Li, W, Liu, X, Morgan, M, Morton, D, Muzny, D, Santibanez, J, Sheth, M, Shinbrot, E, Wang, L, Wang, M, Wheeler, DA, Xi, L, Zhao, F, Hess, J, Appelbaum, EL, Bailey, M, Cordes, MG, Ding, L, Fronick, CC, Fulton, LA, Fulton, RS, Kandoth, C, Mardis, ER, McLellan, MD, Miller, CA, Schmidt, HK, Wilson, RK, Crain, D, Curley, E, Gardner, J, Lau, K, Mallery, D, Morris, S, Paulauskis, J, Penny, R, Shelton, C, Shelton, T, Sherman, M, Thompson, E, Yena, P, Bowen, J, Gastier-Foster, JM, Gerken, M, Leraas, KM, Lichtenberg, TM, Ramirez, NC, Wise, L, Zmuda, E, Corcoran, N, Costello, T, Hovens, C, Carvalho, AL, de Carvalho, AC, Fregnani, JH, Longatto-Filho, A, Reis, RM, Scapulatempo-Neto, C, Silveira, HCS, Vidal, DO, Burnette, A, Eschbacher, J, Hermes, B, Noss, A, Singh, R, Anderson, ML, Castro, PD, Ittmann, M, Huntsman, D, Kohl, B, Le, X, Thorp, R, Andry, C, Duffy, ER, Lyadov, V, Paklina, O, Setdikova, G, Shabunin, A, Tavobilov, M, McPherson, C, Warnick, R, Berkowitz, R, Cramer, D, Feltmate, C, Horowitz, N, Kibel, A, Muto, M, Raut, CP, Malykh, A, Barnholtz-Sloan, JS, Barrett, W, Devine, K, Fulop, J, Ostrom, QT, Shimmel, K, Wolinsky, Y, Sloan, AE, De Rose, A, Giuliante, F, Goodman, M, Karlan, BY, Hagedorn, CH, Eckman, J, Harr, J, Myers, J, Tucker, K, Zach, LA, Deyarmin, B, Hu, H, Kvecher, L, Larson, C, Mural, RJ, Somiari, S, Vicha, A, Zelinka, T, Bennett, J, Iacocca, M, Rabeno, B, Swanson, P, Latour, M, Lacombe, L, Têtu, B, Bergeron, A, McGraw, M, Staugaitis, SM, Chabot, J, Hibshoosh, H, Sepulveda, A, Su, T, Wang, T, Potapova, O, Voronina, O, Desjardins, L, Mariani, O, Roman-Roman, S, Sastre, X, Stern, M-H, Cheng, F, Signoretti, S, Berchuck, A, Bigner, D, Lipp, E, Marks, J, McCall, S, McLendon, R, Secord, A, Sharp, A, Behera, M, Brat, DJ, Chen, A, Delman, K, Force, S, Khuri, F, Magliocca, K, Maithel, S, Olson, JJ, Owonikoko, T, Pickens, A, Ramalingam, S, Shin, DM, Sica, G, Van Meir, EG, Zhang, H, Eijckenboom, W, Gillis, A, Korpershoek, E, Looijenga, L, Oosterhuis, W, Stoop, H, van Kessel, KE, Zwarthoff, EC, Calatozzolo, C, Cuppini, L, Cuzzubbo, S, DiMeco, F, Finocchiaro, G, Mattei, L, Perin, A, Pollo, B, Chen, C, Houck, J, Lohavanichbutr, P, Hartmann, A, Stoehr, C, Stoehr, R, Taubert, H, Wach, S, Wullich, B, Kycler, W, Murawa, D, Wiznerowicz, M, Chung, K, Edenfield, WJ, Martin, J, Baudin, E, Bubley, G, Bueno, R, De Rienzo, A, Richards, WG, Kalkanis, S, Mikkelsen, T, Noushmehr, H, Scarpace, L, Girard, N, Aymerich, M, Campo, E, Giné, E, Guillermo, AL, Van Bang, N, Hanh, PT, Phu, BD, Tang, Y, Colman, H, Evason, K, Dottino, PR, Martignetti, JA, Gabra, H, Juhl, H, Akeredolu, T, Stepa, S, Hoon, D, Ahn, K, Kang, KJ, Beuschlein, F, Breggia, A, Birrer, M, Bell, D, Borad, M, Bryce, AH, Castle, E, Chandan, V, Cheville, J, Copland, JA, Farnell, M, Flotte, T, Giama, N, Ho, T, Kendrick, M, Kocher, J-P, Kopp, K, Moser, C, Nagorney, D, O’Brien, D, O’Neill, BP, Patel, T, Petersen, G, Que, F, Rivera, M, Roberts, L, Smallridge, R, Smyrk, T, Stanton, M, Thompson, RH, Torbenson, M, Yang, JD, Zhang, L, Brimo, F, Ajani, JA, Angulo Gonzalez, AM, Behrens, C, Bondaruk, J, Broaddus, R, Czerniak, B, Esmaeli, B, Fujimoto, J, Gershenwald, J, Guo, C, Logothetis, C, Meric-Bernstam, F, Moran, C, Ramondetta, L, Rice, D, Sood, A, Tamboli, P, Thompson, T, Troncoso, P, Tsao, A, Wistuba, I, Carter, C, Haydu, L, Hersey, P, Jakrot, V, Kakavand, H, and Kefford, R et al.. "A Comprehensive Pan-Cancer Molecular Study of Gynecologic and Breast Cancers." Cancer Cell 33, no. 4 (April 2018): 690-705.e9. Full Text
- Campbell, JD, Yau, C, Bowlby, R, Liu, Y, Brennan, K, Fan, H, Taylor, AM, Wang, C, Walter, V, Akbani, R, Byers, LA, Creighton, CJ, Coarfa, C, Shih, J, Cherniack, AD, Gevaert, O, Prunello, M, Shen, H, Anur, P, Chen, J, Cheng, H, Hayes, DN, Bullman, S, Pedamallu, CS, Ojesina, AI, Sadeghi, S, Mungall, KL, Robertson, AG, Benz, C, Schultz, A, Kanchi, RS, Gay, CM, Hegde, A, Diao, L, Wang, J, Ma, W, Sumazin, P, Chiu, H-S, Chen, T-W, Gunaratne, P, Donehower, L, Rader, JS, Zuna, R, Al-Ahmadie, H, Lazar, AJ, Flores, ER, Tsai, KY, Zhou, JH, Rustgi, AK, Drill, E, Shen, R, Wong, CK, Stuart, JM, Laird, PW, Hoadley, KA, Weinstein, JN, Peto, M, Pickering, CR, Chen, Z, Van Waes, C, Caesar-Johnson, SJ, Demchok, JA, Felau, I, Kasapi, M, Ferguson, ML, Hutter, CM, Sofia, HJ, Tarnuzzer, R, Wang, Z, Yang, L, Zenklusen, JC, Zhang, JJ, Chudamani, S, Liu, J, Lolla, L, Naresh, R, Pihl, T, Sun, Q, Wan, Y, Wu, Y, Cho, J, DeFreitas, T, Frazer, S, Gehlenborg, N, Getz, G, Heiman, DI, Kim, J, Lawrence, MS, Lin, P, Meier, S, Noble, MS, Saksena, G, Voet, D, Zhang, H, Bernard, B, Chambwe, N, Dhankani, V, Knijnenburg, T, Kramer, R, Leinonen, K, Miller, M, Reynolds, S, Shmulevich, I, Thorsson, V, Zhang, W, Broom, BM, Hegde, AM, Ju, Z, Korkut, A, Li, J, Liang, H, Ling, S, Liu, W, Lu, Y, Mills, GB, Ng, K-S, Rao, A, Ryan, M, Zhang, J, Abeshouse, A, Armenia, J, Chakravarty, D, Chatila, WK, de Bruijn, I, Gao, J, Gross, BE, Heins, ZJ, Kundra, R, La, K, Ladanyi, M, Luna, A, Nissan, MG, Ochoa, A, Phillips, SM, Reznik, E, Sanchez-Vega, F, Sander, C, Schultz, N, Sheridan, R, Sumer, SO, Sun, Y, Taylor, BS, Wang, J, Zhang, H, Spellman, P, Parker, JS, Wilkerson, MD, Ally, A, Balasundaram, M, Brooks, D, Carlsen, R, Chuah, E, Dhalla, N, Holt, R, Jones, SJM, Kasaian, K, Lee, D, Ma, Y, Marra, MA, Mayo, M, Moore, RA, Mungall, AJ, Mungall, K, Schein, JE, Sipahimalani, P, Tam, A, Thiessen, N, Tse, K, Wong, T, Berger, AC, Beroukhim, R, Cibulskis, C, Gabriel, SB, Gao, GF, Ha, G, Meyerson, M, Schumacher, SE, Kucherlapati, MH, Kucherlapati, RS, Baylin, S, Cope, L, Danilova, L, Bootwalla, MS, Lai, PH, Maglinte, DT, Van Den Berg, DJ, Weisenberger, DJ, Auman, JT, Balu, S, Bodenheimer, T, Fan, C, Hoyle, AP, Jefferys, SR, Jones, CD, Meng, S, Mieczkowski, PA, Mose, LE, Perou, AH, Perou, CM, Roach, J, Shi, Y, Simons, JV, Skelly, T, Soloway, MG, Tan, D, Veluvolu, U, Hinoue, T, Zhou, W, Bellair, M, Chang, K, Covington, K, Dinh, H, Doddapaneni, H, Donehower, LA, Drummond, J, Gibbs, RA, Glenn, R, Hale, W, Han, Y, Hu, J, Korchina, V, Lee, S, Lewis, L, Li, W, Liu, X, Morgan, M, Morton, D, Muzny, D, Santibanez, J, Sheth, M, Shinbrot, E, Wang, L, Wang, M, Wheeler, DA, Xi, L, Zhao, F, Hess, J, Appelbaum, EL, Bailey, M, Cordes, MG, Ding, L, Fronick, CC, Fulton, LA, Fulton, RS, Kandoth, C, Mardis, ER, McLellan, MD, Miller, CA, Schmidt, HK, Wilson, RK, Crain, D, Curley, E, Gardner, J, Lau, K, Mallery, D, Morris, S, Paulauskis, J, Penny, R, Shelton, C, Shelton, T, Sherman, M, Thompson, E, Yena, P, Bowen, J, Gastier-Foster, JM, Gerken, M, Leraas, KM, Lichtenberg, TM, Ramirez, NC, Wise, L, Zmuda, E, Corcoran, N, Costello, T, Hovens, C, Carvalho, AL, de Carvalho, AC, Fregnani, JH, Longatto-Filho, A, Reis, RM, Scapulatempo-Neto, C, Silveira, HCS, Vidal, DO, Burnette, A, Eschbacher, J, Hermes, B, Noss, A, Singh, R, Anderson, ML, Castro, PD, Ittmann, M, Huntsman, D, Kohl, B, Le, X, Thorp, R, Andry, C, Duffy, ER, Lyadov, V, Paklina, O, Setdikova, G, Shabunin, A, Tavobilov, M, McPherson, C, Warnick, R, Berkowitz, R, Cramer, D, Feltmate, C, Horowitz, N, Kibel, A, Muto, M, Raut, CP, Malykh, A, Barnholtz-Sloan, JS, Barrett, W, Devine, K, Fulop, J, Ostrom, QT, Shimmel, K, Wolinsky, Y, Sloan, AE, De Rose, A, Giuliante, F, Goodman, M, Karlan, BY, Hagedorn, CH, Eckman, J, Harr, J, Myers, J, Tucker, K, Zach, LA, Deyarmin, B, Hu, H, Kvecher, L, Larson, C, Mural, RJ, Somiari, S, Vicha, A, Zelinka, T, Bennett, J, Iacocca, M, Rabeno, B, Swanson, P, Latour, M, Lacombe, L, Têtu, B, Bergeron, A, McGraw, M, Staugaitis, SM, Chabot, J, Hibshoosh, H, Sepulveda, A, Su, T, Wang, T, Potapova, O, Voronina, O, Desjardins, L, Mariani, O, Roman-Roman, S, Sastre, X, Stern, M-H, Cheng, F, Signoretti, S, Berchuck, A, Bigner, D, Lipp, E, Marks, J, McCall, S, McLendon, R, Secord, A, Sharp, A, Behera, M, Brat, DJ, Chen, A, Delman, K, Force, S, Khuri, F, Magliocca, K, Maithel, S, Olson, JJ, Owonikoko, T, Pickens, A, Ramalingam, S, Shin, DM, Sica, G, Van Meir, EG, Zhang, H, Eijckenboom, W, Gillis, A, Korpershoek, E, Looijenga, L, Oosterhuis, W, Stoop, H, van Kessel, KE, Zwarthoff, EC, Calatozzolo, C, Cuppini, L, Cuzzubbo, S, DiMeco, F, Finocchiaro, G, Mattei, L, Perin, A, Pollo, B, Chen, C, Houck, J, Lohavanichbutr, P, Hartmann, A, Stoehr, C, Stoehr, R, Taubert, H, Wach, S, Wullich, B, Kycler, W, Murawa, D, Wiznerowicz, M, Chung, K, Edenfield, WJ, Martin, J, Baudin, E, Bubley, G, Bueno, R, De Rienzo, A, Richards, WG, Kalkanis, S, Mikkelsen, T, Noushmehr, H, Scarpace, L, Girard, N, Aymerich, M, Campo, E, Giné, E, Guillermo, AL, Van Bang, N, Hanh, PT, Phu, BD, Tang, Y, Colman, H, Evason, K, Dottino, PR, Martignetti, JA, Gabra, H, Juhl, H, Akeredolu, T, Stepa, S, Hoon, D, Ahn, K, Kang, KJ, Beuschlein, F, Breggia, A, Birrer, M, Bell, D, Borad, M, Bryce, AH, Castle, E, Chandan, V, Cheville, J, Copland, JA, Farnell, M, Flotte, T, Giama, N, Ho, T, Kendrick, M, Kocher, J-P, Kopp, K, Moser, C, Nagorney, D, O’Brien, D, O’Neill, BP, Patel, T, Petersen, G, Que, F, Rivera, M, Roberts, L, Smallridge, R, Smyrk, T, Stanton, M, Thompson, RH, Torbenson, M, Yang, JD, Zhang, L, Brimo, F, Ajani, JA, Gonzalez, AMA, Behrens, C, Bondaruk, J, Broaddus, R, Czerniak, B, Esmaeli, B, Fujimoto, J, Gershenwald, J, Guo, C, Logothetis, C, Meric-Bernstam, F, Moran, C, Ramondetta, L, Rice, D, Sood, A, Tamboli, P, Thompson, T, Troncoso, P, Tsao, A, and Wistuba, I et al.. "Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas." Cell Reports 23, no. 1 (April 2018): 194-212.e6. Full Text
- Chen, H, Li, C, Peng, X, Zhou, Z, Weinstein, JN, Liang, H, Caesar-Johnson, SJ, Demchok, JA, Felau, I, Kasapi, M, Ferguson, ML, Hutter, CM, Sofia, HJ, Tarnuzzer, R, Wang, Z, Yang, L, Zenklusen, JC, Zhang, JJ, Chudamani, S, Liu, J, Lolla, L, Naresh, R, Pihl, T, Sun, Q, Wan, Y, Wu, Y, Cho, J, DeFreitas, T, Frazer, S, Gehlenborg, N, Getz, G, Heiman, DI, Kim, J, Lawrence, MS, Lin, P, Meier, S, Noble, MS, Saksena, G, Voet, D, Zhang, H, Bernard, B, Chambwe, N, Dhankani, V, Knijnenburg, T, Kramer, R, Leinonen, K, Liu, Y, Miller, M, Reynolds, S, Shmulevich, I, Thorsson, V, Zhang, W, Akbani, R, Broom, BM, Hegde, AM, Ju, Z, Kanchi, RS, Korkut, A, Li, J, Ling, S, Liu, W, Lu, Y, Mills, GB, Ng, K-S, Rao, A, Ryan, M, Wang, J, Zhang, J, Abeshouse, A, Armenia, J, Chakravarty, D, Chatila, WK, de Bruijn, I, Gao, J, Gross, BE, Heins, ZJ, Kundra, R, La, K, Ladanyi, M, Luna, A, Nissan, MG, Ochoa, A, Phillips, SM, Reznik, E, Sanchez-Vega, F, Sander, C, Schultz, N, Sheridan, R, Sumer, SO, Sun, Y, Taylor, BS, Wang, J, Zhang, H, Anur, P, Peto, M, Spellman, P, Benz, C, Stuart, JM, Wong, CK, Yau, C, Hayes, DN, Parker, JS, Wilkerson, MD, Ally, A, Balasundaram, M, Bowlby, R, Brooks, D, Carlsen, R, Chuah, E, Dhalla, N, Holt, R, Jones, SJM, Kasaian, K, Lee, D, Ma, Y, Marra, MA, Mayo, M, Moore, RA, Mungall, AJ, Mungall, K, Robertson, AG, Sadeghi, S, Schein, JE, Sipahimalani, P, Tam, A, Thiessen, N, Tse, K, Wong, T, Berger, AC, Beroukhim, R, Cherniack, AD, Cibulskis, C, Gabriel, SB, Gao, GF, Ha, G, Meyerson, M, Schumacher, SE, Shih, J, Kucherlapati, MH, Kucherlapati, RS, Baylin, S, Cope, L, Danilova, L, Bootwalla, MS, Lai, PH, Maglinte, DT, Van Den Berg, DJ, Weisenberger, DJ, Auman, JT, Balu, S, Bodenheimer, T, Fan, C, Hoadley, KA, Hoyle, AP, Jefferys, SR, Jones, CD, Meng, S, Mieczkowski, PA, Mose, LE, Perou, AH, Perou, CM, Roach, J, Shi, Y, Simons, JV, Skelly, T, Soloway, MG, Tan, D, Veluvolu, U, Fan, H, Hinoue, T, Laird, PW, Shen, H, Zhou, W, Bellair, M, Chang, K, Covington, K, Creighton, CJ, Dinh, H, Doddapaneni, H, Donehower, LA, Drummond, J, Gibbs, RA, Glenn, R, Hale, W, Han, Y, Hu, J, Korchina, V, Lee, S, Lewis, L, Li, W, Liu, X, Morgan, M, Morton, D, Muzny, D, Santibanez, J, Sheth, M, Shinbrot, E, Wang, L, Wang, M, Wheeler, DA, Xi, L, Zhao, F, Hess, J, Appelbaum, EL, Bailey, M, Cordes, MG, Ding, L, Fronick, CC, Fulton, LA, Fulton, RS, Kandoth, C, Mardis, ER, McLellan, MD, Miller, CA, Schmidt, HK, Wilson, RK, Crain, D, Curley, E, Gardner, J, Lau, K, Mallery, D, Morris, S, Paulauskis, J, Penny, R, Shelton, C, Shelton, T, Sherman, M, Thompson, E, Yena, P, Bowen, J, Gastier-Foster, JM, Gerken, M, Leraas, KM, Lichtenberg, TM, Ramirez, NC, Wise, L, Zmuda, E, Corcoran, N, Costello, T, Hovens, C, Carvalho, AL, de Carvalho, AC, Fregnani, JH, Longatto-Filho, A, Reis, RM, Scapulatempo-Neto, C, Silveira, HCS, Vidal, DO, Burnette, A, Eschbacher, J, Hermes, B, Noss, A, Singh, R, Anderson, ML, Castro, PD, Ittmann, M, Huntsman, D, Kohl, B, Le, X, Thorp, R, Andry, C, Duffy, ER, Lyadov, V, Paklina, O, Setdikova, G, Shabunin, A, Tavobilov, M, McPherson, C, Warnick, R, Berkowitz, R, Cramer, D, Feltmate, C, Horowitz, N, Kibel, A, Muto, M, Raut, CP, Malykh, A, Barnholtz-Sloan, JS, Barrett, W, Devine, K, Fulop, J, Ostrom, QT, Shimmel, K, Wolinsky, Y, Sloan, AE, De Rose, A, Giuliante, F, Goodman, M, Karlan, BY, Hagedorn, CH, Eckman, J, Harr, J, Myers, J, Tucker, K, Zach, LA, Deyarmin, B, Hu, H, Kvecher, L, Larson, C, Mural, RJ, Somiari, S, Vicha, A, Zelinka, T, Bennett, J, Iacocca, M, Rabeno, B, Swanson, P, Latour, M, Lacombe, L, Têtu, B, Bergeron, A, McGraw, M, Staugaitis, SM, Chabot, J, Hibshoosh, H, Sepulveda, A, Su, T, Wang, T, Potapova, O, Voronina, O, Desjardins, L, Mariani, O, Roman-Roman, S, Sastre, X, Stern, M-H, Cheng, F, Signoretti, S, Berchuck, A, Bigner, D, Lipp, E, Marks, J, McCall, S, McLendon, R, Secord, A, Sharp, A, Behera, M, Brat, DJ, Chen, A, Delman, K, Force, S, Khuri, F, Magliocca, K, Maithel, S, Olson, JJ, Owonikoko, T, Pickens, A, Ramalingam, S, Shin, DM, Sica, G, Van Meir, EG, Zhang, H, Eijckenboom, W, Gillis, A, Korpershoek, E, Looijenga, L, Oosterhuis, W, Stoop, H, van Kessel, KE, Zwarthoff, EC, Calatozzolo, C, Cuppini, L, Cuzzubbo, S, DiMeco, F, Finocchiaro, G, Mattei, L, Perin, A, Pollo, B, Chen, C, Houck, J, Lohavanichbutr, P, Hartmann, A, Stoehr, C, Stoehr, R, Taubert, H, Wach, S, Wullich, B, Kycler, W, Murawa, D, Wiznerowicz, M, Chung, K, Edenfield, WJ, Martin, J, Baudin, E, Bubley, G, Bueno, R, De Rienzo, A, Richards, WG, Kalkanis, S, Mikkelsen, T, Noushmehr, H, Scarpace, L, Girard, N, Aymerich, M, Campo, E, Giné, E, Guillermo, AL, Van Bang, N, Hanh, PT, Phu, BD, Tang, Y, Colman, H, Evason, K, Dottino, PR, Martignetti, JA, Gabra, H, Juhl, H, Akeredolu, T, Stepa, S, Hoon, D, Ahn, K, Kang, KJ, Beuschlein, F, Breggia, A, Birrer, M, Bell, D, Borad, M, Bryce, AH, Castle, E, Chandan, V, Cheville, J, Copland, JA, Farnell, M, Flotte, T, Giama, N, Ho, T, Kendrick, M, Kocher, J-P, Kopp, K, Moser, C, Nagorney, D, O’Brien, D, O’Neill, BP, Patel, T, Petersen, G, Que, F, Rivera, M, Roberts, L, Smallridge, R, Smyrk, T, Stanton, M, Thompson, RH, Torbenson, M, Yang, JD, Zhang, L, Brimo, F, Ajani, JA, Gonzalez, AMA, Behrens, C, Bondaruk, J, Broaddus, R, Czerniak, B, Esmaeli, B, Fujimoto, J, Gershenwald, J, Guo, C, Lazar, AJ, Logothetis, C, Meric-Bernstam, F, Moran, C, Ramondetta, L, Rice, D, Sood, A, Tamboli, P, Thompson, T, Troncoso, P, Tsao, A, Wistuba, I, Carter, C, Haydu, L, Hersey, P, Jakrot, V, Kakavand, H, Kefford, R, Lee, K, Long, G, Mann, G, Quinn, M, Saw, R, Scolyer, R, Shannon, K, Spillane, A, Stretch, J, Synott, M, Thompson, J, Wilmott, J, Al-Ahmadie, H, Chan, TA, Ghossein, R, Gopalan, A, Levine, DA, Reuter, V, Singer, S, Singh, B, Tien, NV, Broudy, T, Mirsaidi, C, Nair, P, Drwiega, P, Miller, J, and Smith, J et al.. "A Pan-Cancer Analysis of Enhancer Expression in Nearly 9000 Patient Samples." Cell 173, no. 2 (April 2018): 386-399.e12. Full Text
- Chiu, H-S, Somvanshi, S, Patel, E, Chen, T-W, Singh, VP, Zorman, B, Patil, SL, Pan, Y, Chatterjee, SS, Sood, AK, Gunaratne, PH, Sumazin, P, Caesar-Johnson, SJ, Demchok, JA, Felau, I, Kasapi, M, Ferguson, ML, Hutter, CM, Sofia, HJ, Tarnuzzer, R, Wang, Z, Yang, L, Zenklusen, JC, Zhang, JJ, Chudamani, S, Liu, J, Lolla, L, Naresh, R, Pihl, T, Sun, Q, Wan, Y, Wu, Y, Cho, J, DeFreitas, T, Frazer, S, Gehlenborg, N, Getz, G, Heiman, DI, Kim, J, Lawrence, MS, Lin, P, Meier, S, Noble, MS, Saksena, G, Voet, D, Zhang, H, Bernard, B, Chambwe, N, Dhankani, V, Knijnenburg, T, Kramer, R, Leinonen, K, Liu, Y, Miller, M, Reynolds, S, Shmulevich, I, Thorsson, V, Zhang, W, Akbani, R, Broom, BM, Hegde, AM, Ju, Z, Kanchi, RS, Korkut, A, Li, J, Liang, H, Ling, S, Liu, W, Lu, Y, Mills, GB, Ng, K-S, Rao, A, Ryan, M, Wang, J, Weinstein, JN, Zhang, J, Abeshouse, A, Armenia, J, Chakravarty, D, Chatila, WK, de Bruijn, I, Gao, J, Gross, BE, Heins, ZJ, Kundra, R, La, K, Ladanyi, M, Luna, A, Nissan, MG, Ochoa, A, Phillips, SM, Reznik, E, Sanchez-Vega, F, Sander, C, Schultz, N, Sheridan, R, Sumer, SO, Sun, Y, Taylor, BS, Wang, J, Zhang, H, Anur, P, Peto, M, Spellman, P, Benz, C, Stuart, JM, Wong, CK, Yau, C, Hayes, DN, Parker, JS, Wilkerson, MD, Ally, A, Balasundaram, M, Bowlby, R, Brooks, D, Carlsen, R, Chuah, E, Dhalla, N, Holt, R, Jones, SJM, Kasaian, K, Lee, D, Ma, Y, Marra, MA, Mayo, M, Moore, RA, Mungall, AJ, Mungall, K, Robertson, AG, Sadeghi, S, Schein, JE, Sipahimalani, P, Tam, A, Thiessen, N, Tse, K, Wong, T, Berger, AC, Beroukhim, R, Cherniack, AD, Cibulskis, C, Gabriel, SB, Gao, GF, Ha, G, Meyerson, M, Schumacher, SE, Shih, J, Kucherlapati, MH, Kucherlapati, RS, Baylin, S, Cope, L, Danilova, L, Bootwalla, MS, Lai, PH, Maglinte, DT, Van Den Berg, DJ, Weisenberger, DJ, Auman, JT, Balu, S, Bodenheimer, T, Fan, C, Hoadley, KA, Hoyle, AP, Jefferys, SR, Jones, CD, Meng, S, Mieczkowski, PA, Mose, LE, Perou, AH, Perou, CM, Roach, J, Shi, Y, Simons, JV, Skelly, T, Soloway, MG, Tan, D, Veluvolu, U, Fan, H, Hinoue, T, Laird, PW, Shen, H, Zhou, W, Bellair, M, Chang, K, Covington, K, Creighton, CJ, Dinh, H, Doddapaneni, H, Donehower, LA, Drummond, J, Gibbs, RA, Glenn, R, Hale, W, Han, Y, Hu, J, Korchina, V, Lee, S, Lewis, L, Li, W, Liu, X, Morgan, M, Morton, D, Muzny, D, Santibanez, J, Sheth, M, Shinbrot, E, Wang, L, Wang, M, Wheeler, DA, Xi, L, Zhao, F, Hess, J, Appelbaum, EL, Bailey, M, Cordes, MG, Ding, L, Fronick, CC, Fulton, LA, Fulton, RS, Kandoth, C, Mardis, ER, McLellan, MD, Miller, CA, Schmidt, HK, Wilson, RK, Crain, D, Curley, E, Gardner, J, Lau, K, Mallery, D, Morris, S, Paulauskis, J, Penny, R, Shelton, C, Shelton, T, Sherman, M, Thompson, E, Yena, P, Bowen, J, Gastier-Foster, JM, Gerken, M, Leraas, KM, Lichtenberg, TM, Ramirez, NC, Wise, L, Zmuda, E, Corcoran, N, Costello, T, Hovens, C, Carvalho, AL, de Carvalho, AC, Fregnani, JH, Longatto-Filho, A, Reis, RM, Scapulatempo-Neto, C, Silveira, HCS, Vidal, DO, Burnette, A, Eschbacher, J, Hermes, B, Noss, A, Singh, R, Anderson, ML, Castro, PD, Ittmann, M, Huntsman, D, Kohl, B, Le, X, Thorp, R, Andry, C, Duffy, ER, Lyadov, V, Paklina, O, Setdikova, G, Shabunin, A, Tavobilov, M, McPherson, C, Warnick, R, Berkowitz, R, Cramer, D, Feltmate, C, Horowitz, N, Kibel, A, Muto, M, Raut, CP, Malykh, A, Barnholtz-Sloan, JS, Barrett, W, Devine, K, Fulop, J, Ostrom, QT, Shimmel, K, Wolinsky, Y, Sloan, AE, De Rose, A, Giuliante, F, Goodman, M, Karlan, BY, Hagedorn, CH, Eckman, J, Harr, J, Myers, J, Tucker, K, Zach, LA, Deyarmin, B, Hu, H, Kvecher, L, Larson, C, Mural, RJ, Somiari, S, Vicha, A, Zelinka, T, Bennett, J, Iacocca, M, Rabeno, B, Swanson, P, Latour, M, Lacombe, L, Têtu, B, Bergeron, A, McGraw, M, Staugaitis, SM, Chabot, J, Hibshoosh, H, Sepulveda, A, Su, T, Wang, T, Potapova, O, Voronina, O, Desjardins, L, Mariani, O, Roman-Roman, S, Sastre, X, Stern, M-H, Cheng, F, Signoretti, S, Berchuck, A, Bigner, D, Lipp, E, Marks, J, McCall, S, McLendon, R, Secord, A, Sharp, A, Behera, M, Brat, DJ, Chen, A, Delman, K, Force, S, Khuri, F, Magliocca, K, Maithel, S, Olson, JJ, Owonikoko, T, Pickens, A, Ramalingam, S, Shin, DM, Sica, G, Van Meir, EG, Zhang, H, Eijckenboom, W, Gillis, A, Korpershoek, E, Looijenga, L, Oosterhuis, W, Stoop, H, van Kessel, KE, Zwarthoff, EC, Calatozzolo, C, Cuppini, L, Cuzzubbo, S, DiMeco, F, Finocchiaro, G, Mattei, L, Perin, A, Pollo, B, Chen, C, Houck, J, Lohavanichbutr, P, Hartmann, A, Stoehr, C, Stoehr, R, Taubert, H, Wach, S, Wullich, B, Kycler, W, Murawa, D, Wiznerowicz, M, Chung, K, Edenfield, WJ, Martin, J, Baudin, E, Bubley, G, Bueno, R, De Rienzo, A, Richards, WG, Kalkanis, S, Mikkelsen, T, Noushmehr, H, Scarpace, L, Girard, N, Aymerich, M, Campo, E, Giné, E, Guillermo, AL, Van Bang, N, Hanh, PT, Phu, BD, Tang, Y, Colman, H, Evason, K, Dottino, PR, Martignetti, JA, Gabra, H, Juhl, H, Akeredolu, T, Stepa, S, Hoon, D, Ahn, K, Kang, KJ, Beuschlein, F, Breggia, A, Birrer, M, Bell, D, Borad, M, Bryce, AH, Castle, E, Chandan, V, Cheville, J, Copland, JA, Farnell, M, Flotte, T, Giama, N, Ho, T, Kendrick, M, Kocher, J-P, Kopp, K, Moser, C, Nagorney, D, O’Brien, D, O’Neill, BP, Patel, T, Petersen, G, Que, F, Rivera, M, Roberts, L, Smallridge, R, Smyrk, T, Stanton, M, Thompson, RH, Torbenson, M, Yang, JD, Zhang, L, Brimo, F, Ajani, JA, Gonzalez, AMA, Behrens, C, Bondaruk, J, Broaddus, R, Czerniak, B, Esmaeli, B, Fujimoto, J, Gershenwald, J, Guo, C, Lazar, AJ, Logothetis, C, Meric-Bernstam, F, Moran, C, Ramondetta, L, Rice, D, Sood, A, Tamboli, P, Thompson, T, Troncoso, P, Tsao, A, Wistuba, I, Carter, C, Haydu, L, Hersey, P, Jakrot, V, Kakavand, H, Kefford, R, Lee, K, Long, G, Mann, G, Quinn, M, Saw, R, Scolyer, R, Shannon, K, Spillane, A, Stretch, J, Synott, M, Thompson, J, Wilmott, J, Al-Ahmadie, H, Chan, TA, Ghossein, R, Gopalan, A, Levine, DA, Reuter, V, and Singer, S et al.. "Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context." Cell Reports 23, no. 1 (April 2018): 297-312.e12. Full Text
- Ding, L, Bailey, MH, Porta-Pardo, E, Thorsson, V, Colaprico, A, Bertrand, D, Gibbs, DL, Weerasinghe, A, Huang, K-L, Tokheim, C, Cortés-Ciriano, I, Jayasinghe, R, Chen, F, Yu, L, Sun, S, Olsen, C, Kim, J, Taylor, AM, Cherniack, AD, Akbani, R, Suphavilai, C, Nagarajan, N, Stuart, JM, Mills, GB, Wyczalkowski, MA, Vincent, BG, Hutter, CM, Zenklusen, JC, Hoadley, KA, Wendl, MC, Shmulevich, L, Lazar, AJ, Wheeler, DA, Getz, G, Caesar-Johnson, SJ, Demchok, JA, Felau, I, Kasapi, M, Ferguson, ML, Sofia, HJ, Tarnuzzer, R, Wang, Z, Yang, L, Zenklusen, JC, Zhang, JJ, Chudamani, S, Liu, J, Lolla, L, Naresh, R, Pihl, T, Sun, Q, Wan, Y, Wu, Y, Cho, J, DeFreitas, T, Frazer, S, Gehlenborg, N, Heiman, DI, Lawrence, MS, Lin, P, Meier, S, Noble, MS, Saksena, G, Voet, D, Zhang, H, Bernard, B, Chambwe, N, Dhankani, V, Knijnenburg, T, Kramer, R, Leinonen, K, Liu, Y, Miller, M, Reynolds, S, Shmulevich, I, Zhang, W, Broom, BM, Hegde, AM, Ju, Z, Kanchi, RS, Korkut, A, Li, J, Liang, H, Ling, S, Liu, W, Lu, Y, Ng, K-S, Rao, A, Ryan, M, Wang, J, Weinstein, JN, Zhang, J, Abeshouse, A, Armenia, J, Chakravarty, D, Chatila, WK, de Bruijn, I, Gao, J, Gross, BE, Heins, ZJ, Kundra, R, La, K, Ladanyi, M, Luna, A, Nissan, MG, Ochoa, A, Phillips, SM, Reznik, E, Sanchez-Vega, F, Sander, C, Schultz, N, Sheridan, R, Sumer, SO, Sun, Y, Taylor, BS, Wang, J, Zhang, H, Anur, P, Peto, M, Spellman, P, Benz, C, Wong, CK, Yau, C, Hayes, DN, Parker, JS, Wilkerson, MD, Ally, A, Balasundaram, M, Bowlby, R, Brooks, D, Carlsen, R, Chuah, E, Dhalla, N, Holt, R, Jones, SJM, Kasaian, K, Lee, D, Ma, Y, Marra, MA, Mayo, M, Moore, RA, Mungall, AJ, Mungall, K, Robertson, AG, Sadeghi, S, Schein, JE, Sipahimalani, P, Tam, A, Thiessen, N, Tse, K, Wong, T, Berger, AC, Beroukhim, R, Cibulskis, C, Gabriel, SB, Gao, GF, Ha, G, Meyerson, M, Schumacher, SE, Shih, J, Kucherlapati, MH, Kucherlapati, RS, Baylin, S, Cope, L, Danilova, L, Bootwalla, MS, Lai, PH, Maglinte, DT, Van Den Berg, DJ, Weisenberger, DJ, Auman, JT, Balu, S, Bodenheimer, T, Fan, C, Hoyle, AP, Jefferys, SR, Jones, CD, Meng, S, Mieczkowski, PA, Mose, LE, Perou, AH, Perou, CM, Roach, J, Shi, Y, Simons, JV, Skelly, T, Soloway, MG, Tan, D, Veluvolu, U, Fan, H, Hinoue, T, Laird, PW, Shen, H, Zhou, W, Bellair, M, Chang, K, Covington, K, Creighton, CJ, Dinh, H, Doddapaneni, H, Donehower, LA, Drummond, J, Gibbs, RA, Glenn, R, Hale, W, Han, Y, Hu, J, Korchina, V, Lee, S, Lewis, L, Li, W, Liu, X, Morgan, M, Morton, D, Muzny, D, Santibanez, J, Sheth, M, Shinbrot, E, Wang, L, Wang, M, Xi, L, Zhao, F, Hess, J, Appelbaum, EL, Bailey, M, Cordes, MG, Fronick, CC, Fulton, LA, Fulton, RS, Kandoth, C, Mardis, ER, McLellan, MD, Miller, CA, Schmidt, HK, Wilson, RK, Crain, D, Curley, E, Gardner, J, Lau, K, Mallery, D, Morris, S, Paulauskis, J, Penny, R, Shelton, C, Shelton, T, Sherman, M, Thompson, E, Yena, P, Bowen, J, Gastier-Foster, JM, Gerken, M, Leraas, KM, Lichtenberg, TM, Ramirez, NC, Wise, L, Zmuda, E, Corcoran, N, Costello, T, Hovens, C, Carvalho, AL, de Carvalho, AC, Fregnani, JH, Longatto-Filho, A, Reis, RM, Scapulatempo-Neto, C, Silveira, HCS, Vidal, DO, Burnette, A, Eschbacher, J, Hermes, B, Noss, A, Singh, R, Anderson, ML, Castro, PD, Ittmann, M, Huntsman, D, Kohl, B, Le, X, Thorp, R, Andry, C, Duffy, ER, Lyadov, V, Paklina, O, Setdikova, G, Shabunin, A, Tavobilov, M, McPherson, C, Warnick, R, Berkowitz, R, Cramer, D, Feltmate, C, Horowitz, N, Kibel, A, Muto, M, Raut, CP, Malykh, A, Barnholtz-Sloan, JS, Barrett, W, Devine, K, Fulop, J, Ostrom, QT, Shimmel, K, Wolinsky, Y, Sloan, AE, De Rose, A, Giuliante, F, Goodman, M, Karlan, BY, Hagedorn, CH, Eckman, J, Harr, J, Myers, J, Tucker, K, Zach, LA, Deyarmin, B, Hu, H, Kvecher, L, Larson, C, Mural, RJ, Somiari, S, Vicha, A, Zelinka, T, Bennett, J, Iacocca, M, Rabeno, B, Swanson, P, Latour, M, Lacombe, L, Têtu, B, Bergeron, A, McGraw, M, Staugaitis, SM, Chabot, J, Hibshoosh, H, Sepulveda, A, Su, T, Wang, T, Potapova, O, Voronina, O, Desjardins, L, Mariani, O, Roman-Roman, S, Sastre, X, Stern, M-H, Cheng, F, Signoretti, S, Berchuck, A, Bigner, D, Lipp, E, Marks, J, McCall, S, McLendon, R, Secord, A, Sharp, A, Behera, M, Brat, DJ, Chen, A, Delman, K, Force, S, Khuri, F, Magliocca, K, Maithel, S, Olson, JJ, Owonikoko, T, Pickens, A, Ramalingam, S, Shin, DM, Sica, G, Van Meir, EG, Zhang, H, Eijckenboom, W, Gillis, A, Korpershoek, E, Looijenga, L, Oosterhuis, W, Stoop, H, van Kessel, KE, Zwarthoff, EC, Calatozzolo, C, Cuppini, L, Cuzzubbo, S, DiMeco, F, Finocchiaro, G, Mattei, L, Perin, A, Pollo, B, Chen, C, Houck, J, Lohavanichbutr, P, Hartmann, A, Stoehr, C, Stoehr, R, Taubert, H, Wach, S, Wullich, B, Kycler, W, Murawa, D, Wiznerowicz, M, Chung, K, Edenfield, WJ, Martin, J, Baudin, E, Bubley, G, Bueno, R, De Rienzo, A, Richards, WG, Kalkanis, S, Mikkelsen, T, Noushmehr, H, Scarpace, L, Girard, N, Aymerich, M, Campo, E, Giné, E, Guillermo, AL, Van Bang, N, Hanh, PT, Phu, BD, Tang, Y, Colman, H, Evason, K, Dottino, PR, Martignetti, JA, Gabra, H, Juhl, H, Akeredolu, T, Stepa, S, Hoon, D, Ahn, K, Kang, KJ, Beuschlein, F, Breggia, A, Birrer, M, Bell, D, Borad, M, Bryce, AH, Castle, E, Chandan, V, Cheville, J, Copland, JA, Farnell, M, Flotte, T, Giama, N, Ho, T, Kendrick, M, Kocher, J-P, Kopp, K, Moser, C, Nagorney, D, O’Brien, D, O’Neill, BP, Patel, T, Petersen, G, Que, F, Rivera, M, Roberts, L, Smallridge, R, Smyrk, T, Stanton, M, Thompson, RH, Torbenson, M, Yang, JD, Zhang, L, Brimo, F, Ajani, JA, Gonzalez, AMA, Behrens, C, Bondaruk, J, Broaddus, R, Czerniak, B, Esmaeli, B, Fujimoto, J, Gershenwald, J, Guo, C, Logothetis, C, Meric-Bernstam, F, Moran, C, Ramondetta, L, Rice, D, Sood, A, Tamboli, P, Thompson, T, Troncoso, P, Tsao, A, Wistuba, I, Carter, C, Haydu, L, Hersey, P, Jakrot, V, Kakavand, H, Kefford, R, Lee, K, Long, G, Mann, G, Quinn, M, Saw, R, Scolyer, R, Shannon, K, Spillane, A, and Stretch, J et al.. "Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics." Cell 173, no. 2 (April 2018): 305-320.e10. Full Text
- Gao, Q, Liang, W-W, Foltz, SM, Mutharasu, G, Jayasinghe, RG, Cao, S, Liao, W-W, Reynolds, SM, Wyczalkowski, MA, Yao, L, Yu, L, Sun, SQ, Chen, K, Lazar, AJ, Fields, RC, Wendl, MC, Van Tine, BA, Vij, R, Chen, F, Nykter, M, Shmulevich, I, Ding, L, Caesar-Johnson, SJ, Demchok, JA, Felau, I, Kasapi, M, Ferguson, ML, Hutter, CM, Sofia, HJ, Tarnuzzer, R, Wang, Z, Yang, L, Zenklusen, JC, Zhang, JJ, Chudamani, S, Liu, J, Lolla, L, Naresh, R, Pihl, T, Sun, Q, Wan, Y, Wu, Y, Cho, J, DeFreitas, T, Frazer, S, Gehlenborg, N, Getz, G, Heiman, DI, Kim, J, Lawrence, MS, Lin, P, Meier, S, Noble, MS, Saksena, G, Voet, D, Zhang, H, Bernard, B, Chambwe, N, Dhankani, V, Knijnenburg, T, Kramer, R, Leinonen, K, Liu, Y, Miller, M, Reynolds, S, Thorsson, V, Zhang, W, Akbani, R, Broom, BM, Hegde, AM, Ju, Z, Kanchi, RS, Korkut, A, Li, J, Liang, H, Ling, S, Liu, W, Lu, Y, Mills, GB, Ng, K-S, Rao, A, Ryan, M, Wang, J, Weinstein, JN, Zhang, J, Abeshouse, A, Armenia, J, Chakravarty, D, Chatila, WK, de Bruijn, I, Gao, J, Gross, BE, Heins, ZJ, Kundra, R, La, K, Ladanyi, M, Luna, A, Nissan, MG, Ochoa, A, Phillips, SM, Reznik, E, Sanchez-Vega, F, Sander, C, Schultz, N, Sheridan, R, Sumer, SO, Sun, Y, Taylor, BS, Wang, J, Zhang, H, Anur, P, Peto, M, Spellman, P, Benz, C, Stuart, JM, Wong, CK, Yau, C, Hayes, DN, Parker, JS, Wilkerson, MD, Ally, A, Balasundaram, M, Bowlby, R, Brooks, D, Carlsen, R, Chuah, E, Dhalla, N, Holt, R, Jones, SJM, Kasaian, K, Lee, D, Ma, Y, Marra, MA, Mayo, M, Moore, RA, Mungall, AJ, Mungall, K, Robertson, AG, Sadeghi, S, Schein, JE, Sipahimalani, P, Tam, A, Thiessen, N, Tse, K, Wong, T, Berger, AC, Beroukhim, R, Cherniack, AD, Cibulskis, C, Gabriel, SB, Gao, GF, Ha, G, Meyerson, M, Schumacher, SE, Shih, J, Kucherlapati, MH, Kucherlapati, RS, Baylin, S, Cope, L, Danilova, L, Bootwalla, MS, Lai, PH, Maglinte, DT, Van Den Berg, DJ, Weisenberger, DJ, Auman, JT, Balu, S, Bodenheimer, T, Fan, C, Hoadley, KA, Hoyle, AP, Jefferys, SR, Jones, CD, Meng, S, Mieczkowski, PA, Mose, LE, Perou, AH, Perou, CM, Roach, J, Shi, Y, Simons, JV, Skelly, T, Soloway, MG, Tan, D, Veluvolu, U, Fan, H, Hinoue, T, Laird, PW, Shen, H, Zhou, W, Bellair, M, Chang, K, Covington, K, Creighton, CJ, Dinh, H, Doddapaneni, H, Donehower, LA, Drummond, J, Gibbs, RA, Glenn, R, Hale, W, Han, Y, Hu, J, Korchina, V, Lee, S, Lewis, L, Li, W, Liu, X, Morgan, M, Morton, D, Muzny, D, Santibanez, J, Sheth, M, Shinbrot, E, Wang, L, Wang, M, Wheeler, DA, Xi, L, Zhao, F, Hess, J, Appelbaum, EL, Bailey, M, Cordes, MG, Fronick, CC, Fulton, LA, Fulton, RS, Kandoth, C, Mardis, ER, McLellan, MD, Miller, CA, Schmidt, HK, Wilson, RK, Crain, D, Curley, E, Gardner, J, Lau, K, Mallery, D, Morris, S, Paulauskis, J, Penny, R, Shelton, C, Shelton, T, Sherman, M, Thompson, E, Yena, P, Bowen, J, Gastier-Foster, JM, Gerken, M, Leraas, KM, Lichtenberg, TM, Ramirez, NC, Wise, L, Zmuda, E, Corcoran, N, Costello, T, Hovens, C, Carvalho, AL, de Carvalho, AC, Fregnani, JH, Longatto-Filho, A, Reis, RM, Scapulatempo-Neto, C, Silveira, HCS, Vidal, DO, Burnette, A, Eschbacher, J, Hermes, B, Noss, A, Singh, R, Anderson, ML, Castro, PD, Ittmann, M, Huntsman, D, Kohl, B, Le, X, Thorp, R, Andry, C, Duffy, ER, Lyadov, V, Paklina, O, Setdikova, G, Shabunin, A, Tavobilov, M, McPherson, C, Warnick, R, Berkowitz, R, Cramer, D, Feltmate, C, Horowitz, N, Kibel, A, Muto, M, Raut, CP, Malykh, A, Barnholtz-Sloan, JS, Barrett, W, Devine, K, Fulop, J, Ostrom, QT, Shimmel, K, Wolinsky, Y, Sloan, AE, De Rose, A, Giuliante, F, Goodman, M, Karlan, BY, Hagedorn, CH, Eckman, J, Harr, J, Myers, J, Tucker, K, Zach, LA, Deyarmin, B, Hu, H, Kvecher, L, Larson, C, Mural, RJ, Somiari, S, Vicha, A, Zelinka, T, Bennett, J, Iacocca, M, Rabeno, B, Swanson, P, Latour, M, Lacombe, L, Têtu, B, Bergeron, A, McGraw, M, Staugaitis, SM, Chabot, J, Hibshoosh, H, Sepulveda, A, Su, T, Wang, T, Potapova, O, Voronina, O, Desjardins, L, Mariani, O, Roman-Roman, S, Sastre, X, Stern, M-H, Cheng, F, Signoretti, S, Berchuck, A, Bigner, D, Lipp, E, Marks, J, McCall, S, McLendon, R, Secord, A, Sharp, A, Behera, M, Brat, DJ, Chen, A, Delman, K, Force, S, Khuri, F, Magliocca, K, Maithel, S, Olson, JJ, Owonikoko, T, Pickens, A, Ramalingam, S, Shin, DM, Sica, G, Van Meir, EG, Zhang, H, Eijckenboom, W, Gillis, A, Korpershoek, E, Looijenga, L, Oosterhuis, W, Stoop, H, van Kessel, KE, Zwarthoff, EC, Calatozzolo, C, Cuppini, L, Cuzzubbo, S, DiMeco, F, Finocchiaro, G, Mattei, L, Perin, A, Pollo, B, Chen, C, Houck, J, Lohavanichbutr, P, Hartmann, A, Stoehr, C, Stoehr, R, Taubert, H, Wach, S, Wullich, B, Kycler, W, Murawa, D, Wiznerowicz, M, Chung, K, Edenfield, WJ, Martin, J, Baudin, E, Bubley, G, Bueno, R, De Rienzo, A, Richards, WG, Kalkanis, S, Mikkelsen, T, Noushmehr, H, Scarpace, L, Girard, N, Aymerich, M, Campo, E, Giné, E, Guillermo, AL, Van Bang, N, Hanh, PT, Phu, BD, Tang, Y, Colman, H, Evason, K, Dottino, PR, Martignetti, JA, Gabra, H, Juhl, H, Akeredolu, T, Stepa, S, Hoon, D, Ahn, K, Kang, KJ, Beuschlein, F, Breggia, A, Birrer, M, Bell, D, Borad, M, Bryce, AH, Castle, E, Chandan, V, Cheville, J, Copland, JA, Farnell, M, Flotte, T, Giama, N, Ho, T, Kendrick, M, Kocher, J-P, Kopp, K, Moser, C, Nagorney, D, O’Brien, D, O’Neill, BP, Patel, T, Petersen, G, Que, F, Rivera, M, Roberts, L, Smallridge, R, Smyrk, T, Stanton, M, Thompson, RH, Torbenson, M, Yang, JD, Zhang, L, Brimo, F, Ajani, JA, Gonzalez, AMA, Behrens, C, Bondaruk, J, Broaddus, R, Czerniak, B, Esmaeli, B, Fujimoto, J, Gershenwald, J, Guo, C, Logothetis, C, Meric-Bernstam, F, Moran, C, Ramondetta, L, Rice, D, Sood, A, Tamboli, P, Thompson, T, Troncoso, P, Tsao, A, Wistuba, I, Carter, C, Haydu, L, Hersey, P, Jakrot, V, Kakavand, H, Kefford, R, Lee, K, Long, G, Mann, G, Quinn, M, Saw, R, Scolyer, R, Shannon, K, Spillane, A, Stretch, J, Synott, M, Thompson, J, and Wilmott, J et al.. "Driver Fusions and Their Implications in the Development and Treatment of Human Cancers." Cell Reports 23, no. 1 (April 2018): 227-238.e3. Full Text
- Ge, Z, Leighton, JS, Wang, Y, Peng, X, Chen, Z, Chen, H, Sun, Y, Yao, F, Li, J, Zhang, H, Liu, J, Shriver, CD, Hu, H, Piwnica-Worms, H, Ma, L, Liang, H, Caesar-Johnson, SJ, Demchok, JA, Felau, I, Kasapi, M, Ferguson, ML, Hutter, CM, Sofia, HJ, Tarnuzzer, R, Wang, Z, Yang, L, Zenklusen, JC, Zhang, JJ, Chudamani, S, Liu, J, Lolla, L, Naresh, R, Pihl, T, Sun, Q, Wan, Y, Wu, Y, Cho, J, DeFreitas, T, Frazer, S, Gehlenborg, N, Getz, G, Heiman, DI, Kim, J, Lawrence, MS, Lin, P, Meier, S, Noble, MS, Saksena, G, Voet, D, Zhang, H, Bernard, B, Chambwe, N, Dhankani, V, Knijnenburg, T, Kramer, R, Leinonen, K, Liu, Y, Miller, M, Reynolds, S, Shmulevich, I, Thorsson, V, Zhang, W, Akbani, R, Broom, BM, Hegde, AM, Ju, Z, Kanchi, RS, Korkut, A, Ling, S, Liu, W, Lu, Y, Mills, GB, Ng, K-S, Rao, A, Ryan, M, Wang, J, Weinstein, JN, Zhang, J, Abeshouse, A, Armenia, J, Chakravarty, D, Chatila, WK, de Bruijn, I, Gao, J, Gross, BE, Heins, ZJ, Kundra, R, La, K, Ladanyi, M, Luna, A, Nissan, MG, Ochoa, A, Phillips, SM, Reznik, E, Sanchez-Vega, F, Sander, C, Schultz, N, Sheridan, R, Sumer, SO, Sun, Y, Taylor, BS, Wang, J, Zhang, H, Anur, P, Peto, M, Spellman, P, Benz, C, Stuart, JM, Wong, CK, Yau, C, Hayes, DN, Parker, JS, Wilkerson, MD, Ally, A, Balasundaram, M, Bowlby, R, Brooks, D, Carlsen, R, Chuah, E, Dhalla, N, Holt, R, Jones, SJM, Kasaian, K, Lee, D, Ma, Y, Marra, MA, Mayo, M, Moore, RA, Mungall, AJ, Mungall, K, Robertson, AG, Sadeghi, S, Schein, JE, Sipahimalani, P, Tam, A, Thiessen, N, Tse, K, Wong, T, Berger, AC, Beroukhim, R, Cherniack, AD, Cibulskis, C, Gabriel, SB, Gao, GF, Ha, G, Meyerson, M, Schumacher, SE, Shih, J, Kucherlapati, MH, Kucherlapati, RS, Baylin, S, Cope, L, Danilova, L, Bootwalla, MS, Lai, PH, Maglinte, DT, Van Den Berg, DJ, Weisenberger, DJ, Auman, JT, Balu, S, Bodenheimer, T, Fan, C, Hoadley, KA, Hoyle, AP, Jefferys, SR, Jones, CD, Meng, S, Mieczkowski, PA, Mose, LE, Perou, AH, Perou, CM, Roach, J, Shi, Y, Simons, JV, Skelly, T, Soloway, MG, Tan, D, Veluvolu, U, Fan, H, Hinoue, T, Laird, PW, Shen, H, Zhou, W, Bellair, M, Chang, K, Covington, K, Creighton, CJ, Dinh, H, Doddapaneni, H, Donehower, LA, Drummond, J, Gibbs, RA, Glenn, R, Hale, W, Han, Y, Hu, J, Korchina, V, Lee, S, Lewis, L, Li, W, Liu, X, Morgan, M, Morton, D, Muzny, D, Santibanez, J, Sheth, M, Shinbrot, E, Wang, L, Wang, M, Wheeler, DA, Xi, L, Zhao, F, Hess, J, Appelbaum, EL, Bailey, M, Cordes, MG, Ding, L, Fronick, CC, Fulton, LA, Fulton, RS, Kandoth, C, Mardis, ER, McLellan, MD, Miller, CA, Schmidt, HK, Wilson, RK, Crain, D, Curley, E, Gardner, J, Lau, K, Mallery, D, Morris, S, Paulauskis, J, Penny, R, Shelton, C, Shelton, T, Sherman, M, Thompson, E, Yena, P, Bowen, J, Gastier-Foster, JM, Gerken, M, Leraas, KM, Lichtenberg, TM, Ramirez, NC, Wise, L, Zmuda, E, Corcoran, N, Costello, T, Hovens, C, Carvalho, AL, de Carvalho, AC, Fregnani, JH, Longatto-Filho, A, Reis, RM, Scapulatempo-Neto, C, Silveira, HCS, Vidal, DO, Burnette, A, Eschbacher, J, Hermes, B, Noss, A, Singh, R, Anderson, ML, Castro, PD, Ittmann, M, Huntsman, D, Kohl, B, Le, X, Thorp, R, Andry, C, Duffy, ER, Lyadov, V, Paklina, O, Setdikova, G, Shabunin, A, Tavobilov, M, McPherson, C, Warnick, R, Berkowitz, R, Cramer, D, Feltmate, C, Horowitz, N, Kibel, A, Muto, M, Raut, CP, Malykh, A, Barnholtz-Sloan, JS, Barrett, W, Devine, K, Fulop, J, Ostrom, QT, Shimmel, K, Wolinsky, Y, Sloan, AE, De Rose, A, Giuliante, F, Goodman, M, Karlan, BY, Hagedorn, CH, Eckman, J, Harr, J, Myers, J, Tucker, K, Zach, LA, Deyarmin, B, Kvecher, L, Larson, C, Mural, RJ, Somiari, S, Vicha, A, Zelinka, T, Bennett, J, Iacocca, M, Rabeno, B, Swanson, P, Latour, M, Lacombe, L, Têtu, B, Bergeron, A, McGraw, M, Staugaitis, SM, Chabot, J, Hibshoosh, H, Sepulveda, A, Su, T, Wang, T, Potapova, O, Voronina, O, Desjardins, L, Mariani, O, Roman-Roman, S, Sastre, X, Stern, M-H, Cheng, F, Signoretti, S, Berchuck, A, Bigner, D, Lipp, E, Marks, J, McCall, S, McLendon, R, Secord, A, Sharp, A, Behera, M, Brat, DJ, Chen, A, Delman, K, Force, S, Khuri, F, Magliocca, K, Maithel, S, Olson, JJ, Owonikoko, T, Pickens, A, Ramalingam, S, Shin, DM, Sica, G, Van Meir, EG, Zhang, H, Eijckenboom, W, Gillis, A, Korpershoek, E, Looijenga, L, Oosterhuis, W, Stoop, H, van Kessel, KE, Zwarthoff, EC, Calatozzolo, C, Cuppini, L, Cuzzubbo, S, DiMeco, F, Finocchiaro, G, Mattei, L, Perin, A, Pollo, B, Chen, C, Houck, J, Lohavanichbutr, P, Hartmann, A, Stoehr, C, Stoehr, R, Taubert, H, Wach, S, Wullich, B, Kycler, W, Murawa, D, Wiznerowicz, M, Chung, K, Edenfield, WJ, Martin, J, Baudin, E, Bubley, G, Bueno, R, De Rienzo, A, Richards, WG, Kalkanis, S, Mikkelsen, T, Noushmehr, H, Scarpace, L, Girard, N, Aymerich, M, Campo, E, Giné, E, Guillermo, AL, Van Bang, N, Hanh, PT, Phu, BD, Tang, Y, Colman, H, Evason, K, Dottino, PR, Martignetti, JA, Gabra, H, Juhl, H, Akeredolu, T, Stepa, S, Hoon, D, Ahn, K, Kang, KJ, Beuschlein, F, Breggia, A, Birrer, M, Bell, D, Borad, M, Bryce, AH, Castle, E, Chandan, V, Cheville, J, Copland, JA, Farnell, M, Flotte, T, Giama, N, Ho, T, Kendrick, M, Kocher, J-P, Kopp, K, Moser, C, Nagorney, D, O’Brien, D, O’Neill, BP, Patel, T, Petersen, G, Que, F, Rivera, M, Roberts, L, Smallridge, R, Smyrk, T, Stanton, M, Thompson, RH, Torbenson, M, Yang, JD, Zhang, L, Brimo, F, Ajani, JA, Gonzalez, AMA, Behrens, C, Bondaruk, J, Broaddus, R, Czerniak, B, Esmaeli, B, Fujimoto, J, Gershenwald, J, Guo, C, Lazar, AJ, Logothetis, C, Meric-Bernstam, F, Moran, C, Ramondetta, L, Rice, D, Sood, A, Tamboli, P, Thompson, T, Troncoso, P, Tsao, A, Wistuba, I, Carter, C, Haydu, L, Hersey, P, Jakrot, V, Kakavand, H, Kefford, R, Lee, K, Long, G, Mann, G, Quinn, M, Saw, R, Scolyer, R, Shannon, K, Spillane, A, Stretch, J, Synott, M, Thompson, J, Wilmott, J, Al-Ahmadie, H, Chan, TA, Ghossein, R, Gopalan, A, Levine, DA, and Reuter, V et al.. "Integrated Genomic Analysis of the Ubiquitin Pathway across Cancer Types." Cell Reports 23, no. 1 (April 2018): 213-226.e3. Full Text
- Hoadley, KA, Yau, C, Hinoue, T, Wolf, DM, Lazar, AJ, Drill, E, Shen, R, Taylor, AM, Cherniack, AD, Thorsson, V, Akbani, R, Bowlby, R, Wong, CK, Wiznerowicz, M, Sanchez-Vega, F, Robertson, AG, Schneider, BG, Lawrence, MS, Noushmehr, H, Malta, TM, Stuart, JM, Benz, CC, Laird, PW, Caesar-Johnson, SJ, Demchok, JA, Felau, I, Kasapi, M, Ferguson, ML, Hutter, CM, Sofia, HJ, Tarnuzzer, R, Wang, Z, Yang, L, Zenklusen, JC, Zhang, JJ, Chudamani, S, Liu, J, Lolla, L, Naresh, R, Pihl, T, Sun, Q, Wan, Y, Wu, Y, Cho, J, DeFreitas, T, Frazer, S, Gehlenborg, N, Getz, G, Heiman, DI, Kim, J, Lin, P, Meier, S, Noble, MS, Saksena, G, Voet, D, Zhang, H, Bernard, B, Chambwe, N, Dhankani, V, Knijnenburg, T, Kramer, R, Leinonen, K, Liu, Y, Miller, M, Reynolds, S, Shmulevich, I, Thorsson, V, Zhang, W, Broom, BM, Hegde, AM, Ju, Z, Kanchi, RS, Korkut, A, Li, J, Liang, H, Ling, S, Liu, W, Lu, Y, Mills, GB, Ng, K-S, Rao, A, Ryan, M, Wang, J, Weinstein, JN, Zhang, J, Abeshouse, A, Armenia, J, Chakravarty, D, Chatila, WK, de Bruijn, I, Gao, J, Gross, BE, Heins, ZJ, Kundra, R, La, K, Ladanyi, M, Luna, A, Nissan, MG, Ochoa, A, Phillips, SM, Reznik, E, Sander, C, Schultz, N, Sheridan, R, Sumer, SO, Sun, Y, Taylor, BS, Wang, J, Zhang, H, Anur, P, Peto, M, Spellman, P, Benz, C, Hayes, DN, Parker, JS, Wilkerson, MD, Ally, A, Balasundaram, M, Brooks, D, Carlsen, R, Chuah, E, Dhalla, N, Holt, R, Jones, SJM, Kasaian, K, Lee, D, Ma, Y, Marra, MA, Mayo, M, Moore, RA, Mungall, AJ, Mungall, K, Sadeghi, S, Schein, JE, Sipahimalani, P, Tam, A, Thiessen, N, Tse, K, Wong, T, Berger, AC, Beroukhim, R, Cibulskis, C, Gabriel, SB, Gao, GF, Ha, G, Meyerson, M, Schumacher, SE, Shih, J, Kucherlapati, MH, Kucherlapati, RS, Baylin, S, Cope, L, Danilova, L, Bootwalla, MS, Lai, PH, Maglinte, DT, Van Den Berg, DJ, Weisenberger, DJ, Auman, JT, Balu, S, Bodenheimer, T, Fan, C, Hoyle, AP, Jefferys, SR, Jones, CD, Meng, S, Mieczkowski, PA, Mose, LE, Perou, AH, Perou, CM, Roach, J, Shi, Y, Simons, JV, Skelly, T, Soloway, MG, Tan, D, Veluvolu, U, Fan, H, Shen, H, Zhou, W, Bellair, M, Chang, K, Covington, K, Creighton, CJ, Dinh, H, Doddapaneni, H, Donehower, LA, Drummond, J, Gibbs, RA, Glenn, R, Hale, W, Han, Y, Hu, J, Korchina, V, Lee, S, Lewis, L, Li, W, Liu, X, Morgan, M, Morton, D, Muzny, D, Santibanez, J, Sheth, M, Shinbrot, E, Wang, L, Wang, M, Wheeler, DA, Xi, L, Zhao, F, Hess, J, Appelbaum, EL, Bailey, M, Cordes, MG, Ding, L, Fronick, CC, Fulton, LA, Fulton, RS, Kandoth, C, Mardis, ER, McLellan, MD, Miller, CA, Schmidt, HK, Wilson, RK, Crain, D, Curley, E, Gardner, J, Lau, K, Mallery, D, Morris, S, Paulauskis, J, Penny, R, Shelton, C, Shelton, T, Sherman, M, Thompson, E, Yena, P, Bowen, J, Gastier-Foster, JM, Gerken, M, Leraas, KM, Lichtenberg, TM, Ramirez, NC, Wise, L, Zmuda, E, Corcoran, N, Costello, T, Hovens, C, Carvalho, AL, de Carvalho, AC, Fregnani, JH, Longatto-Filho, A, Reis, RM, Scapulatempo-Neto, C, Silveira, HCS, Vidal, DO, Burnette, A, Eschbacher, J, Hermes, B, Noss, A, Singh, R, Anderson, ML, Castro, PD, Ittmann, M, Huntsman, D, Kohl, B, Le, X, Thorp, R, Andry, C, Duffy, ER, Lyadov, V, Paklina, O, Setdikova, G, Shabunin, A, Tavobilov, M, McPherson, C, Warnick, R, Berkowitz, R, Cramer, D, Feltmate, C, Horowitz, N, Kibel, A, Muto, M, Raut, CP, Malykh, A, Barnholtz-Sloan, JS, Barrett, W, Devine, K, Fulop, J, Ostrom, QT, Shimmel, K, Wolinsky, Y, Sloan, AE, De Rose, A, Giuliante, F, Goodman, M, Karlan, BY, Hagedorn, CH, Eckman, J, Harr, J, Myers, J, Tucker, K, Zach, LA, Deyarmin, B, Hu, H, Kvecher, L, Larson, C, Mural, RJ, Somiari, S, Vicha, A, Zelinka, T, Bennett, J, Iacocca, M, Rabeno, B, Swanson, P, Latour, M, Lacombe, L, Têtu, B, Bergeron, A, McGraw, M, Staugaitis, SM, Chabot, J, Hibshoosh, H, Sepulveda, A, Su, T, Wang, T, Potapova, O, Voronina, O, Desjardins, L, Mariani, O, Roman-Roman, S, Sastre, X, Stern, M-H, Cheng, F, Signoretti, S, Berchuck, A, Bigner, D, Lipp, E, Marks, J, McCall, S, McLendon, R, Secord, A, Sharp, A, Behera, M, Brat, DJ, Chen, A, Delman, K, Force, S, Khuri, F, Magliocca, K, Maithel, S, Olson, JJ, Owonikoko, T, Pickens, A, Ramalingam, S, Shin, DM, Sica, G, Van Meir, EG, Zhang, H, Eijckenboom, W, Gillis, A, Korpershoek, E, Looijenga, L, Oosterhuis, W, Stoop, H, van Kessel, KE, Zwarthoff, EC, Calatozzolo, C, Cuppini, L, Cuzzubbo, S, DiMeco, F, Finocchiaro, G, Mattei, L, Perin, A, Pollo, B, Chen, C, Houck, J, Lohavanichbutr, P, Hartmann, A, Stoehr, C, Stoehr, R, Taubert, H, Wach, S, Wullich, B, Kycler, W, Murawa, D, Chung, K, Edenfield, WJ, Martin, J, Baudin, E, Bubley, G, Bueno, R, De Rienzo, A, Richards, WG, Kalkanis, S, Mikkelsen, T, Scarpace, L, Girard, N, Aymerich, M, Campo, E, Giné, E, Guillermo, AL, Van Bang, N, Hanh, PT, Phu, BD, Tang, Y, Colman, H, Evason, K, Dottino, PR, Martignetti, JA, Gabra, H, Juhl, H, Akeredolu, T, Stepa, S, Hoon, D, Ahn, K, Kang, KJ, Beuschlein, F, Breggia, A, Birrer, M, Bell, D, Borad, M, Bryce, AH, Castle, E, Chandan, V, Cheville, J, Copland, JA, Farnell, M, Flotte, T, Giama, N, Ho, T, Kendrick, M, Kocher, J-P, Kopp, K, Moser, C, Nagorney, D, O’Brien, D, O’Neill, BP, Patel, T, Petersen, G, Que, F, Rivera, M, Roberts, L, Smallridge, R, Smyrk, T, Stanton, M, Thompson, RH, Torbenson, M, Yang, JD, Zhang, L, Brimo, F, Ajani, JA, Gonzalez, AMA, Behrens, C, Bondaruk, O, Broaddus, R, Czerniak, B, Esmaeli, B, Fujimoto, J, Gershenwald, J, Guo, C, Logothetis, C, Meric-Bernstam, F, Moran, C, Ramondetta, L, Rice, D, Sood, A, Tamboli, P, Thompson, T, Troncoso, P, Tsao, A, Wistuba, I, Carter, C, Haydu, L, Hersey, P, Jakrot, V, Kakavand, H, Kefford, R, Lee, K, Long, G, Mann, G, Quinn, M, Saw, R, Scolyer, R, Shannon, K, Spillane, A, Stretch, J, Synott, M, Thompson, J, Wilmott, J, Al-Ahmadie, H, Chan, TA, Ghossein, R, Gopalan, A, Levine, DA, Reuter, V, Singer, S, Singh, B, Tien, NV, Broudy, T, and Mirsaidi, C et al.. "Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of Cancer." Cell 173, no. 2 (April 2018): 291-304.e6. Full Text
- Huang, K-L, Mashl, RJ, Wu, Y, Ritter, DI, Wang, J, Oh, C, Paczkowska, M, Reynolds, S, Wyczalkowski, MA, Oak, N, Scott, AD, Krassowski, M, Cherniack, AD, Houlahan, KE, Jayasinghe, R, Wang, L-B, Zhou, DC, Liu, D, Cao, S, Kim, YW, Koire, A, McMichael, JF, Hucthagowder, V, Kim, T-B, Hahn, A, Wang, C, McLellan, MD, Al-Mulla, F, Johnson, KJ, Lichtarge, O, Boutros, PC, Raphael, B, Lazar, AJ, Zhang, W, Wendl, MC, Govindan, R, Jain, S, Wheeler, D, Kulkarni, S, Dipersio, JF, Reimand, J, Meric-Bernstam, F, Chen, K, Shmulevich, I, Plon, SE, Chen, F, Ding, L, Caesar-Johnson, SJ, Demchok, JA, Felau, I, Kasapi, M, Ferguson, ML, Hutter, CM, Sofia, HJ, Tarnuzzer, R, Wang, Z, Yang, L, Zenklusen, JC, Zhang, JJ, Chudamani, S, Liu, J, Lolla, L, Naresh, R, Pihl, T, Sun, Q, Wan, Y, Wu, Y, Cho, J, DeFreitas, T, Frazer, S, Gehlenborg, N, Getz, G, Heiman, DI, Kim, J, Lawrence, MS, Lin, P, Meier, S, Noble, MS, Saksena, G, Voet, D, Zhang, H, Bernard, B, Chambwe, N, Dhankani, V, Knijnenburg, T, Kramer, R, Leinonen, K, Liu, Y, Miller, M, Thorsson, V, Akbani, R, Broom, BM, Hegde, AM, Ju, Z, Kanchi, RS, Korkut, A, Li, J, Liang, H, Ling, S, Liu, W, Lu, Y, Mills, GB, Ng, K-S, Rao, A, Ryan, M, Wang, J, Weinstein, JN, Zhang, J, Abeshouse, A, Armenia, J, Chakravarty, D, Chatila, WK, de Bruijn, I, Gao, J, Gross, BE, Heins, ZJ, Kundra, R, La, K, Ladanyi, M, Luna, A, Nissan, MG, Ochoa, A, Phillips, SM, Reznik, E, Sanchez-Vega, F, Sander, C, Schultz, N, Sheridan, R, Sumer, SO, Sun, Y, Taylor, BS, Wang, J, Zhang, H, Anur, P, Peto, M, Spellman, P, Benz, C, Stuart, JM, Wong, CK, Yau, C, Hayes, DN, Parker, JS, Wilkerson, MD, Ally, A, Balasundaram, M, Bowlby, R, Brooks, D, Carlsen, R, Chuah, E, Dhalla, N, Holt, R, Jones, SJM, Kasaian, K, Lee, D, Ma, Y, Marra, MA, Mayo, M, Moore, RA, Mungall, AJ, Mungall, K, Robertson, AG, Sadeghi, S, Schein, JE, Sipahimalani, P, Tam, A, Thiessen, N, Tse, K, Wong, T, Berger, AC, Beroukhim, R, Cibulskis, C, Gabriel, SB, Gao, GF, Ha, G, Meyerson, M, Schumacher, SE, Shih, J, Kucherlapati, MH, Kucherlapati, RS, Baylin, S, Cope, L, Danilova, L, Bootwalla, MS, Lai, PH, Maglinte, DT, Van Den Berg, DJ, Weisenberger, DJ, Auman, JT, Balu, S, Bodenheimer, T, Fan, C, Hoadley, KA, Hoyle, AP, Jefferys, SR, Jones, CD, Meng, S, Mieczkowski, PA, Mose, LE, Perou, AH, Perou, CM, Roach, J, Shi, Y, Simons, JV, Skelly, T, Soloway, MG, Tan, D, Veluvolu, U, Fan, H, Hinoue, T, Laird, PW, Shen, H, Zhou, W, Bellair, M, Chang, K, Covington, K, Creighton, CJ, Dinh, H, Doddapaneni, H, Donehower, LA, Drummond, J, Gibbs, RA, Glenn, R, Hale, W, Han, Y, Hu, J, Korchina, V, Lee, S, Lewis, L, Li, W, Liu, X, Morgan, M, Morton, D, Muzny, D, Santibanez, J, Sheth, M, Shinbrot, E, Wang, L, Wang, M, Wheeler, DA, Xi, L, Zhao, F, Hess, J, Appelbaum, EL, Bailey, M, Cordes, MG, Fronick, CC, Fulton, LA, Fulton, RS, Kandoth, C, Mardis, ER, Miller, CA, Schmidt, HK, Wilson, RK, Crain, D, Curley, E, Gardner, J, Lau, K, Mallery, D, Morris, S, Paulauskis, J, Penny, R, Shelton, C, Shelton, T, Sherman, M, Thompson, E, Yena, P, Bowen, J, Gastier-Foster, JM, Gerken, M, Leraas, KM, Lichtenberg, TM, Ramirez, NC, Wise, L, Zmuda, E, Corcoran, N, Costello, T, Hovens, C, Carvalho, AL, de Carvalho, AC, Fregnani, JH, Longatto-Filho, A, Reis, RM, Scapulatempo-Neto, C, Silveira, HCS, Vidal, DO, Burnette, A, Eschbacher, J, Hermes, B, Noss, A, Singh, R, Anderson, ML, Castro, PD, Ittmann, M, Huntsman, D, Kohl, B, Le, X, Thorp, R, Andry, C, Duffy, ER, Lyadov, V, Paklina, O, Setdikova, G, Shabunin, A, Tavobilov, M, McPherson, C, Warnick, R, Berkowitz, R, Cramer, D, Feltmate, C, Horowitz, N, Kibel, A, Muto, M, Raut, CP, Malykh, A, Barnholtz-Sloan, JS, Barrett, W, Devine, K, Fulop, J, Ostrom, QT, Shimmel, K, Wolinsky, Y, Sloan, AE, De Rose, A, Giuliante, F, Goodman, M, Karlan, BY, Hagedorn, CH, Eckman, J, Harr, J, Myers, J, Tucker, K, Zach, LA, Deyarmin, B, Hu, H, Kvecher, L, Larson, C, Mural, RJ, Somiari, S, Vicha, A, Zelinka, T, Bennett, J, Iacocca, M, Rabeno, B, Swanson, P, Latour, M, Lacombe, L, Têtu, B, Bergeron, A, McGraw, M, Staugaitis, SM, Chabot, J, Hibshoosh, H, Sepulveda, A, Su, T, Wang, T, Potapova, O, Voronina, O, Desjardins, L, Mariani, O, Roman-Roman, S, Sastre, X, Stern, M-H, Cheng, F, Signoretti, S, Berchuck, A, Bigner, D, Lipp, E, Marks, J, McCall, S, McLendon, R, Secord, A, Sharp, A, Behera, M, Brat, DJ, Chen, A, Delman, K, Force, S, Khuri, F, Magliocca, K, Maithel, S, Olson, JJ, Owonikoko, T, Pickens, A, Ramalingam, S, Shin, DM, Sica, G, Van Meir, EG, Zhang, H, Eijckenboom, W, Gillis, A, Korpershoek, E, Looijenga, L, Oosterhuis, W, Stoop, H, van Kessel, KE, Zwarthoff, EC, Calatozzolo, C, Cuppini, L, Cuzzubbo, S, DiMeco, F, Finocchiaro, G, Mattei, L, Perin, A, Pollo, B, Chen, C, Houck, J, Lohavanichbutr, P, Hartmann, A, Stoehr, C, Stoehr, R, Taubert, H, Wach, S, Wullich, B, Kycler, W, Murawa, D, Wiznerowicz, M, Chung, K, Edenfield, WJ, Martin, J, Baudin, E, Bubley, G, Bueno, R, De Rienzo, A, Richards, WG, Kalkanis, S, Mikkelsen, T, Noushmehr, H, Scarpace, L, Girard, N, Aymerich, M, Campo, E, Giné, E, Guillermo, AL, Van Bang, N, Hanh, PT, Phu, BD, Tang, Y, Colman, H, Evason, K, Dottino, PR, Martignetti, JA, Gabra, H, Juhl, H, Akeredolu, T, Stepa, S, Hoon, D, Ahn, K, Kang, KJ, Beuschlein, F, Breggia, A, Birrer, M, Bell, D, Borad, M, Bryce, AH, Castle, E, Chandan, V, Cheville, J, Copland, JA, Farnell, M, Flotte, T, Giama, N, Ho, T, Kendrick, M, Kocher, J-P, Kopp, K, Moser, C, Nagorney, D, O’Brien, D, O’Neill, BP, Patel, T, Petersen, G, Que, F, Rivera, M, Roberts, L, Smallridge, R, Smyrk, T, Stanton, M, Thompson, RH, Torbenson, M, Yang, JD, Zhang, L, Brimo, F, Ajani, JA, Gonzalez, AMA, Behrens, C, Bondaruk, J, Broaddus, R, Czerniak, B, Esmaeli, B, Fujimoto, J, Gershenwald, J, Guo, C, Logothetis, C, Moran, C, Ramondetta, L, Rice, D, Sood, A, Tamboli, P, Thompson, T, and Troncoso, P et al.. "Pathogenic Germline Variants in 10,389 Adult Cancers." Cell 173, no. 2 (April 2018): 355-370.e14. Full Text
- Jayasinghe, RG, Cao, S, Gao, Q, Wendl, MC, Vo, NS, Reynolds, SM, Zhao, Y, Climente-González, H, Chai, S, Wang, F, Varghese, R, Huang, M, Liang, W-W, Wyczalkowski, MA, Sengupta, S, Li, Z, Payne, SH, Fenyö, D, Miner, JH, Walter, MJ, Vincent, B, Eyras, E, Chen, K, Shmulevich, I, Chen, F, Ding, L, Caesar-Johnson, SJ, Demchok, JA, Felau, I, Kasapi, M, Ferguson, ML, Hutter, CM, Sofia, HJ, Tarnuzzer, R, Wang, Z, Yang, L, Zenklusen, JC, Zhang, JJ, Chudamani, S, Liu, J, Lolla, L, Naresh, R, Pihl, T, Sun, Q, Wan, Y, Wu, Y, Cho, J, DeFreitas, T, Frazer, S, Gehlenborg, N, Getz, G, Heiman, DI, Kim, J, Lawrence, MS, Lin, P, Meier, S, Noble, MS, Saksena, G, Voet, D, Zhang, H, Bernard, B, Chambwe, N, Dhankani, V, Knijnenburg, T, Kramer, R, Leinonen, K, Liu, Y, Miller, M, Reynolds, S, Thorsson, V, Zhang, W, Akbani, R, Broom, BM, Hegde, AM, Ju, Z, Kanchi, RS, Korkut, A, Li, J, Liang, H, Ling, S, Liu, W, Lu, Y, Mills, GB, Ng, K-S, Rao, A, Ryan, M, Wang, J, Weinstein, JN, Zhang, J, Abeshouse, A, Armenia, J, Chakravarty, D, Chatila, WK, de Bruijn, I, Gao, J, Gross, BE, Heins, ZJ, Kundra, R, La, K, Ladanyi, M, Luna, A, Nissan, MG, Ochoa, A, Phillips, SM, Reznik, E, Sanchez-Vega, F, Sander, C, Schultz, N, Sheridan, R, Sumer, SO, Sun, Y, Taylor, BS, Wang, J, Zhang, H, Anur, P, Peto, M, Spellman, P, Benz, C, Stuart, JM, Wong, CK, Yau, C, Hayes, DN, Parker, JS, Wilkerson, MD, Ally, A, Balasundaram, M, Bowlby, R, Brooks, D, Carlsen, R, Chuah, E, Dhalla, N, Holt, R, Jones, SJM, Kasaian, K, Lee, D, Ma, Y, Marra, MA, Mayo, M, Moore, RA, Mungall, AJ, Mungall, K, Robertson, AG, Sadeghi, S, Schein, JE, Sipahimalani, P, Tam, A, Thiessen, N, Tse, K, Wong, T, Berger, AC, Beroukhim, R, Cherniack, AD, Cibulskis, C, Gabriel, SB, Gao, GF, Ha, G, Meyerson, M, Schumacher, SE, Shih, J, Kucherlapati, MH, Kucherlapati, RS, Baylin, S, Cope, L, Danilova, L, Bootwalla, MS, Lai, PH, Maglinte, DT, Van Den Berg, DJ, Weisenberger, DJ, Auman, JT, Balu, S, Bodenheimer, T, Fan, C, Hoadley, KA, Hoyle, AP, Jefferys, SR, Jones, CD, Meng, S, Mieczkowski, PA, Mose, LE, Perou, AH, Perou, CM, Roach, J, Shi, Y, Simons, JV, Skelly, T, Soloway, MG, Tan, D, Veluvolu, U, Fan, H, Hinoue, T, Laird, PW, Shen, H, Zhou, W, Bellair, M, Chang, K, Covington, K, Creighton, CJ, Dinh, H, Doddapaneni, H, Donehower, LA, Drummond, J, Gibbs, RA, Glenn, R, Hale, W, Han, Y, Hu, J, Korchina, V, Lee, S, Lewis, L, Li, W, Liu, X, Morgan, M, Morton, D, Muzny, D, Santibanez, J, Sheth, M, Shinbrot, E, Wang, L, Wang, M, Wheeler, DA, Xi, L, Zhao, F, Hess, J, Appelbaum, EL, Bailey, M, Cordes, MG, Fronick, CC, Fulton, LA, Fulton, RS, Kandoth, C, Mardis, ER, McLellan, MD, Miller, CA, Schmidt, HK, Wilson, RK, Crain, D, Curley, E, Gardner, J, Lau, K, Mallery, D, Morris, S, Paulauskis, J, Penny, R, Shelton, C, Shelton, T, Sherman, M, Thompson, E, Yena, P, Bowen, J, Gastier-Foster, JM, Gerken, M, Leraas, KM, Lichtenberg, TM, Ramirez, NC, Wise, L, Zmuda, E, Corcoran, N, Costello, T, Hovens, C, Carvalho, AL, de Carvalho, AC, Fregnani, JH, Longatto-Filho, A, Reis, RM, Scapulatempo-Neto, C, Silveira, HCS, Vidal, DO, Burnette, A, Eschbacher, J, Hermes, B, Noss, A, Singh, R, Anderson, ML, Castro, PD, Ittmann, M, Huntsman, D, Kohl, B, Le, X, Thorp, R, Andry, C, Duffy, ER, Lyadov, V, Paklina, O, Setdikova, G, Shabunin, A, Tavobilov, M, McPherson, C, Warnick, R, Berkowitz, R, Cramer, D, Feltmate, C, Horowitz, N, Kibel, A, Muto, M, Raut, CP, Malykh, A, Barnholtz-Sloan, JS, Barrett, W, Devine, K, Fulop, J, Ostrom, QT, Shimmel, K, Wolinsky, Y, Sloan, AE, De Rose, A, Giuliante, F, Goodman, M, Karlan, BY, Hagedorn, CH, Eckman, J, Harr, J, Myers, J, Tucker, K, Zach, LA, Deyarmin, B, Hu, H, Kvecher, L, Larson, C, Mural, RJ, Somiari, S, Vicha, A, Zelinka, T, Bennett, J, Iacocca, M, Rabeno, B, Swanson, P, Latour, M, Lacombe, L, Têtu, B, Bergeron, A, McGraw, M, Staugaitis, SM, Chabot, J, Hibshoosh, H, Sepulveda, A, Su, T, Wang, T, Potapova, O, Voronina, O, Desjardins, L, Mariani, O, Roman-Roman, S, Sastre, X, Stern, M-H, Cheng, F, Signoretti, S, Berchuck, A, Bigner, D, Lipp, E, Marks, J, McCall, S, McLendon, R, Secord, A, Sharp, A, Behera, M, Brat, DJ, Chen, A, Delman, K, Force, S, Khuri, F, Magliocca, K, Maithel, S, Olson, JJ, Owonikoko, T, Pickens, A, Ramalingam, S, Shin, DM, Sica, G, Van Meir, EG, Zhang, H, Eijckenboom, W, Gillis, A, Korpershoek, E, Looijenga, L, Oosterhuis, W, Stoop, H, van Kessel, KE, Zwarthoff, EC, Calatozzolo, C, Cuppini, L, Cuzzubbo, S, DiMeco, F, Finocchiaro, G, Mattei, L, Perin, A, Pollo, B, Chen, C, Houck, J, Lohavanichbutr, P, Hartmann, A, Stoehr, C, Stoehr, R, Taubert, H, Wach, S, Wullich, B, Kycler, W, Murawa, D, Wiznerowicz, M, Chung, K, Edenfield, WJ, Martin, J, Baudin, E, Bubley, G, Bueno, R, De Rienzo, A, Richards, WG, Kalkanis, S, Mikkelsen, T, Noushmehr, H, Scarpace, L, Girard, N, Aymerich, M, Campo, E, Giné, E, Guillermo, AL, Van Bang, N, Hanh, PT, Phu, BD, Tang, Y, Colman, H, Evason, K, Dottino, PR, Martignetti, JA, Gabra, H, Juhl, H, Akeredolu, T, Stepa, S, Hoon, D, Ahn, K, Kang, KJ, Beuschlein, F, Breggia, A, Birrer, M, Bell, D, Borad, M, Bryce, AH, Castle, E, Chandan, V, Cheville, J, Copland, JA, Farnell, M, Flotte, T, Giama, N, Ho, T, Kendrick, M, Kocher, J-P, Kopp, K, Moser, C, Nagorney, D, O’Brien, D, O’Neill, BP, Patel, T, Petersen, G, Que, F, Rivera, M, Roberts, L, Smallridge, R, Smyrk, T, Stanton, M, Thompson, RH, Torbenson, M, Yang, JD, Zhang, L, Brimo, F, Ajani, JA, Gonzalez, AMA, Behrens, C, Bondaruk, J, Broaddus, R, Czerniak, B, Esmaeli, B, Fujimoto, J, Gershenwald, J, Guo, C, Lazar, AJ, Logothetis, C, Meric-Bernstam, F, Moran, C, Ramondetta, L, Rice, D, Sood, A, Tamboli, P, Thompson, T, Troncoso, P, Tsao, A, Wistuba, I, Carter, C, Haydu, L, Hersey, P, Jakrot, V, Kakavand, H, Kefford, R, Lee, K, Long, G, Mann, G, Quinn, M, Saw, R, Scolyer, R, and Shannon, K et al.. "Systematic Analysis of Splice-Site-Creating Mutations in Cancer." Cell Reports 23, no. 1 (April 2018): 270-281.e3. Full Text
- Knijnenburg, TA, Wang, L, Zimmermann, MT, Chambwe, N, Gao, GF, Cherniack, AD, Fan, H, Shen, H, Way, GP, Greene, CS, Liu, Y, Akbani, R, Feng, B, Donehower, LA, Miller, C, Shen, Y, Karimi, M, Chen, H, Kim, P, Jia, P, Shinbrot, E, Zhang, S, Liu, J, Hu, H, Bailey, MH, Yau, C, Wolf, D, Zhao, Z, Weinstein, JN, Li, L, Ding, L, Mills, GB, Laird, PW, Wheeler, DA, Shmulevich, I, Monnat, RJ, Xiao, Y, Wang, C, Caesar-Johnson, SJ, Demchok, JA, Felau, I, Kasapi, M, Ferguson, ML, Hutter, CM, Sofia, HJ, Tarnuzzer, R, Wang, Z, Yang, L, Zenklusen, JC, Zhang, JJ, Chudamani, S, Liu, J, Lolla, L, Naresh, R, Pihl, T, Sun, Q, Wan, Y, Wu, Y, Cho, J, DeFreitas, T, Frazer, S, Gehlenborg, N, Getz, G, Heiman, DI, Kim, J, Lawrence, MS, Lin, P, Meier, S, Noble, MS, Saksena, G, Voet, D, Zhang, H, Bernard, B, Dhankani, V, Knijnenburg, T, Kramer, R, Leinonen, K, Miller, M, Reynolds, S, Thorsson, V, Zhang, W, Broom, BM, Hegde, AM, Ju, Z, Kanchi, RS, Korkut, A, Li, J, Liang, H, Ling, S, Liu, W, Lu, Y, Ng, K-S, Rao, A, Ryan, M, Wang, J, Zhang, J, Abeshouse, A, Armenia, J, Chakravarty, D, Chatila, WK, de Bruijn, I, Gao, J, Gross, BE, Heins, ZJ, Kundra, R, La, K, Ladanyi, M, Luna, A, Nissan, MG, Ochoa, A, Phillips, SM, Reznik, E, Sanchez-Vega, F, Sander, C, Schultz, N, Sheridan, R, Sumer, SO, Sun, Y, Taylor, BS, Wang, J, Zhang, H, Anur, P, Peto, M, Spellman, P, Benz, C, Stuart, JM, Wong, CK, Hayes, DN, Parker, JS, Wilkerson, MD, Ally, A, Balasundaram, M, Bowlby, R, Brooks, D, Carlsen, R, Chuah, E, Dhalla, N, Holt, R, Jones, SJM, Kasaian, K, Lee, D, Ma, Y, Marra, MA, Mayo, M, Moore, RA, Mungall, AJ, Mungall, K, Robertson, AG, Sadeghi, S, Schein, JE, Sipahimalani, P, Tam, A, Thiessen, N, Tse, K, Wong, T, Berger, AC, Beroukhim, R, Cibulskis, C, Gabriel, SB, Ha, G, Meyerson, M, Schumacher, SE, Shih, J, Kucherlapati, MH, Kucherlapati, RS, Baylin, S, Cope, L, Danilova, L, Bootwalla, MS, Lai, PH, Maglinte, DT, Van Den Berg, DJ, Weisenberger, DJ, Auman, JT, Balu, S, Bodenheimer, T, Fan, C, Hoadley, KA, Hoyle, AP, Jefferys, SR, Jones, CD, Meng, S, Mieczkowski, PA, Mose, LE, Perou, AH, Perou, CM, Roach, J, Shi, Y, Simons, JV, Skelly, T, Soloway, MG, Tan, D, Veluvolu, U, Hinoue, T, Zhou, W, Bellair, M, Chang, K, Covington, K, Creighton, CJ, Dinh, H, Doddapaneni, H, Drummond, J, Gibbs, RA, Glenn, R, Hale, W, Han, Y, Hu, J, Korchina, V, Lee, S, Lewis, L, Li, W, Liu, X, Morgan, M, Morton, D, Muzny, D, Santibanez, J, Sheth, M, Wang, M, Xi, L, Zhao, F, Hess, J, Appelbaum, EL, Bailey, M, Cordes, MG, Fronick, CC, Fulton, LA, Fulton, RS, Kandoth, C, Mardis, ER, McLellan, MD, Miller, CA, Schmidt, HK, Wilson, RK, Crain, D, Curley, E, Gardner, J, Lau, K, Mallery, D, Morris, S, Paulauskis, J, Penny, R, Shelton, C, Shelton, T, Sherman, M, Thompson, E, Yena, P, Bowen, J, Gastier-Foster, JM, Gerken, M, Leraas, KM, Lichtenberg, TM, Ramirez, NC, Wise, L, Zmuda, E, Corcoran, N, Costello, T, Hovens, C, Carvalho, AL, de Carvalho, AC, Fregnani, JH, Longatto-Filho, A, Reis, RM, Scapulatempo-Neto, C, Silveira, HCS, Vidal, DO, Burnette, A, Eschbacher, J, Hermes, B, Noss, A, Singh, R, Anderson, ML, Castro, PD, Ittmann, M, Huntsman, D, Kohl, B, Le, X, Thorp, R, Andry, C, Duffy, ER, Lyadov, V, Paklina, O, Setdikova, G, Shabunin, A, Tavobilov, M, McPherson, C, Warnick, R, Berkowitz, R, Cramer, D, Feltmate, C, Horowitz, N, Kibel, A, Muto, M, Raut, CP, Malykh, A, Barnholtz-Sloan, JS, Barrett, W, Devine, K, Fulop, J, Ostrom, QT, Shimmel, K, Wolinsky, Y, Sloan, AE, De Rose, A, Giuliante, F, Goodman, M, Karlan, BY, Hagedorn, CH, Eckman, J, Harr, J, Myers, J, Tucker, K, Zach, LA, Deyarmin, B, Kvecher, L, Larson, C, Mural, RJ, Somiari, S, Vicha, A, Zelinka, T, Bennett, J, Iacocca, M, Rabeno, B, Swanson, P, Latour, M, Lacombe, L, Têtu, B, Bergeron, A, McGraw, M, Staugaitis, SM, Chabot, J, Hibshoosh, H, Sepulveda, A, Su, T, Wang, T, Potapova, O, Voronina, O, Desjardins, L, Mariani, O, Roman-Roman, S, Sastre, X, Stern, M-H, Cheng, F, Signoretti, S, Berchuck, A, Bigner, D, Lipp, E, Marks, J, McCall, S, McLendon, R, Secord, A, Sharp, A, Behera, M, Brat, DJ, Chen, A, Delman, K, Force, S, Khuri, F, Magliocca, K, Maithel, S, Olson, JJ, Owonikoko, T, Pickens, A, Ramalingam, S, Shin, DM, Sica, G, Van Meir, EG, Zhang, H, Eijckenboom, W, Gillis, A, Korpershoek, E, Looijenga, L, Oosterhuis, W, Stoop, H, van Kessel, KE, Zwarthoff, EC, Calatozzolo, C, Cuppini, L, Cuzzubbo, S, DiMeco, F, Finocchiaro, G, Mattei, L, Perin, A, Pollo, B, Chen, C, Houck, J, Lohavanichbutr, P, Hartmann, A, Stoehr, C, Stoehr, R, Taubert, H, Wach, S, Wullich, B, Kycler, W, Murawa, D, Wiznerowicz, M, Chung, K, Edenfield, WJ, Martin, J, Baudin, E, Bubley, G, Bueno, R, De Rienzo, A, Richards, WG, Kalkanis, S, Mikkelsen, T, Noushmehr, H, Scarpace, L, Girard, N, Aymerich, M, Campo, E, Giné, E, Guillermo, AL, Van Bang, N, Hanh, PT, Phu, BD, Tang, Y, Colman, H, Evason, K, Dottino, PR, Martignetti, JA, Gabra, H, Juhl, H, Akeredolu, T, Stepa, S, Hoon, D, Ahn, K, Kang, KJ, Beuschlein, F, Breggia, A, Birrer, M, Bell, D, Borad, M, Bryce, AH, Castle, E, Chandan, V, Cheville, J, Copland, JA, Farnell, M, Flotte, T, Giama, N, Ho, T, Kendrick, M, Kocher, J-P, Kopp, K, Moser, C, Nagorney, D, O’Brien, D, O’Neill, BP, Patel, T, Petersen, G, Que, F, Rivera, M, Roberts, L, Smallridge, R, Smyrk, T, Stanton, M, Thompson, RH, Torbenson, M, Yang, JD, Zhang, L, Brimo, F, Ajani, JA, Gonzalez, AMA, Behrens, C, Bondaruk, J, Broaddus, R, Czerniak, B, Esmaeli, B, Fujimoto, J, Gershenwald, J, Guo, C, Lazar, AJ, Logothetis, C, Meric-Bernstam, F, Moran, C, Ramondetta, L, Rice, D, Sood, A, Tamboli, P, Thompson, T, Troncoso, P, Tsao, A, Wistuba, I, Carter, C, Haydu, L, Hersey, P, Jakrot, V, Kakavand, H, Kefford, R, Lee, K, Long, G, Mann, G, Quinn, M, Saw, R, Scolyer, R, Shannon, K, Spillane, A, Stretch, J, Synott, M, and Thompson, J et al.. "Genomic and Molecular Landscape of DNA Damage Repair Deficiency across The Cancer Genome Atlas." Cell Reports 23, no. 1 (April 2018): 239-254.e6. Full Text
- Liu, J, Lichtenberg, T, Hoadley, KA, Poisson, LM, Lazar, AJ, Cherniack, AD, Kovatich, AJ, Benz, CC, Levine, DA, Lee, AV, Omberg, L, Wolf, DM, Shriver, CD, Thorsson, V, Hu, H, Caesar-Johnson, SJ, Demchok, JA, Felau, I, Kasapi, M, Ferguson, ML, Hutter, CM, Sofia, HJ, Tarnuzzer, R, Wang, Z, Yang, L, Zenklusen, JC, Zhang, JJ, Chudamani, S, Liu, J, Lolla, L, Naresh, R, Pihl, T, Sun, Q, Wan, Y, Wu, Y, Cho, J, DeFreitas, T, Frazer, S, Gehlenborg, N, Getz, G, Heiman, DI, Kim, J, Lawrence, MS, Lin, P, Meier, S, Noble, MS, Saksena, G, Voet, D, Zhang, H, Bernard, B, Chambwe, N, Dhankani, V, Knijnenburg, T, Kramer, R, Leinonen, K, Liu, Y, Miller, M, Reynolds, S, Shmulevich, I, Zhang, W, Akbani, R, Broom, BM, Hegde, AM, Ju, Z, Kanchi, RS, Korkut, A, Li, J, Liang, H, Ling, S, Liu, W, Lu, Y, Mills, GB, Ng, K-S, Rao, A, Ryan, M, Wang, J, Weinstein, JN, Zhang, J, Abeshouse, A, Armenia, J, Chakravarty, D, Chatila, WK, de Bruijn, I, Gao, J, Gross, BE, Heins, ZJ, Kundra, R, La, K, Ladanyi, M, Luna, A, Nissan, MG, Ochoa, A, Phillips, SM, Reznik, E, Sanchez-Vega, F, Sander, C, Schultz, N, Sheridan, R, Sumer, SO, Sun, Y, Taylor, BS, Wang, J, Zhang, H, Anur, P, Peto, M, Spellman, P, Benz, C, Stuart, JM, Wong, CK, Yau, C, Hayes, DN, Parker, JS, Wilkerson, MD, Ally, A, Balasundaram, M, Bowlby, R, Brooks, D, Carlsen, R, Chuah, E, Dhalla, N, Holt, R, Jones, SJM, Kasaian, K, Lee, D, Ma, Y, Marra, MA, Mayo, M, Moore, RA, Mungall, AJ, Mungall, K, Robertson, AG, Sadeghi, S, Schein, JE, Sipahimalani, P, Tam, A, Thiessen, N, Tse, K, Wong, T, Berger, AC, Beroukhim, R, Cibulskis, C, Gabriel, SB, Gao, GF, Ha, G, Meyerson, M, Schumacher, SE, Shih, J, Kucherlapati, MH, Kucherlapati, RS, Baylin, S, Cope, L, Danilova, L, Bootwalla, MS, Lai, PH, Maglinte, DT, Van Den Berg, DJ, Weisenberger, DJ, Auman, JT, Balu, S, Bodenheimer, T, Fan, C, Hoyle, AP, Jefferys, SR, Jones, CD, Meng, S, Mieczkowski, PA, Mose, LE, Perou, AH, Perou, CM, Roach, J, Shi, Y, Simons, JV, Skelly, T, Soloway, MG, Tan, D, Veluvolu, U, Fan, H, Hinoue, T, Laird, PW, Shen, H, Zhou, W, Bellair, M, Chang, K, Covington, K, Creighton, CJ, Dinh, H, Doddapaneni, H, Donehower, LA, Drummond, J, Gibbs, RA, Glenn, R, Hale, W, Han, Y, Hu, J, Korchina, V, Lee, S, Lewis, L, Li, W, Liu, X, Morgan, M, Morton, D, Muzny, D, Santibanez, J, Sheth, M, Shinbro, E, Wang, L, Wang, M, Wheeler, DA, Xi, L, Zhao, F, Hess, J, Appelbaum, EL, Bailey, M, Cordes, MG, Ding, L, Fronick, CC, Fulton, LA, Fulton, RS, Kandoth, C, Mardis, ER, McLellan, MD, Miller, CA, Schmidt, HK, Wilson, RK, Crain, D, Curley, E, Gardner, J, Lau, K, Mallery, D, Morris, S, Paulauskis, J, Penny, R, Shelton, C, Shelton, T, Sherman, M, Thompson, E, Yena, P, Bowen, J, Gastier-Foster, JM, Gerken, M, Leraas, KM, Lichtenberg, TM, Ramirez, NC, Wise, L, Zmuda, E, Corcoran, N, Costello, T, Hovens, C, Carvalho, AL, de Carvalho, AC, Fregnani, JH, Longatto-Filho, A, Reis, RM, Scapulatempo-Neto, C, Silveira, HCS, Vidal, DO, Burnette, A, Eschbacher, J, Hermes, B, Noss, A, Singh, R, Anderson, ML, Castro, PD, Ittmann, M, Huntsman, D, Kohl, B, Le, X, Thorp, R, Andry, C, Duffy, ER, Lyadov, V, Paklina, O, Setdikova, G, Shabunin, A, Tavobilov, M, McPherson, C, Warnick, R, Berkowitz, R, Cramer, D, Feltmate, C, Horowitz, N, Kibel, A, Muto, M, Raut, CP, Malykh, A, Barnholtz-Sloan, JS, Barrett, W, Devine, K, Fulop, J, Ostrom, QT, Shimmel, K, Wolinsky, Y, Sloan, AE, De Rose, A, Giuliante, F, Goodman, M, Karlan, BY, Hagedorn, CH, Eckman, J, Harr, J, Myers, J, Tucker, K, Zach, LA, Deyarmin, B, Kvecher, L, Larson, C, Mural, RJ, Somiari, S, Vicha, A, Zelinka, T, Bennett, J, Iacocca, M, Rabeno, B, Swanson, P, Latour, M, Lacombe, L, Têtu, B, Bergeron, A, McGraw, M, Staugaitis, SM, Chabot, J, Hibshoosh, H, Sepulveda, A, Su, T, Wang, T, Potapova, O, Voronina, O, Desjardins, L, Mariani, O, Roman-Roman, S, Sastre, X, Stern, M-H, Cheng, F, Signoretti, S, Berchuck, A, Bigner, D, Lipp, E, Marks, J, McCall, S, McLendon, R, Secord, A, Sharp, A, Behera, M, Brat, DJ, Chen, A, Delman, K, Force, S, Khuri, F, Magliocca, K, Maithel, S, Olson, JJ, Owonikoko, T, Pickens, A, Ramalingam, S, Shin, DM, Sica, G, Van Meir, EG, Zhang, H, Eijckenboom, W, Gillis, A, Korpershoek, E, Looijenga, L, Oosterhuis, W, Stoop, H, van Kessel, KE, Zwarthoff, EC, Calatozzolo, C, Cuppini, L, Cuzzubbo, S, DiMeco, F, Finocchiaro, G, Mattei, L, Perin, A, Pollo, B, Chen, C, Houck, J, Lohavanichbutr, P, Hartmann, A, Stoehr, C, Stoehr, R, Taubert, H, Wach, S, Wullich, B, Kycler, W, Murawa, D, Wiznerowicz, M, Chung, K, Edenfield, WJ, Martin, J, Baudin, E, Bubley, G, Bueno, R, De Rienzo, A, Richards, WG, Kalkanis, S, Mikkelsen, T, Noushmehr, H, Scarpace, L, Girard, N, Aymerich, M, Campo, E, Giné, E, Guillermo, AL, Van Bang, N, Hanh, PT, Phu, BD, Tang, Y, Colman, H, Evason, K, Dottino, PR, Martignetti, JA, Gabra, H, Juhl, H, Akeredolu, T, Stepa, S, Hoon, D, Ahn, K, Kang, KJ, Beuschlein, F, Breggia, A, Birrer, M, Bell, D, Borad, M, Bryce, AH, Castle, E, Chandan, V, Cheville, J, Copland, JA, Farnell, M, Flotte, T, Giama, N, Ho, T, Kendrick, M, Kocher, J-P, Kopp, K, Moser, C, Nagorney, D, O’Brien, D, O’Neill, BP, Patel, T, Petersen, G, Que, F, Rivera, M, Roberts, L, Smallridge, R, Smyrk, T, Stanton, M, Thompson, RH, Torbenson, M, Yang, JD, Zhang, L, Brimo, F, Ajani, JA, Angulo Gonzalez, AM, Behrens, C, Bondaruk, J, Broaddus, R, Czerniak, B, Esmaeli, B, Fujimoto, J, Gershenwald, J, Guo, C, Logothetis, C, Meric-Bernstam, F, Moran, C, Ramondetta, L, Rice, D, Sood, A, Tamboli, P, Thompson, T, Troncoso, P, Tsao, A, Wistuba, I, Carter, C, Haydu, L, Hersey, P, Jakrot, V, Kakavand, H, Kefford, R, Lee, K, Long, G, Mann, G, Quinn, M, Saw, R, Scolyer, R, Shannon, K, Spillane, A, Stretch, J, Synott, M, Thompson, J, Wilmott, J, Al-Ahmadie, H, Chan, TA, Ghossein, R, Gopalan, A, Reuter, V, Singer, S, Singh, B, Tien, NV, and Broudy, T et al.. "An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics." Cell 173, no. 2 (April 2018): 400-416.e11. Full Text
- Malta, TM, Sokolov, A, Gentles, AJ, Burzykowski, T, Poisson, L, Weinstein, JN, Kamińska, B, Huelsken, J, Omberg, L, Gevaert, O, Colaprico, A, Czerwińska, P, Mazurek, S, Mishra, L, Heyn, H, Krasnitz, A, Godwin, AK, Lazar, AJ, Stuart, JM, Hoadley, KA, Laird, PW, Noushmehr, H, Wiznerowicz, M, Caesar-Johnson, SJ, Demchok, JA, Felau, I, Kasapi, M, Ferguson, ML, Hutter, CM, Sofia, HJ, Tarnuzzer, R, Wang, Z, Yang, L, Zenklusen, JC, Zhang, JJ, Chudamani, S, Liu, J, Lolla, L, Naresh, R, Pihl, T, Sun, Q, Wan, Y, Wu, Y, Cho, J, DeFreitas, T, Frazer, S, Gehlenborg, N, Getz, G, Heiman, DI, Kim, J, Lawrence, MS, Lin, P, Meier, S, Noble, MS, Saksena, G, Voet, D, Zhang, H, Bernard, B, Chambwe, N, Dhankani, V, Knijnenburg, T, Kramer, R, Leinonen, K, Liu, Y, Miller, M, Reynolds, S, Shmulevich, I, Thorsson, V, Zhang, W, Akbani, R, Broom, BM, Hegde, AM, Ju, Z, Kanchi, RS, Korkut, A, Li, J, Liang, H, Ling, S, Liu, W, Lu, Y, Mills, GB, Ng, K-S, Rao, A, Ryan, M, Wang, J, Zhang, J, Abeshouse, A, Armenia, J, Chakravarty, D, Chatila, WK, de Bruijn, I, Gao, J, Gross, BE, Heins, ZJ, Kundra, R, La, K, Ladanyi, M, Luna, A, Nissan, MG, Ochoa, A, Phillips, SM, Reznik, E, Sanchez-Vega, F, Sander, C, Schultz, N, Sheridan, R, Sumer, SO, Sun, Y, Taylor, BS, Wang, J, Zhang, H, Anur, P, Peto, M, Spellman, P, Benz, C, Wong, CK, Yau, C, Hayes, DN, Parker, JS, Wilkerson, MD, Ally, A, Balasundaram, M, Bowlby, R, Brooks, D, Carlsen, R, Chuah, E, Dhalla, N, Holt, R, Jones, SJM, Kasaian, K, Lee, D, Ma, Y, Marra, MA, Mayo, M, Moore, RA, Mungall, AJ, Mungall, K, Robertson, AG, Sadeghi, S, Schein, JE, Sipahimalani, P, Tam, A, Thiessen, N, Tse, K, Wong, T, Berger, AC, Beroukhim, R, Cherniack, AD, Cibulskis, C, Gabriel, SB, Gao, GF, Ha, G, Meyerson, M, Schumacher, SE, Shih, J, Kucherlapati, MH, Kucherlapati, RS, Baylin, S, Cope, L, Danilova, L, Bootwalla, MS, Lai, PH, Maglinte, DT, Van Den Berg, DJ, Weisenberger, DJ, Auman, JT, Balu, S, Bodenheimer, T, Fan, C, Hoyle, AP, Jefferys, SR, Jones, CD, Meng, S, Mieczkowski, PA, Mose, LE, Perou, AH, Perou, CM, Roach, J, Shi, Y, Simons, JV, Skelly, T, Soloway, MG, Tan, D, Veluvolu, U, Fan, H, Hinoue, T, Shen, H, Zhou, W, Bellair, M, Chang, K, Covington, K, Creighton, CJ, Dinh, H, Doddapaneni, H, Donehower, LA, Drummond, J, Gibbs, RA, Glenn, R, Hale, W, Han, Y, Hu, J, Korchina, V, Lee, S, Lewis, L, Li, W, Liu, X, Morgan, M, Morton, D, Muzny, D, Santibanez, J, Sheth, M, Shinbrot, E, Wang, L, Wang, M, Wheeler, DA, Xi, L, Zhao, F, Hess, J, Appelbaum, EL, Bailey, M, Cordes, MG, Ding, L, Fronick, CC, Fulton, LA, Fulton, RS, Kandoth, C, Mardis, ER, McLellan, MD, Miller, CA, Schmidt, HK, Wilson, RK, Crain, D, Curley, E, Gardner, J, Lau, K, Mallery, D, Morris, S, Paulauskis, J, Penny, R, Shelton, C, Shelton, T, Sherman, M, Thompson, E, Yena, P, Bowen, J, Gastier-Foster, JM, Gerken, M, Leraas, KM, Lichtenberg, TM, Ramirez, NC, Wise, L, Zmuda, E, Corcoran, N, Costello, T, Hovens, C, Carvalho, AL, de Carvalho, AC, Fregnani, JH, Longatto-Filho, A, Reis, RM, Scapulatempo-Neto, C, Silveira, HCS, Vidal, DO, Burnette, A, Eschbacher, J, Hermes, B, Noss, A, Singh, R, Anderson, ML, Castro, PD, Ittmann, M, Huntsman, D, Kohl, B, Le, X, Thorp, R, Andry, C, Duffy, ER, Lyadov, V, Paklina, O, Setdikova, G, Shabunin, A, Tavobilov, M, McPherson, C, Warnick, R, Berkowitz, R, Cramer, D, Feltmate, C, Horowitz, N, Kibel, A, Muto, M, Raut, CP, Malykh, A, Barnholtz-Sloan, JS, Barrett, W, Devine, K, Fulop, J, Ostrom, QT, Shimmel, K, Wolinsky, Y, Sloan, AE, De Rose, A, Giuliante, F, Goodman, M, Karlan, BY, Hagedorn, CH, Eckman, J, Harr, J, Myers, J, Tucker, K, Zach, LA, Deyarmin, B, Hu, H, Kvecher, L, Larson, C, Mural, RJ, Somiari, S, Vicha, A, Zelinka, T, Bennett, J, Iacocca, M, Rabeno, B, Swanson, P, Latour, M, Lacombe, L, Têtu, B, Bergeron, A, McGraw, M, Staugaitis, SM, Chabot, J, Hibshoosh, H, Sepulveda, A, Su, T, Wang, T, Potapova, O, Voronina, O, Desjardins, L, Mariani, O, Roman-Roman, S, Sastre, X, Stern, M-H, Cheng, F, Signoretti, S, Berchuck, A, Bigner, D, Lipp, E, Marks, J, McCall, S, McLendon, R, Secord, A, Sharp, A, Behera, M, Brat, DJ, Chen, A, Delman, K, Force, S, Khuri, F, Magliocca, K, Maithel, S, Olson, JJ, Owonikoko, T, Pickens, A, Ramalingam, S, Shin, DM, Sica, G, Van Meir, EG, Zhang, H, Eijckenboom, W, Gillis, A, Korpershoek, E, Looijenga, L, Oosterhuis, W, Stoop, H, van Kessel, KE, Zwarthoff, EC, Calatozzolo, C, Cuppini, L, Cuzzubbo, S, DiMeco, F, Finocchiaro, G, Mattei, L, Perin, A, Pollo, B, Chen, C, Houck, J, Lohavanichbutr, P, Hartmann, A, Stoehr, C, Stoehr, R, Taubert, H, Wach, S, Wullich, B, Kycler, W, Murawa, D, Chung, K, Edenfield, WJ, Martin, J, Baudin, E, Bubley, G, Bueno, R, De Rienzo, A, Richards, WG, Kalkanis, S, Mikkelsen, T, Scarpace, L, Girard, N, Aymerich, M, Campo, E, Giné, E, Guillermo, AL, Van Bang, N, Hanh, PT, Phu, BD, Tang, Y, Colman, H, Evason, K, Dottino, PR, Martignetti, JA, Gabra, H, Juhl, H, Akeredolu, T, Stepa, S, Hoon, D, Ahn, K, Kang, KJ, Beuschlein, F, Breggia, A, Birrer, M, Bell, D, Borad, M, Bryce, AH, Castle, E, Chandan, V, Cheville, J, Copland, JA, Farnell, M, Flotte, T, Giama, N, Ho, T, Kendrick, M, Kocher, J-P, Kopp, K, Moser, C, Nagorney, D, O’Brien, D, O’Neill, BP, Patel, T, Petersen, G, Que, F, Rivera, M, Roberts, L, Smallridge, R, Smyrk, T, Stanton, M, Thompson, RH, Torbenson, M, Yang, JD, Zhang, L, Brimo, F, Ajani, JA, Gonzalez, AMA, Behrens, C, Bondaruk, J, Broaddus, R, Czerniak, B, Esmaeli, B, Fujimoto, J, Gershenwald, J, Guo, C, Logothetis, C, Meric-Bernstam, F, Moran, C, Ramondetta, L, Rice, D, Sood, A, Tamboli, P, Thompson, T, Troncoso, P, Tsao, A, Wistuba, I, Carter, C, Haydu, L, Hersey, P, Jakrot, V, Kakavand, H, Kefford, R, Lee, K, Long, G, Mann, G, Quinn, M, Saw, R, Scolyer, R, Shannon, K, Spillane, A, Stretch, J, Synott, M, Thompson, J, Wilmott, J, Al-Ahmadie, H, Chan, TA, and Ghossein, R et al.. "Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation." Cell 173, no. 2 (April 2018): 338-354.e15. Full Text
- Peng, X, Chen, Z, Farshidfar, F, Xu, X, Lorenzi, PL, Wang, Y, Cheng, F, Tan, L, Mojumdar, K, Du, D, Ge, Z, Li, J, Thomas, GV, Birsoy, K, Liu, L, Zhang, H, Zhao, Z, Marchand, C, Weinstein, JN, Bathe, OF, Liang, H, Caesar-Johnson, SJ, Demchok, JA, Felau, I, Kasapi, M, Ferguson, ML, Hutter, CM, Sofia, HJ, Tarnuzzer, R, Wang, Z, Yang, L, Zenklusen, JC, Zhang, JJ, Chudamani, S, Liu, J, Lolla, L, Naresh, R, Pihl, T, Sun, Q, Wan, Y, Wu, Y, Cho, J, DeFreitas, T, Frazer, S, Gehlenborg, N, Getz, G, Heiman, DI, Kim, J, Lawrence, MS, Lin, P, Meier, S, Noble, MS, Saksena, G, Voet, D, Zhang, H, Bernard, B, Chambwe, N, Dhankani, V, Knijnenburg, T, Kramer, R, Leinonen, K, Liu, Y, Miller, M, Reynolds, S, Shmulevich, I, Thorsson, V, Zhang, W, Akbani, R, Broom, BM, Hegde, AM, Ju, Z, Kanchi, RS, Korkut, A, Ling, S, Liu, W, Lu, Y, Mills, GB, Ng, K-S, Rao, A, Ryan, M, Wang, J, Zhang, J, Abeshouse, A, Armenia, J, Chakravarty, D, Chatila, WK, de Bruijn, I, Gao, J, Gross, BE, Heins, ZJ, Kundra, R, La, K, Ladanyi, M, Luna, A, Nissan, MG, Ochoa, A, Phillips, SM, Reznik, E, Sanchez-Vega, F, Sander, C, Schultz, N, Sheridan, R, Sumer, SO, Sun, Y, Taylor, BS, Wang, J, Zhang, H, Anur, P, Peto, M, Spellman, P, Benz, C, Stuart, JM, Wong, CK, Yau, C, Hayes, DN, Parker, JS, Wilkerson, MD, Ally, A, Balasundaram, M, Bowlby, R, Brooks, D, Carlsen, R, Chuah, E, Dhalla, N, Holt, R, Jones, SJM, Kasaian, K, Lee, D, Ma, Y, Marra, MA, Mayo, M, Moore, RA, Mungall, AJ, Mungall, K, Robertson, AG, Sadeghi, S, Schein, JE, Sipahimalani, P, Tam, A, Thiessen, N, Tse, K, Wong, T, Berger, AC, Beroukhim, R, Cherniack, AD, Cibulskis, C, Gabriel, SB, Gao, GF, Ha, G, Meyerson, M, Schumacher, SE, Shih, J, Kucherlapati, MH, Kucherlapati, RS, Baylin, S, Cope, L, Danilova, L, Bootwalla, MS, Lai, PH, Maglinte, DT, Van Den Berg, DJ, Weisenberger, DJ, Auman, JT, Balu, S, Bodenheimer, T, Fan, C, Hoadley, KA, Hoyle, AP, Jefferys, SR, Jones, CD, Meng, S, Mieczkowski, PA, Mose, LE, Perou, AH, Perou, CM, Roach, J, Shi, Y, Simons, JV, Skelly, T, Soloway, MG, Tan, D, Veluvolu, U, Fan, H, Hinoue, T, Laird, PW, Shen, H, Zhou, W, Bellair, M, Chang, K, Covington, K, Creighton, CJ, Dinh, H, Doddapaneni, H, Donehower, LA, Drummond, J, Gibbs, RA, Glenn, R, Hale, W, Han, Y, Hu, J, Korchina, V, Lee, S, Lewis, L, Li, W, Liu, X, Morgan, M, Morton, D, Muzny, D, Santibanez, J, Sheth, M, Shinbrot, E, Wang, L, Wang, M, Wheeler, DA, Xi, L, Zhao, F, Hess, J, Appelbaum, EL, Bailey, M, Cordes, MG, Ding, L, Fronick, CC, Fulton, LA, Fulton, RS, Kandoth, C, Mardis, ER, McLellan, MD, Miller, CA, Schmidt, HK, Wilson, RK, Crain, D, Curley, E, Gardner, J, Lau, K, Mallery, D, Morris, S, Paulauskis, J, Penny, R, Shelton, C, Shelton, T, Sherman, M, Thompson, E, Yena, P, Bowen, J, Gastier-Foster, JM, Gerken, M, Leraas, KM, Lichtenberg, TM, Ramirez, NC, Wise, L, Zmuda, E, Corcoran, N, Costello, T, Hovens, C, Carvalho, AL, de Carvalho, AC, Fregnani, JH, Longatto-Filho, A, Reis, RM, Scapulatempo-Neto, C, Silveira, HCS, Vidal, DO, Burnette, A, Eschbacher, J, Hermes, B, Noss, A, Singh, R, Anderson, ML, Castro, PD, Ittmann, M, Huntsman, D, Kohl, B, Le, X, Thorp, R, Andry, C, Duffy, ER, Lyadov, V, Paklina, O, Setdikova, G, Shabunin, A, Tavobilov, M, McPherson, C, Warnick, R, Berkowitz, R, Cramer, D, Feltmate, C, Horowitz, N, Kibel, A, Muto, M, Raut, CP, Malykh, A, Barnholtz-Sloan, JS, Barrett, W, Devine, K, Fulop, J, Ostrom, QT, Shimmel, K, Wolinsky, Y, Sloan, AE, De Rose, A, Giuliante, F, Goodman, M, Karlan, BY, Hagedorn, CH, Eckman, J, Harr, J, Myers, J, Tucker, K, Zach, LA, Deyarmin, B, Hu, H, Kvecher, L, Larson, C, Mural, RJ, Somiari, S, Vicha, A, Zelinka, T, Bennett, J, Iacocca, M, Rabeno, B, Swanson, P, Latour, M, Lacombe, L, Têtu, B, Bergeron, A, McGraw, M, Staugaitis, SM, Chabot, J, Hibshoosh, H, Sepulveda, A, Su, T, Wang, T, Potapova, O, Voronina, O, Desjardins, L, Mariani, O, Roman-Roman, S, Sastre, X, Stern, M-H, Signoretti, S, Berchuck, A, Bigner, D, Lipp, E, Marks, J, McCall, S, McLendon, R, Secord, A, Sharp, A, Behera, M, Brat, DJ, Chen, A, Delman, K, Force, S, Khuri, F, Magliocca, K, Maithel, S, Olson, JJ, Owonikoko, T, Pickens, A, Ramalingam, S, Shin, DM, Sica, G, Van Meir, EG, Zhang, H, Eijckenboom, W, Gillis, A, Korpershoek, E, Looijenga, L, Oosterhuis, W, Stoop, H, van Kessel, KE, Zwarthoff, EC, Calatozzolo, C, Cuppini, L, Cuzzubbo, S, DiMeco, F, Finocchiaro, G, Mattei, L, Perin, A, Pollo, B, Chen, C, Houck, J, Lohavanichbutr, P, Hartmann, A, Stoehr, C, Stoehr, R, Taubert, H, Wach, S, Wullich, B, Kycler, W, Murawa, D, Wiznerowicz, M, Chung, K, Edenfield, WJ, Martin, J, Baudin, E, Bubley, G, Bueno, R, De Rienzo, A, Richards, WG, Kalkanis, S, Mikkelsen, T, Noushmehr, H, Scarpace, L, Girard, N, Aymerich, M, Campo, E, Giné, E, Guillermo, AL, Van Bang, N, Hanh, PT, Phu, BD, Tang, Y, Colman, H, Evason, K, Dottino, PR, Martignetti, JA, Gabra, H, Juhl, H, Akeredolu, T, Stepa, S, Hoon, D, Ahn, K, Kang, KJ, Beuschlein, F, Breggia, A, Birrer, M, Bell, D, Borad, M, Bryce, AH, Castle, E, Chandan, V, Cheville, J, Copland, JA, Farnell, M, Flotte, T, Giama, N, Ho, T, Kendrick, M, Kocher, J-P, Kopp, K, Moser, C, Nagorney, D, O’Brien, D, O’Neill, BP, Patel, T, Petersen, G, Que, F, Rivera, M, Roberts, L, Smallridge, R, Smyrk, T, Stanton, M, Thompson, RH, Torbenson, M, Yang, JD, Zhang, L, Brimo, F, Ajani, JA, Gonzalez, AMA, Behrens, C, Bondaruk, J, Broaddus, R, Czerniak, B, Esmaeli, B, Fujimoto, J, Gershenwald, J, Guo, C, Lazar, AJ, Logothetis, C, Meric-Bernstam, F, Moran, C, Ramondetta, L, Rice, D, Sood, A, Tamboli, P, Thompson, T, Troncoso, P, Tsao, A, Wistuba, I, Carter, C, Haydu, L, Hersey, P, Jakrot, V, Kakavand, H, Kefford, R, Lee, K, Long, G, Mann, G, Quinn, M, Saw, R, Scolyer, R, Shannon, K, Spillane, A, Stretch, J, Synott, M, Thompson, J, Wilmott, J, Al-Ahmadie, H, and Chan, TA et al.. "Molecular Characterization and Clinical Relevance of Metabolic Expression Subtypes in Human Cancers." Cell Reports 23, no. 1 (April 2018): 255-269.e4. Full Text
- Ricketts, CJ, De Cubas, AA, Fan, H, Smith, CC, Lang, M, Reznik, E, Bowlby, R, Gibb, EA, Akbani, R, Beroukhim, R, Bottaro, DP, Choueiri, TK, Gibbs, RA, Godwin, AK, Haake, S, Hakimi, AA, Henske, EP, Hsieh, JJ, Ho, TH, Kanchi, RS, Krishnan, B, Kwiatkowski, DJ, Lui, W, Merino, MJ, Mills, GB, Myers, J, Nickerson, ML, Reuter, VE, Schmidt, LS, Shelley, CS, Shen, H, Shuch, B, Signoretti, S, Srinivasan, R, Tamboli, P, Thomas, G, Vincent, BG, Vocke, CD, Wheeler, DA, Yang, L, Kim, WY, Robertson, AG, Spellman, PT, Rathmell, WK, Linehan, WM, Caesar-Johnson, SJ, Demchok, JA, Felau, I, Kasapi, M, Ferguson, ML, Hutter, CM, Sofia, HJ, Tarnuzzer, R, Wang, Z, Yang, L, Zenklusen, JC, Zhang, JJ, Chudamani, S, Liu, J, Lolla, L, Naresh, R, Pihl, T, Sun, Q, Wan, Y, Wu, Y, Cho, J, DeFreitas, T, Frazer, S, Gehlenborg, N, Getz, G, Heiman, DI, Kim, J, Lawrence, MS, Lin, P, Meier, S, Noble, MS, Saksena, G, Voet, D, Zhang, H, Bernard, B, Chambwe, N, Dhankani, V, Knijnenburg, T, Kramer, R, Leinonen, K, Liu, Y, Miller, M, Reynolds, S, Shmulevich, I, Thorsson, V, Zhang, W, Broom, BM, Hegde, AM, Ju, Z, Korkut, A, Li, J, Liang, H, Ling, S, Liu, W, Lu, Y, Ng, K-S, Rao, A, Ryan, M, Wang, J, Weinstein, JN, Zhang, J, Abeshouse, A, Armenia, J, Chakravarty, D, Chatila, WK, de Bruijn, I, Gao, J, Gross, BE, Heins, ZJ, Kundra, R, La, K, Ladanyi, M, Luna, A, Nissan, MG, Ochoa, A, Phillips, SM, Sanchez-Vega, F, Sander, C, Schultz, N, Sheridan, R, Sumer, SO, Sun, Y, Taylor, BS, Wang, J, Zhang, H, Anur, P, Peto, M, Spellman, P, Benz, C, Stuart, JM, Wong, CK, Yau, C, Hayes, DN, Parker, JS, Wilkerson, MD, Ally, A, Balasundaram, M, Brooks, D, Carlsen, R, Chuah, E, Dhalla, N, Holt, R, Jones, SJM, Kasaian, K, Lee, D, Ma, Y, Marra, MA, Mayo, M, Moore, RA, Mungall, AJ, Mungall, K, Sadeghi, S, Schein, JE, Sipahimalani, P, Tam, A, Thiessen, N, Tse, K, Wong, T, Berger, AC, Cherniack, AD, Cibulskis, C, Gabriel, SB, Gao, GF, Ha, G, Meyerson, M, Schumacher, SE, Shih, J, Kucherlapati, MH, Kucherlapati, RS, Baylin, S, Cope, L, Danilova, L, Bootwalla, MS, Lai, PH, Maglinte, DT, Van Den Berg, DJ, Weisenberger, DJ, Auman, JT, Balu, S, Bodenheimer, T, Fan, C, Hoadley, KA, Hoyle, AP, Jefferys, SR, Jones, CD, Meng, S, Mieczkowski, PA, Mose, LE, Perou, AH, Perou, CM, Roach, J, Shi, Y, Simons, JV, Skelly, T, Soloway, MG, Tan, D, Veluvolu, U, Hinoue, T, Laird, PW, Zhou, W, Bellair, M, Chang, K, Covington, K, Creighton, CJ, Dinh, H, Doddapaneni, H, Donehower, LA, Drummond, J, Glenn, R, Hale, W, Han, Y, Hu, J, Korchina, V, Lee, S, Lewis, L, Li, W, Liu, X, Morgan, M, Morton, D, Muzny, D, Santibanez, J, Sheth, M, Shinbrot, E, Wang, L, Wang, M, Xi, L, Zhao, F, Hess, J, Appelbaum, EL, Bailey, M, Cordes, MG, Ding, L, Fronick, CC, Fulton, LA, Fulton, RS, Kandoth, C, Mardis, ER, McLellan, MD, Miller, CA, Schmidt, HK, Wilson, RK, Crain, D, Curley, E, Gardner, J, Lau, K, Mallery, D, Morris, S, Paulauskis, J, Penny, R, Shelton, C, Shelton, T, Sherman, M, Thompson, E, Yena, P, Bowen, J, Gastier-Foster, JM, Gerken, M, Leraas, KM, Lichtenberg, TM, Ramirez, NC, Wise, L, Zmuda, E, Corcoran, N, Costello, T, Hovens, C, Carvalho, AL, de Carvalho, AC, Fregnani, JH, Longatto-Filho, A, Reis, RM, Scapulatempo-Neto, C, Silveira, HCS, Vidal, DO, Burnette, A, Eschbacher, J, Hermes, B, Noss, A, Singh, R, Anderson, ML, Castro, PD, Ittmann, M, Huntsman, D, Kohl, B, Le, X, Thorp, R, Andry, C, Duffy, ER, Lyadov, V, Paklina, O, Setdikova, G, Shabunin, A, Tavobilov, M, McPherson, C, Warnick, R, Berkowitz, R, Cramer, D, Feltmate, C, Horowitz, N, Kibel, A, Muto, M, Raut, CP, Malykh, A, Barnholtz-Sloan, JS, Barrett, W, Devine, K, Fulop, J, Ostrom, QT, Shimmel, K, Wolinsky, Y, Sloan, AE, De Rose, A, Giuliante, F, Goodman, M, Karlan, BY, Hagedorn, CH, Eckman, J, Harr, J, Tucker, K, Zach, LA, Deyarmin, B, Hu, H, Kvecher, L, Larson, C, Mural, RJ, Somiari, S, Vicha, A, Zelinka, T, Bennett, J, Iacocca, M, Rabeno, B, Swanson, P, Latour, M, Lacombe, L, Têtu, B, Bergeron, A, McGraw, M, Staugaitis, SM, Chabot, J, Hibshoosh, H, Sepulveda, A, Su, T, Wang, T, Potapova, O, Voronina, O, Desjardins, L, Mariani, O, Roman-Roman, S, Sastre, X, Stern, M-H, Cheng, F, Berchuck, A, Bigner, D, Lipp, E, Marks, J, McCall, S, McLendon, R, Secord, A, Sharp, A, Behera, M, Brat, DJ, Chen, A, Delman, K, Force, S, Khuri, F, Magliocca, K, Maithel, S, Olson, JJ, Owonikoko, T, Pickens, A, Ramalingam, S, Shin, DM, Sica, G, Van Meir, EG, Zhang, H, Eijckenboom, W, Gillis, A, Korpershoek, E, Looijenga, L, Oosterhuis, W, Stoop, H, van Kessel, KE, Zwarthoff, EC, Calatozzolo, C, Cuppini, L, Cuzzubbo, S, DiMeco, F, Finocchiaro, G, Mattei, L, Perin, A, Pollo, B, Chen, C, Houck, J, Lohavanichbutr, P, Hartmann, A, Stoehr, C, Stoehr, R, Taubert, H, Wach, S, Wullich, B, Kycler, W, Murawa, D, Wiznerowicz, M, Chung, K, Edenfield, WJ, Martin, J, Baudin, E, Bubley, G, Bueno, R, De Rienzo, A, Richards, WG, Kalkanis, S, Mikkelsen, T, Noushmehr, H, Scarpace, L, Girard, N, Aymerich, M, Campo, E, Giné, E, Guillermo, AL, Van Bang, N, Hanh, PT, Phu, BD, Tang, Y, Colman, H, Evason, K, Dottino, PR, Martignetti, JA, Gabra, H, Juhl, H, Akeredolu, T, Stepa, S, Hoon, D, Ahn, K, Kang, KJ, Beuschlein, F, Breggia, A, Birrer, M, Bell, D, Borad, M, Bryce, AH, Castle, E, Chandan, V, Cheville, J, Copland, JA, Farnell, M, Flotte, T, Giama, N, Ho, T, Kendrick, M, Kocher, J-P, Kopp, K, Moser, C, Nagorney, D, O’Brien, D, O’Neill, BP, Patel, T, Petersen, G, Que, F, Rivera, M, Roberts, L, Smallridge, R, Smyrk, T, Stanton, M, Thompson, RH, Torbenson, M, Yang, JD, Zhang, L, Brimo, F, Ajani, JA, Gonzalez, AMA, Behrens, C, Bondaruk, J, Broaddus, R, Czerniak, B, Esmaeli, B, Fujimoto, J, Gershenwald, J, Guo, C, Lazar, AJ, Logothetis, C, Meric-Bernstam, F, Moran, C, Ramondetta, L, Rice, D, Sood, A, Thompson, T, Troncoso, P, Tsao, A, Wistuba, I, Carter, C, Haydu, L, Hersey, P, Jakrot, V, Kakavand, H, and Kefford, R et al.. "The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma." Cell Reports 23, no. 1 (April 2018): 313-326.e5. Full Text
- Saltz, J, Gupta, R, Hou, L, Kurc, T, Singh, P, Nguyen, V, Samaras, D, Shroyer, KR, Zhao, T, Batiste, R, Van Arnam, J, Shmulevich, I, Rao, AUK, Lazar, AJ, Sharma, A, Thorsson, V, Caesar-Johnson, SJ, Demchok, JA, Felau, I, Kasapi, M, Ferguson, ML, Hutter, CM, Sofia, HJ, Tarnuzzer, R, Wang, Z, Yang, L, Zenklusen, JC, Zhang, JJ, Chudamani, S, Liu, J, Lolla, L, Naresh, R, Pihl, T, Sun, Q, Wan, Y, Wu, Y, Cho, J, DeFreitas, T, Frazer, S, Gehlenborg, N, Getz, G, Heiman, DI, Kim, J, Lawrence, MS, Lin, P, Meier, S, Noble, MS, Saksena, G, Voet, D, Zhang, H, Bernard, B, Chambwe, N, Dhankani, V, Knijnenburg, T, Kramer, R, Leinonen, K, Liu, Y, Miller, M, Reynolds, S, Thorsson, V, Zhang, W, Akbani, R, Broom, BM, Hegde, AM, Ju, Z, Kanchi, RS, Korkut, A, Li, J, Liang, H, Ling, S, Liu, W, Lu, Y, Mills, GB, Ng, K-S, Rao, A, Ryan, M, Wang, J, Weinstein, JN, Zhang, J, Abeshouse, A, Armenia, J, Chakravarty, D, Chatila, WK, de Bruijn, I, Gao, J, Gross, BE, Heins, ZJ, Kundra, R, La, K, Ladanyi, M, Luna, A, Nissan, MG, Ochoa, A, Phillips, SM, Reznik, E, Sanchez-Vega, F, Sander, C, Schultz, N, Sheridan, R, Sumer, SO, Sun, Y, Taylor, BS, Wang, J, Zhang, H, Anur, P, Peto, M, Spellman, P, Benz, C, Stuart, JM, Wong, CK, Yau, C, Hayes, DN, Parker, JS, Wilkerson, MD, Ally, A, Balasundaram, M, Bowlby, R, Brooks, D, Carlsen, R, Chuah, E, Dhalla, N, Holt, R, Jones, SJM, Kasaian, K, Lee, D, Ma, Y, Marra, MA, Mayo, M, Moore, RA, Mungall, AJ, Mungall, K, Robertson, AG, Sadeghi, S, Schein, JE, Sipahimalani, P, Tam, A, Thiessen, N, Tse, K, Wong, T, Berger, AC, Beroukhim, R, Cherniack, AD, Cibulskis, C, Gabriel, SB, Gao, GF, Ha, G, Meyerson, M, Schumacher, SE, Shih, J, Kucherlapati, MH, Kucherlapati, RS, Baylin, S, Cope, L, Danilova, L, Bootwalla, MS, Lai, PH, Maglinte, DT, Van Den Berg, DJ, Weisenberger, DJ, Auman, JT, Balu, S, Bodenheimer, T, Fan, C, Hoadley, KA, Hoyle, AP, Jefferys, SR, Jones, CD, Meng, S, Mieczkowski, PA, Mose, LE, Perou, AH, Perou, CM, Roach, J, Shi, Y, Simons, JV, Skelly, T, Soloway, MG, Tan, D, Veluvolu, U, Fan, H, Hinoue, T, Laird, PW, Shen, H, Zhou, W, Bellair, M, Chang, K, Covington, K, Creighton, CJ, Dinh, H, Doddapaneni, H, Donehower, LA, Drummond, J, Gibbs, RA, Glenn, R, Hale, W, Han, Y, Hu, J, Korchina, V, Lee, S, Lewis, L, Li, W, Liu, X, Morgan, M, Morton, D, Muzny, D, Santibanez, J, Sheth, M, Shinbrot, E, Wang, L, Wang, M, Wheeler, DA, Xi, L, Zhao, F, Hess, J, Appelbaum, EL, Bailey, M, Cordes, MG, Ding, L, Fronick, CC, Fulton, LA, Fulton, RS, Kandoth, C, Mardis, ER, McLellan, MD, Miller, CA, Schmidt, HK, Wilson, RK, Crain, D, Curley, E, Gardner, J, Lau, K, Mallery, D, Morris, S, Paulauskis, J, Penny, R, Shelton, C, Shelton, T, Sherman, M, Thompson, E, Yena, P, Bowen, J, Gastier-Foster, JM, Gerken, M, Leraas, KM, Lichtenberg, TM, Ramirez, NC, Wise, L, Zmuda, E, Corcoran, N, Costello, T, Hovens, C, Carvalho, AL, de Carvalho, AC, Fregnani, JH, Longatto-Filho, A, Reis, RM, Scapulatempo-Neto, C, Silveira, HCS, Vidal, DO, Burnette, A, Eschbacher, J, Hermes, B, Noss, A, Singh, R, Anderson, ML, Castro, PD, Ittmann, M, Huntsman, D, Kohl, B, Le, X, Thorp, R, Andry, C, Duffy, ER, Lyadov, V, Paklina, O, Setdikova, G, Shabunin, A, Tavobilov, M, McPherson, C, Warnick, R, Berkowitz, R, Cramer, D, Feltmate, C, Horowitz, N, Kibel, A, Muto, M, Raut, CP, Malykh, A, Barnholtz-Sloan, JS, Barrett, W, Devine, K, Fulop, J, Ostrom, QT, Shimmel, K, Wolinsky, Y, Sloan, AE, De Rose, A, Giuliante, F, Goodman, M, Karlan, BY, Hagedorn, CH, Eckman, J, Harr, J, Myers, J, Tucker, K, Zach, LA, Deyarmin, B, Hu, H, Kvecher, L, Larson, C, Mural, RJ, Somiari, S, Vicha, A, Zelinka, T, Bennett, J, Iacocca, M, Rabeno, B, Swanson, P, Latour, M, Lacombe, L, Têtu, B, Bergeron, A, McGraw, M, Staugaitis, SM, Chabot, J, Hibshoosh, H, Sepulveda, A, Su, T, Wang, T, Potapova, O, Voronina, O, Desjardins, L, Mariani, O, Roman-Roman, S, Sastre, X, Stern, M-H, Cheng, F, Signoretti, S, Berchuck, A, Bigner, D, Lipp, E, Marks, J, McCall, S, McLendon, R, Secord, A, Sharp, A, Behera, M, Brat, DJ, Chen, A, Delman, K, Force, S, Khuri, F, Magliocca, K, Maithel, S, Olson, JJ, Owonikoko, T, Pickens, A, Ramalingam, S, Shin, DM, Sica, G, Van Meir, EG, Zhang, H, Eijckenboom, W, Gillis, A, Korpershoek, E, Looijenga, L, Oosterhuis, W, Stoop, H, van Kessel, KE, Zwarthoff, EC, Calatozzolo, C, Cuppini, L, Cuzzubbo, S, DiMeco, F, Finocchiaro, G, Mattei, L, Perin, A, Pollo, B, Chen, C, Houck, J, Lohavanichbutr, P, Hartmann, A, Stoehr, C, Stoehr, R, Taubert, H, Wach, S, Wullich, B, Kycler, W, Murawa, D, Wiznerowicz, M, Chung, K, Edenfield, WJ, Martin, J, Baudin, E, Bubley, G, Bueno, R, De Rienzo, A, Richards, WG, Kalkanis, S, Mikkelsen, T, Noushmehr, H, Scarpace, L, Girard, N, Aymerich, M, Campo, E, Giné, E, Guillermo, AL, Van Bang, N, Hanh, PT, Phu, BD, Tang, Y, Colman, H, Evason, K, Dottino, PR, Martignetti, JA, Gabra, H, Juhl, H, Akeredolu, T, Stepa, S, Hoon, D, Ahn, K, Kang, KJ, Beuschlein, F, Breggia, A, Birrer, M, Bell, D, Borad, M, Bryce, AH, Castle, E, Chandan, V, Cheville, J, Copland, JA, Farnell, M, Flotte, T, Giama, N, Ho, T, Kendrick, M, Kocher, J-P, Kopp, K, Moser, C, Nagorney, D, O’Brien, D, O’Neill, BP, Patel, T, Petersen, G, Que, F, Rivera, M, Roberts, L, Smallridge, R, Smyrk, T, Stanton, M, Thompson, RH, Torbenson, M, Yang, JD, Zhang, L, Brimo, F, Ajani, JA, Gonzalez, AMA, Behrens, C, Bondaruk, J, Broaddus, R, Czerniak, B, Esmaeli, B, Fujimoto, J, Gershenwald, J, Guo, C, Logothetis, C, Meric-Bernstam, F, Moran, C, Ramondetta, L, Rice, D, Sood, A, Tamboli, P, Thompson, T, Troncoso, P, Tsao, A, Wistuba, I, Carter, C, Haydu, L, Hersey, P, Jakrot, V, Kakavand, H, Kefford, R, Lee, K, Long, G, Mann, G, Quinn, M, Saw, R, Scolyer, R, Shannon, K, Spillane, A, Stretch, O, Synott, M, Thompson, J, Wilmott, J, Al-Ahmadie, H, Chan, TA, Ghossein, R, Gopalan, A, and Levine, DA et al.. "Spatial Organization and Molecular Correlation of Tumor-Infiltrating Lymphocytes Using Deep Learning on Pathology Images." Cell Reports 23, no. 1 (April 2018): 181-193.e7. Full Text
- Sanchez-Vega, F, Mina, M, Armenia, J, Chatila, WK, Luna, A, La, KC, Dimitriadoy, S, Liu, DL, Kantheti, HS, Saghafinia, S, Chakravarty, D, Daian, F, Gao, Q, Bailey, MH, Liang, W-W, Foltz, SM, Shmulevich, I, Ding, L, Heins, Z, Ochoa, A, Gross, B, Gao, J, Zhang, H, Kundra, R, Kandoth, C, Bahceci, I, Dervishi, L, Dogrusoz, U, Zhou, W, Shen, H, Laird, PW, Way, GP, Greene, CS, Liang, H, Xiao, Y, Wang, C, Iavarone, A, Berger, AH, Bivona, TG, Lazar, AJ, Hammer, GD, Giordano, T, Kwong, LN, McArthur, G, Huang, C, Tward, AD, Frederick, MJ, McCormick, F, Meyerson, M, Van Allen, EM, Cherniack, AD, Ciriello, G, Sander, C, Schultz, N, Caesar-Johnson, SJ, Demchok, JA, Felau, I, Kasapi, M, Ferguson, ML, Hutter, CM, Sofia, HJ, Tarnuzzer, R, Wang, Z, Yang, L, Zenklusen, JC, Zhang, JJ, Chudamani, S, Liu, J, Lolla, L, Naresh, R, Pihl, T, Sun, Q, Wan, Y, Wu, Y, Cho, J, DeFreitas, T, Frazer, S, Gehlenborg, N, Getz, G, Heiman, DI, Kim, J, Lawrence, MS, Lin, P, Meier, S, Noble, MS, Saksena, G, Voet, D, Zhang, H, Bernard, B, Chambwe, N, Dhankani, V, Knijnenburg, T, Kramer, R, Leinonen, K, Liu, Y, Miller, M, Reynolds, S, Thorsson, V, Zhang, W, Akbani, R, Broom, BM, Hegde, AM, Ju, Z, Kanchi, RS, Korkut, A, Li, J, Ling, S, Liu, W, Lu, Y, Mills, GB, Ng, K-S, Rao, A, Ryan, M, Wang, J, Weinstein, JN, Zhang, J, Abeshouse, A, de Bruijn, I, Gross, BE, Heins, ZJ, La, K, Ladanyi, M, Nissan, MG, Phillips, SM, Reznik, E, Sheridan, R, Sumer, SO, Sun, Y, Taylor, BS, Wang, J, Anur, P, Peto, M, Spellman, P, Benz, C, Stuart, JM, Wong, CK, Yau, C, Hayes, DN, Parker, JS, Wilkerson, MD, Ally, A, Balasundaram, M, Bowlby, R, Brooks, D, Carlsen, R, Chuah, E, Dhalla, N, Holt, R, Jones, SJM, Kasaian, K, Lee, D, Ma, Y, Marra, MA, Mayo, M, Moore, RA, Mungall, AJ, Mungall, K, Robertson, AG, Sadeghi, S, Schein, JE, Sipahimalani, P, Tam, A, Thiessen, N, Tse, K, Wong, T, Berger, AC, Beroukhim, R, Cibulskis, C, Gabriel, SB, Gao, GF, Ha, G, Schumacher, SE, Shih, J, Kucherlapati, MH, Kucherlapati, RS, Baylin, S, Cope, L, Danilova, L, Bootwalla, MS, Lai, PH, Maglinte, DT, Van Den Berg, DJ, Weisenberger, DJ, Auman, JT, Balu, S, Bodenheimer, T, Fan, C, Hoadley, KA, Hoyle, AP, Jefferys, SR, Jones, CD, Meng, S, Mieczkowski, PA, Mose, LE, Perou, AH, Perou, CM, Roach, J, Shi, Y, Simons, JV, Skelly, T, Soloway, MG, Tan, D, Veluvolu, U, Fan, H, Hinoue, T, Bellair, M, Chang, K, Covington, K, Creighton, CJ, Dinh, H, Doddapaneni, H, Donehower, LA, Drummond, J, Gibbs, RA, Glenn, R, Hale, W, Han, Y, Hu, J, Korchina, V, Lee, S, Lewis, L, Li, W, Liu, X, Morgan, M, Morton, D, Muzny, D, Santibanez, J, Sheth, M, Shinbrot, E, Wang, L, Wang, M, Wheeler, DA, Xi, L, Zhao, F, Hess, J, Appelbaum, EL, Bailey, M, Cordes, MG, Fronick, CC, Fulton, LA, Fulton, RS, Mardis, ER, McLellan, MD, Miller, CA, Schmidt, HK, Wilson, RK, Crain, D, Curley, E, Gardner, J, Lau, K, Mallery, D, Morris, S, Paulauskis, J, Penny, R, Shelton, C, Shelton, T, Sherman, M, Thompson, E, Yena, P, Bowen, J, Gastier-Foster, JM, Gerken, M, Leraas, KM, Lichtenberg, TM, Ramirez, NC, Wise, L, Zmuda, E, Corcoran, N, Costello, T, Hovens, C, Carvalho, AL, de Carvalho, AC, Fregnani, JH, Longatto-Filho, A, Reis, RM, Scapulatempo-Neto, C, Silveira, HCS, Vidal, DO, Burnette, A, Eschbacher, J, Hermes, B, Noss, A, Singh, R, Anderson, ML, Castro, PD, Ittmann, M, Huntsman, D, Kohl, B, Le, X, Thorp, R, Andry, C, Duffy, ER, Lyadov, V, Paklina, O, Setdikova, G, Shabunin, A, Tavobilov, M, McPherson, C, Warnick, R, Berkowitz, R, Cramer, D, Feltmate, C, Horowitz, N, Kibel, A, Muto, M, Raut, CP, Malykh, A, Barnholtz-Sloan, JS, Barrett, W, Devine, K, Fulop, J, Ostrom, QT, Shimmel, K, Wolinsky, Y, Sloan, AE, De Rose, A, Giuliante, F, Goodman, M, Karlan, BY, Hagedorn, CH, Eckman, J, Harr, J, Myers, J, Tucker, K, Zach, LA, Deyarmin, B, Hu, H, Kvecher, L, Larson, C, Mural, RJ, Somiari, S, Vicha, A, Zelinka, T, Bennett, J, Iacocca, M, Rabeno, B, Swanson, P, Latour, M, Lacombe, L, Têtu, B, Bergeron, A, McGraw, M, Staugaitis, SM, Chabot, J, Hibshoosh, H, Sepulveda, A, Su, T, Wang, T, Potapova, O, Voronina, O, Desjardins, L, Mariani, O, Roman-Roman, S, Sastre, X, Stern, M-H, Cheng, F, Signoretti, S, Berchuck, A, Bigner, D, Lipp, E, Marks, J, McCall, S, McLendon, R, Secord, A, Sharp, A, Behera, M, Brat, DJ, Chen, A, Delman, K, Force, S, Khuri, F, Magliocca, K, Maithel, S, Olson, JJ, Owonikoko, T, Pickens, A, Ramalingam, S, Shin, DM, Sica, G, Van Meir, EG, Zhang, H, Eijckenboom, W, Gillis, A, Korpershoek, E, Looijenga, L, Oosterhuis, W, Stoop, H, van Kessel, KE, Zwarthoff, EC, Calatozzolo, C, Cuppini, L, Cuzzubbo, S, DiMeco, F, Finocchiaro, G, Mattei, L, Perin, A, Pollo, B, Chen, C, Houck, J, Lohavanichbutr, P, Hartmann, A, Stoehr, C, Stoehr, R, Taubert, H, Wach, S, Wullich, B, Kycler, W, Murawa, D, Wiznerowicz, M, Chung, K, Edenfield, WJ, Martin, J, Baudin, E, Bubley, G, Bueno, R, De Rienzo, A, Richards, WG, Kalkanis, S, Mikkelsen, T, Noushmehr, H, Scarpace, L, Girard, N, Aymerich, M, Campo, E, Giné, E, Guillermo, AL, Van Bang, N, Hanh, PT, Phu, BD, Tang, Y, Colman, H, Evason, K, Dottino, PR, Martignetti, JA, Gabra, H, Juhl, H, Akeredolu, T, Stepa, S, Hoon, D, Ahn, K, Kang, KJ, Beuschlein, F, Breggia, A, Birrer, M, Bell, D, Borad, M, Bryce, AH, Castle, E, Chandan, V, Cheville, J, Copland, JA, Farnell, M, Flotte, T, Giama, N, Ho, T, Kendrick, M, Kocher, J-P, Kopp, K, Moser, C, Nagorney, D, O’Brien, D, O’Neill, BP, Patel, T, Petersen, G, Que, F, Rivera, M, Roberts, L, Smallridge, R, Smyrk, T, Stanton, M, Thompson, RH, Torbenson, M, Yang, JD, Zhang, L, Brimo, F, Ajani, JA, Gonzalez, AMA, Behrens, C, Bondaruk, J, Broaddus, R, Czerniak, B, Esmaeli, B, Fujimoto, J, Gershenwald, J, Guo, C, Logothetis, C, Meric-Bernstam, F, Moran, C, Ramondetta, L, Rice, D, Sood, A, Tamboli, P, Thompson, T, Troncoso, P, Tsao, A, Wistuba, I, Carter, C, Haydu, L, Hersey, P, and Jakrot, V et al.. "Oncogenic Signaling Pathways in The Cancer Genome Atlas." Cell 173, no. 2 (April 2018): 321-337.e10. Full Text
- Seiler, M, Peng, S, Agrawal, AA, Palacino, J, Teng, T, Zhu, P, Smith, PG, Buonamici, S, Yu, L, Caesar-Johnson, SJ, Demchok, JA, Felau, I, Kasapi, M, Ferguson, ML, Hutter, CM, Sofia, HJ, Tarnuzzer, R, Wang, Z, Yang, L, Zenklusen, JC, Zhang, JJ, Chudamani, S, Liu, J, Lolla, L, Naresh, R, Pihl, T, Sun, Q, Wan, Y, Wu, Y, Cho, J, DeFreitas, T, Frazer, S, Gehlenborg, N, Getz, G, Heiman, DI, Kim, J, Lawrence, MS, Lin, P, Meier, S, Noble, MS, Saksena, G, Voet, D, Zhang, H, Bernard, B, Chambwe, N, Dhankani, V, Knijnenburg, T, Kramer, R, Leinonen, K, Liu, Y, Miller, M, Reynolds, S, Shmulevich, I, Thorsson, V, Zhang, W, Akbani, R, Broom, BM, Hegde, AM, Ju, Z, Kanchi, RS, Korkut, A, Li, J, Liang, H, Ling, S, Liu, W, Lu, Y, Mills, GB, Ng, K-S, Rao, A, Ryan, M, Wang, J, Weinstein, JN, Zhang, J, Abeshouse, A, Armenia, J, Chakravarty, D, Chatila, WK, de Bruijn, I, Gao, J, Gross, BE, Heins, ZJ, Kundra, R, La, K, Ladanyi, M, Luna, A, Nissan, MG, Ochoa, A, Phillips, SM, Reznik, E, Sanchez-Vega, F, Sander, C, Schultz, N, Sheridan, R, Sumer, SO, Sun, Y, Taylor, BS, Wang, J, Zhang, H, Anur, P, Peto, M, Spellman, P, Benz, C, Stuart, JM, Wong, CK, Yau, C, Hayes, DN, Parker, JS, Wilkerson, MD, Ally, A, Balasundaram, M, Bowlby, R, Brooks, D, Carlsen, R, Chuah, E, Dhalla, N, Holt, R, Jones, SJM, Kasaian, K, Lee, D, Ma, Y, Marra, MA, Mayo, M, Moore, RA, Mungall, AJ, Mungall, K, Robertson, AG, Sadeghi, S, Schein, JE, Sipahimalani, P, Tam, A, Thiessen, N, Tse, K, Wong, T, Berger, AC, Beroukhim, R, Cherniack, AD, Cibulskis, C, Gabriel, SB, Gao, GF, Ha, G, Meyerson, M, Schumacher, SE, Shih, J, Kucherlapati, MH, Kucherlapati, RS, Baylin, S, Cope, L, Danilova, L, Bootwalla, MS, Lai, PH, Maglinte, DT, Van Den Berg, DJ, Weisenberger, DJ, Auman, JT, Balu, S, Bodenheimer, T, Fan, C, Hoadley, KA, Hoyle, AP, Jefferys, SR, Jones, CD, Meng, S, Mieczkowski, PA, Mose, LE, Perou, AH, Perou, CM, Roach, J, Shi, Y, Simons, JV, Skelly, T, Soloway, MG, Tan, D, Veluvolu, U, Fan, H, Hinoue, T, Laird, PW, Shen, H, Zhou, W, Bellair, M, Chang, K, Covington, K, Creighton, CJ, Dinh, H, Doddapaneni, H, Donehower, LA, Drummond, J, Gibbs, RA, Glenn, R, Hale, W, Han, Y, Hu, J, Korchina, V, Lee, S, Lewis, L, Li, W, Liu, X, Morgan, M, Morton, D, Muzny, D, Santibanez, J, Sheth, M, Shinbrot, E, Wang, L, Wang, M, Wheeler, DA, Xi, L, Zhao, F, Hess, J, Appelbaum, EL, Bailey, M, Cordes, MG, Ding, L, Fronick, CC, Fulton, LA, Fulton, RS, Kandoth, C, Mardis, ER, McLellan, MD, Miller, CA, Schmidt, HK, Wilson, RK, Crain, D, Curley, E, Gardner, J, Lau, K, Mallery, D, Morris, S, Paulauskis, J, Penny, R, Shelton, C, Shelton, T, Sherman, M, Thompson, E, Yena, P, Bowen, J, Gastier-Foster, JM, Gerken, M, Leraas, KM, Lichtenberg, TM, Ramirez, NC, Wise, L, Zmuda, E, Corcoran, N, Costello, T, Hovens, C, Carvalho, AL, de Carvalho, AC, Fregnani, JH, Longatto-Filho, A, Reis, RM, Scapulatempo-Neto, C, Silveira, HCS, Vidal, DO, Burnette, A, Eschbacher, J, Hermes, B, Noss, A, Singh, R, Anderson, ML, Castro, PD, Ittmann, M, Huntsman, D, Kohl, B, Le, X, Thorp, R, Andry, C, Duffy, ER, Lyadov, V, Paklina, O, Setdikova, G, Shabunin, A, Tavobilov, M, McPherson, C, Warnick, R, Berkowitz, R, Cramer, D, Feltmate, C, Horowitz, N, Kibel, A, Muto, M, Raut, CP, Malykh, A, Barnholtz-Sloan, JS, Barrett, W, Devine, K, Fulop, J, Ostrom, QT, Shimmel, K, Wolinsky, Y, Sloan, AE, De Rose, A, Giuliante, F, Goodman, M, Karlan, BY, Hagedorn, CH, Eckman, J, Harr, J, Myers, J, Tucker, K, Zach, LA, Deyarmin, B, Hu, H, Kvecher, L, Larson, C, Mural, RJ, Somiari, S, Vicha, A, Zelinka, T, Bennett, J, Iacocca, M, Rabeno, B, Swanson, P, Latour, M, Lacombe, L, Têtu, B, Bergeron, A, McGraw, M, Staugaitis, SM, Chabot, J, Hibshoosh, H, Sepulveda, A, Su, T, Wang, T, Potapova, O, Voronina, O, Desjardins, L, Mariani, O, Roman-Roman, S, Sastre, X, Stern, M-H, Cheng, F, Signoretti, S, Berchuck, A, Bigner, D, Lipp, E, Marks, J, McCall, S, McLendon, R, Secord, A, Sharp, A, Behera, M, Brat, DJ, Chen, A, Delman, K, Force, S, Khuri, F, Magliocca, K, Maithel, S, Olson, JJ, Owonikoko, T, Pickens, A, Ramalingam, S, Shin, DM, Sica, G, Van Meir, EG, Zhang, H, Eijckenboom, W, Gillis, A, Korpershoek, E, Looijenga, L, Oosterhuis, W, Stoop, H, van Kessel, KE, Zwarthoff, EC, Calatozzolo, C, Cuppini, L, Cuzzubbo, S, DiMeco, F, Finocchiaro, G, Mattei, L, Perin, A, Pollo, B, Chen, C, Houck, J, Lohavanichbutr, P, Hartmann, A, Stoehr, C, Stoehr, R, Taubert, H, Wach, S, Wullich, B, Kycler, W, Murawa, D, Wiznerowicz, M, Chung, K, Edenfield, WJ, Martin, J, Baudin, E, Bubley, G, Bueno, R, De Rienzo, A, Richards, WG, Kalkanis, S, Mikkelsen, T, Noushmehr, H, Scarpace, L, Girard, N, Aymerich, M, Campo, E, Giné, E, Guillermo, AL, Van Bang, N, Hanh, PT, Phu, BD, Tang, Y, Colman, H, Evason, K, Dottino, PR, Martignetti, JA, Gabra, H, Juhl, H, Akeredolu, T, Stepa, S, Hoon, D, Ahn, K, Kang, KJ, Beuschlein, F, Breggia, A, Birrer, M, Bell, D, Borad, M, Bryce, AH, Castle, E, Chandan, V, Cheville, J, Copland, JA, Farnell, M, Flotte, T, Giama, N, Ho, T, Kendrick, M, Kocher, J-P, Kopp, K, Moser, C, Nagorney, D, O’Brien, D, O’Neill, BP, Patel, T, Petersen, G, Que, F, Rivera, M, Roberts, L, Smallridge, R, Smyrk, T, Stanton, M, Thompson, RH, Torbenson, M, Yang, JD, Zhang, L, Brimo, F, Ajani, JA, Angulo Gonzalez, AM, Behrens, C, Bondaruk, J, Broaddus, R, Czerniak, B, Esmaeli, B, Fujimoto, J, Gershenwald, J, Guo, C, Lazar, AJ, Logothetis, C, Meric-Bernstam, F, Moran, C, Ramondetta, L, Rice, D, Sood, A, Tamboli, P, Thompson, T, Troncoso, P, Tsao, A, Wistuba, I, Carter, C, Haydu, L, Hersey, P, Jakrot, V, Kakavand, H, Kefford, R, Lee, K, Long, G, Mann, G, Quinn, M, Saw, R, Scolyer, R, Shannon, K, Spillane, A, Stretch, J, Synott, M, Thompson, J, Wilmott, J, Al-Ahmadie, H, Chan, TA, Ghossein, R, Gopalan, A, Levine, DA, Reuter, V, Singer, S, Singh, B, Tien, NV, and Broudy, T et al.. "Somatic Mutational Landscape of Splicing Factor Genes and Their Functional Consequences across 33 Cancer Types." Cell Reports 23, no. 1 (April 2018): 282-296.e4. Full Text
- Taylor, AM, Shih, J, Ha, G, Gao, GF, Zhang, X, Berger, AC, Schumacher, SE, Wang, C, Hu, H, Liu, J, Lazar, AJ, Cherniack, AD, Beroukhim, R, Meyerson, M, Caesar-Johnson, SJ, Demchok, JA, Felau, I, Kasapi, M, Ferguson, ML, Hutter, CM, Sofia, HJ, Tarnuzzer, R, Wang, Z, Yang, L, Zenklusen, JC, Zhang, JJ, Chudamani, S, Liu, J, Lolla, L, Naresh, R, Pihl, T, Sun, Q, Wan, Y, Wu, Y, Cho, J, DeFreitas, T, Frazer, S, Gehlenborg, N, Getz, G, Heiman, DI, Kim, J, Lawrence, MS, Lin, P, Meier, S, Noble, MS, Saksena, G, Voet, D, Zhang, H, Bernard, B, Chambwe, N, Dhankani, V, Knijnenburg, T, Kramer, R, Leinonen, K, Liu, Y, Miller, M, Reynolds, S, Shmulevich, I, Thorsson, V, Zhang, W, Akbani, R, Broom, BM, Hegde, AM, Ju, Z, Kanchi, RS, Korkut, A, Li, J, Liang, H, Ling, S, Liu, W, Lu, Y, Mills, GB, Ng, K-S, Rao, A, Ryan, M, Wang, J, Weinstein, JN, Zhang, J, Abeshouse, A, Armenia, J, Chakravarty, D, Chatila, WK, de Bruijn, I, Gao, J, Gross, BE, Heins, ZJ, Kundra, R, La, K, Ladanyi, M, Luna, A, Nissan, MG, Ochoa, A, Phillips, SM, Reznik, E, Sanchez-Vega, F, Sander, C, Schultz, N, Sheridan, R, Sumer, SO, Sun, Y, Taylor, BS, Wang, J, Zhang, H, Anur, P, Peto, M, Spellman, P, Benz, C, Stuart, JM, Wong, CK, Yau, C, Hayes, DN, Parker, JS, Wilkerson, MD, Ally, A, Balasundaram, M, Bowlby, R, Brooks, D, Carlsen, R, Chuah, E, Dhalla, N, Holt, R, Jones, SJM, Kasaian, K, Lee, D, Ma, Y, Marra, MA, Mayo, M, Moore, RA, Mungall, AJ, Mungall, K, Robertson, AG, Sadeghi, S, Schein, JE, Sipahimalani, P, Tam, A, Thiessen, N, Tse, K, Wong, T, Cibulskis, C, Gabriel, SB, Kucherlapati, MH, Kucherlapati, RS, Baylin, S, Cope, L, Danilova, L, Bootwalla, MS, Lai, PH, Maglinte, DT, Van Den Berg, DJ, Weisenberger, DJ, Auman, JT, Balu, S, Bodenheimer, T, Fan, C, Hoadley, KA, Hoyle, AP, Jefferys, SR, Jones, CD, Meng, S, Mieczkowski, PA, Mose, LE, Perou, AH, Perou, CM, Roach, J, Shi, Y, Simons, JV, Skelly, T, Soloway, MG, Tan, D, Veluvolu, U, Fan, H, Hinoue, T, Laird, PW, Shen, H, Zhou, W, Bellair, M, Chang, K, Covington, K, Creighton, CJ, Dinh, H, Doddapaneni, H, Donehower, LA, Drummond, J, Gibbs, RA, Glenn, R, Hale, W, Han, Y, Hu, J, Korchina, V, Lee, S, Lewis, L, Li, W, Liu, X, Morgan, M, Morton, D, Muzny, D, Santibanez, J, Sheth, M, Shinbrot, E, Wang, L, Wang, M, Wheeler, DA, Xi, L, Zhao, F, Hess, J, Appelbaum, EL, Bailey, M, Cordes, MG, Ding, L, Fronick, CC, Fulton, LA, Fulton, RS, Kandoth, C, Mardis, ER, McLellan, MD, Miller, CA, Schmidt, HK, Wilson, RK, Crain, D, Curley, E, Gardner, J, Lau, K, Mallery, D, Morris, S, Paulauskis, J, Penny, R, Shelton, C, Shelton, T, Sherman, M, Thompson, E, Yena, P, Bowen, J, Gastier-Foster, JM, Gerken, M, Leraas, KM, Lichtenberg, TM, Ramirez, NC, Wise, L, Zmuda, E, Corcoran, N, Costello, T, Hovens, C, Carvalho, AL, de Carvalho, AC, Fregnani, JH, Longatto-Filho, A, Reis, RM, Scapulatempo-Neto, C, Silveira, HCS, Vidal, DO, Burnette, A, Eschbacher, J, Hermes, B, Noss, A, Singh, R, Anderson, ML, Castro, PD, Ittmann, M, Huntsman, D, Kohl, B, Le, X, Thorp, R, Andry, C, Duffy, ER, Lyadov, V, Paklina, O, Setdikova, G, Shabunin, A, Tavobilov, M, McPherson, C, Warnick, R, Berkowitz, R, Cramer, D, Feltmate, C, Horowitz, N, Kibel, A, Muto, M, Raut, CP, Malykh, A, Barnholtz-Sloan, JS, Barrett, W, Devine, K, Fulop, J, Ostrom, QT, Shimmel, K, Wolinsky, Y, Sloan, AE, De Rose, A, Giuliante, F, Goodman, M, Karlan, BY, Hagedorn, CH, Eckman, J, Harr, J, Myers, J, Tucker, K, Zach, LA, Deyarmin, B, Kvecher, L, Larson, C, Mural, RJ, Somiari, S, Vicha, A, Zelinka, T, Bennett, J, Iacocca, M, Rabeno, B, Swanson, P, Latour, M, Lacombe, L, Têtu, B, Bergeron, A, McGraw, M, Staugaitis, SM, Chabot, J, Hibshoosh, H, Sepulveda, A, Su, T, Wang, T, Potapova, O, Voronina, O, Desjardins, L, Mariani, O, Roman-Roman, S, Sastre, X, Stern, M-H, Cheng, F, Signoretti, S, Berchuck, A, Bigner, D, Lipp, E, Marks, J, McCall, S, McLendon, R, Secord, A, Sharp, A, Behera, M, Brat, DJ, Chen, A, Delman, K, Force, S, Khuri, F, Magliocca, K, Maithel, S, Olson, JJ, Owonikoko, T, Pickens, A, Ramalingam, S, Shin, DM, Sica, G, Van Meir, EG, Zhang, H, Eijckenboom, W, Gillis, A, Korpershoek, E, Looijenga, L, Oosterhuis, W, Stoop, H, van Kessel, KE, Zwarthoff, EC, Calatozzolo, C, Cuppini, L, Cuzzubbo, S, DiMeco, F, Finocchiaro, G, Mattei, L, Perin, A, Pollo, B, Chen, C, Houck, J, Lohavanichbutr, P, Hartmann, A, Stoehr, C, Stoehr, R, Taubert, H, Wach, S, Wullich, B, Kycler, W, Murawa, D, Wiznerowicz, M, Chung, K, Edenfield, WJ, Martin, J, Baudin, E, Bubley, G, Bueno, R, De Rienzo, A, Richards, WG, Kalkanis, S, Mikkelsen, T, Noushmehr, H, Scarpace, L, Girard, N, Aymerich, M, Campo, E, Giné, E, Guillermo, AL, Van Bang, N, Hanh, PT, Phu, BD, Tang, Y, Colman, H, Evason, K, Dottino, PR, Martignetti, JA, Gabra, H, Juhl, H, Akeredolu, T, Stepa, S, Hoon, D, Ahn, K, Kang, KJ, Beuschlein, F, Breggia, A, Birrer, M, Bell, D, Borad, M, Bryce, AH, Castle, E, Chandan, V, Cheville, J, Copland, JA, Farnell, M, Flotte, T, Giama, N, Ho, T, Kendrick, M, Kocher, J-P, Kopp, K, Moser, C, Nagorney, D, O’Brien, D, O’Neill, BP, Patel, T, Petersen, G, Que, F, Rivera, M, Roberts, L, Smallridge, R, Smyrk, T, Stanton, M, Thompson, RH, Torbenson, M, Yang, JD, Zhang, L, Brimo, F, Ajani, JA, Angulo Gonzalez, AM, Behrens, C, Bondaruk, J, Broaddus, R, Czerniak, B, Esmaeli, B, Fujimoto, J, Gershenwald, J, Guo, C, Logothetis, C, Meric-Bernstam, F, Moran, C, Ramondetta, L, Rice, D, Sood, A, Tamboli, P, Thompson, T, Troncoso, P, Tsao, A, Wistuba, I, Carter, C, Haydu, L, Hersey, P, Jakrot, V, Kakavand, H, Kefford, R, Lee, K, Long, G, Mann, G, Quinn, M, Saw, R, Scolyer, R, Shannon, K, Spillane, A, Stretch, J, Synott, M, Thompson, J, Wilmott, J, Al-Ahmadie, H, Chan, TA, Ghossein, R, Gopalan, A, Levine, DA, Reuter, V, Singer, S, Singh, B, Tien, NV, Broudy, T, Mirsaidi, C, Nair, P, Drwiega, P, Miller, J, and Smith, J et al.. "Genomic and Functional Approaches to Understanding Cancer Aneuploidy." Cancer Cell 33, no. 4 (April 2018): 676-689.e3. Full Text
- Thorsson, V, Gibbs, DL, Brown, SD, Wolf, D, Bortone, DS, Ou Yang, T-H, Porta-Pardo, E, Gao, GF, Plaisier, CL, Eddy, JA, Ziv, E, Culhane, AC, Paull, EO, Sivakumar, IKA, Gentles, AJ, Malhotra, R, Farshidfar, F, Colaprico, A, Parker, JS, Mose, LE, Vo, NS, Liu, J, Liu, Y, Rader, J, Dhankani, V, Reynolds, SM, Bowlby, R, Califano, A, Cherniack, AD, Anastassiou, D, Bedognetti, D, Rao, A, Chen, K, Krasnitz, A, Hu, H, Malta, TM, Noushmehr, H, Pedamallu, CS, Bullman, S, Ojesina, AI, Lamb, A, Zhou, W, Shen, H, Choueiri, TK, Weinstein, JN, Guinney, J, Saltz, J, Holt, RA, Rabkin, CE, Lazar, AJ, Serody, JS, Demicco, EG, Disis, ML, Vincent, BG, Shmulevich, L, Caesar-Johnson, SJ, Demchok, JA, Felau, I, Kasapi, M, Ferguson, ML, Hutter, CM, Sofia, HJ, Tarnuzzer, R, Wang, Z, Yang, L, Zenklusen, JC, Zhang, JJ, Chudamani, S, Liu, J, Lolla, L, Naresh, R, Pihl, T, Sun, Q, Wan, Y, Wu, Y, Cho, J, DeFreitas, T, Frazer, S, Gehlenborg, N, Getz, G, Heiman, DI, Kim, J, Lawrence, MS, Lin, P, Meier, S, Noble, MS, Saksena, G, Voet, D, Zhang, H, Bernard, B, Chambwe, N, Knijnenburg, T, Kramer, R, Leinonen, K, Miller, M, Reynolds, S, Shmulevich, I, Thorsson, V, Zhang, W, Akbani, R, Broom, BM, Hegde, AM, Ju, Z, Kanchi, RS, Korkut, A, Li, J, Liang, H, Ling, S, Liu, W, Lu, Y, Mills, GB, Ng, K-S, Ryan, M, Wang, J, Zhang, J, Abeshouse, A, Armenia, J, Chakravarty, D, Chatila, WK, de Bruijn, I, Gao, J, Gross, BE, Heins, ZJ, Kundra, R, La, K, Ladanyi, M, Luna, A, Nissan, MG, Ochoa, A, Phillips, SM, Reznik, E, Sanchez-Vega, F, Sander, C, Schultz, N, Sheridan, R, Sumer, SO, Sun, Y, Taylor, BS, Wang, J, Zhang, H, Anur, P, Peto, M, Spellman, P, Benz, C, Stuart, JM, Wong, CK, Yau, C, Hayes, DN, Wilkerson, MD, Ally, A, Balasundaram, M, Brooks, D, Carlsen, R, Chuah, E, Dhalla, N, Holt, R, Jones, SJM, Kasaian, K, Lee, D, Ma, Y, Marra, MA, Mayo, M, Moore, RA, Mungall, AJ, Mungall, K, Robertson, AG, Sadeghi, S, Schein, JE, Sipahimalani, P, Tam, A, Thiessen, N, Tse, K, Wong, T, Berger, AC, Beroukhim, R, Cibulskis, C, Gabriel, SB, Ha, G, Meyerson, M, Schumacher, SE, Shih, J, Kucherlapati, MH, Kucherlapati, RS, Baylin, S, Cope, L, Danilova, L, Bootwalla, MS, Lai, PH, Maglinte, DT, Van Den Berg, DJ, Weisenberger, DJ, Auman, JT, Balu, S, Bodenheimer, T, Fan, C, Hoadley, KA, Hoyle, AP, Jefferys, SR, Jones, CD, Meng, S, Mieczkowski, PA, Perou, AH, Perou, CM, Roach, J, Shi, Y, Simons, JV, Skelly, T, Soloway, MG, Tan, D, Veluvolu, U, Fan, H, Hinoue, T, Laird, PW, Bellair, M, Chang, K, Covington, K, Creighton, CJ, Dinh, H, Doddapaneni, H, Donehower, LA, Drummond, J, Gibbs, RA, Glenn, R, Hale, W, Han, Y, Hu, J, Korchina, V, Lee, S, Lewis, L, Li, W, Liu, X, Morgan, M, Morton, D, Muzny, D, Santibanez, J, Sheth, M, Shinbrot, E, Wang, L, Wang, M, Wheeler, DA, Xi, L, Zhao, F, Hess, J, Appelbaum, EL, Bailey, M, Cordes, MG, Ding, L, Fronick, CC, Fulton, LA, Fulton, RS, Kandoth, C, Mardis, ER, McLellan, MD, Miller, CA, Schmidt, HK, Wilson, RK, Crain, D, Curley, E, Gardner, J, Lau, K, Mallery, D, Morris, S, Paulauskis, J, Penny, R, Shelton, C, Shelton, T, Sherman, M, Thompson, E, Yena, P, Bowen, J, Gastier-Foster, JM, Gerken, M, Leraas, KM, Lichtenberg, TM, Ramirez, NC, Wise, L, Zmuda, E, Corcoran, N, Costello, T, Hovens, C, Carvalho, AL, de Carvalho, AC, Fregnani, JH, Longatto-Filho, A, Reis, RM, Scapulatempo-Neto, C, Silveira, HCS, Vidal, DO, Burnette, A, Eschbacher, J, Hermes, B, Noss, A, Singh, R, Anderson, ML, Castro, PD, Ittmann, M, Huntsman, D, Kohl, B, Le, X, Thorp, R, Andry, C, Duffy, ER, Lyadov, V, Paklina, O, Setdikova, G, Shabunin, A, Tavobilov, M, McPherson, C, Warnick, R, Berkowitz, R, Cramer, D, Feltmate, C, Horowitz, N, Kibel, A, Muto, M, Raut, CP, Malykh, A, Barnholtz-Sloan, JS, Barrett, W, Devine, K, Fulop, J, Ostrom, QT, Shimmel, K, Wolinsky, Y, Sloan, AE, De Rose, A, Giuliante, F, Goodman, M, Karlan, BY, Hagedorn, CH, Eckman, J, Harr, J, Myers, J, Tucker, K, Zach, LA, Deyarmin, B, Kvecher, L, Larson, C, Mural, RJ, Somiari, S, Vicha, A, Zelinka, T, Bennett, J, Iacocca, M, Rabeno, B, Swanson, P, Latour, M, Lacombe, L, Têtu, B, Bergeron, A, McGraw, M, Staugaitis, SM, Chabot, J, Hibshoosh, H, Sepulveda, A, Su, T, Wang, T, Potapova, O, Voronina, O, Desjardins, L, Mariani, O, Roman-Roman, S, Sastre, X, Stern, M-H, Cheng, F, Signoretti, S, Berchuck, A, Bigner, D, Lipp, E, Marks, J, McCall, S, McLendon, R, Secord, A, Sharp, A, Behera, M, Brat, DJ, Chen, A, Delman, K, Force, S, Khuri, F, Magliocca, K, Maithel, S, Olson, JJ, Owonikoko, T, Pickens, A, Ramalingam, S, Shin, DM, Sica, G, Van Meir, EG, Zhang, H, Eijckenboom, W, Gillis, A, Korpershoek, E, Looijenga, L, Oosterhuis, W, Stoop, H, van Kessel, KE, Zwarthoff, EC, Calatozzolo, C, Cuppini, L, Cuzzubbo, S, DiMeco, F, Finocchiaro, G, Mattei, L, Perin, A, Pollo, B, Chen, C, Houck, J, Lohavanichbutr, P, Hartmann, A, Stoehr, C, Stoehr, R, Taubert, H, Wach, S, Wullich, B, Kycler, W, Murawa, D, Wiznerowicz, M, Chung, K, Edenfield, WJ, Martin, J, Baudin, E, Bubley, G, Bueno, R, De Rienzo, A, Richards, WG, Kalkanis, S, Mikkelsen, T, Scarpace, L, Girard, N, Aymerich, M, Campo, E, Giné, E, Guillermo, AL, Van Bang, N, Hanh, PT, Phu, BD, Tang, Y, Colman, H, Evason, K, Dottino, PR, Martignetti, JA, Gabra, H, Juhl, H, Akeredolu, T, Stepa, S, Hoon, D, Ahn, K, Kang, KJ, Beuschlein, F, Breggia, A, Birrer, M, Bell, D, Borad, M, Bryce, AH, Castle, E, Chandan, V, Cheville, J, Copland, JA, Farnell, M, Flotte, T, Giama, N, Ho, T, Kendrick, M, Kocher, J-P, Kopp, K, Moser, C, Nagorney, D, O’Brien, D, O’Neill, BP, Patel, T, Petersen, G, Que, F, Rivera, M, Roberts, L, Smallridge, R, Smyrk, T, Stanton, M, Thompson, RH, Torbenson, M, Yang, JD, Zhang, L, Brimo, F, Ajani, JA, Gonzalez, AMA, Behrens, C, Bondaruk, J, Broaddus, R, Czerniak, B, Esmaeli, B, Fujimoto, J, Gershenwald, J, Guo, C, Logothetis, C, Meric-Bernstam, F, Moran, C, Ramondetta, L, Rice, D, Sood, A, and Tamboli, P et al.. "The Immune Landscape of Cancer." Immunity 48, no. 4 (April 2018): 812-830.e14. Full Text
- Wang, Z, Yang, B, Zhang, M, Guo, W, Wu, Z, Wang, Y, Jia, L, Li, S, Xie, W, Yang, D, Caesar-Johnson, SJ, Demchok, JA, Felau, I, Kasapi, M, Ferguson, ML, Hutter, CM, Sofia, HJ, Tarnuzzer, R, Wang, Z, Yang, L, Zenklusen, JC, Zhang, JJ, Chudamani, S, Liu, J, Lolla, L, Naresh, R, Pihl, T, Sun, Q, Wan, Y, Wu, Y, Cho, J, DeFreitas, T, Frazer, S, Gehlenborg, N, Getz, G, Heiman, DI, Kim, J, Lawrence, MS, Lin, P, Meier, S, Noble, MS, Saksena, G, Voet, D, Zhang, H, Bernard, B, Chambwe, N, Dhankani, V, Knijnenburg, T, Kramer, R, Leinonen, K, Liu, Y, Miller, M, Reynolds, S, Shmulevich, I, Thorsson, V, Zhang, W, Akbani, R, Broom, BM, Hegde, AM, Ju, Z, Kanchi, RS, Korkut, A, Li, J, Liang, H, Ling, S, Liu, W, Lu, Y, Mills, GB, Ng, K-S, Rao, A, Ryan, M, Wang, J, Weinstein, JN, Zhang, J, Abeshouse, A, Armenia, J, Chakravarty, D, Chatila, WK, Bruijn, I, Gao, J, Gross, BE, Heins, ZJ, Kundra, R, La, K, Ladanyi, M, Luna, A, Nissan, MG, Ochoa, A, Phillips, SM, Reznik, E, Sanchez-Vega, F, Sander, C, Schultz, N, Sheridan, R, Sumer, SO, Sun, Y, Taylor, BS, Wang, J, Zhang, H, Anur, P, Peto, M, Spellman, P, Benz, C, Stuart, JM, Wong, CK, Yau, C, Hayes, DN, Parker, JS, Wilkerson, MD, Ally, A, Balasundaram, M, Bowlby, R, Brooks, D, Carlsen, R, Chuah, E, Dhalla, N, Holt, R, Jones, SJM, Kasaian, K, Lee, D, Ma, Y, Marra, MA, Mayo, M, Moore, RA, Mungall, AJ, Mungall, K, Robertson, AG, Sadeghi, S, Schein, JE, Sipahimalani, P, Tam, A, Thiessen, N, Tse, K, Wong, T, Berger, AC, Beroukhim, R, Cherniack, AD, Cibulskis, C, Gabriel, SB, Gao, GF, Ha, G, Meyerson, M, Schumacher, SE, Shih, J, Kucherlapati, MH, Kucherlapati, RS, Baylin, S, Cope, L, Danilova, L, Bootwalla, MS, Lai, PH, Maglinte, DT, Van Den Berg, DJ, Weisenberger, DJ, Auman, JT, Balu, S, Bodenheimer, T, Fan, C, Hoadley, KA, Hoyle, AP, Jefferys, SR, Jones, CD, Meng, S, Mieczkowski, PA, Mose, LE, Perou, AH, Perou, CM, Roach, J, Shi, Y, Simons, JV, Skelly, T, Soloway, MG, Tan, D, Veluvolu, U, Fan, H, Hinoue, T, Laird, PW, Shen, H, Zhou, W, Bellair, M, Chang, K, Covington, K, Creighton, CJ, Dinh, H, Doddapaneni, H, Donehower, LA, Drummond, J, Gibbs, RA, Glenn, R, Hale, W, Han, Y, Hu, J, Korchina, V, Lee, S, Lewis, L, Li, W, Liu, X, Morgan, M, Morton, D, Muzny, D, Santibanez, J, Sheth, M, Shinbrot, E, Wang, L, Wang, M, Wheeler, DA, Xi, L, Zhao, F, Hess, J, Appelbaum, EL, Bailey, M, Cordes, MG, Ding, L, Fronick, CC, Fulton, LA, Fulton, RS, Kandoth, C, Mardis, ER, McLellan, MD, Miller, CA, Schmidt, HK, Wilson, RK, Crain, D, Curley, E, Gardner, J, Lau, K, Mallery, D, Morris, S, Paulauskis, J, Penny, R, Shelton, C, Shelton, T, Sherman, M, Thompson, E, Yena, P, Bowen, J, Gastier-Foster, JM, Gerken, M, Leraas, KM, Lichtenberg, TM, Ramirez, NC, Wise, L, Zmuda, E, Corcoran, N, Costello, T, Hovens, C, Carvalho, AL, de Carvalho, AC, Fregnani, JH, Longatto-Filho, A, Reis, RM, Scapulatempo-Neto, C, Silveira, HCS, Vidal, DO, Burnette, A, Eschbacher, J, Hermes, B, Noss, A, Singh, R, Anderson, ML, Castro, PD, Ittmann, M, Huntsman, D, Kohl, B, Le, X, Thorp, R, Andry, C, Duffy, ER, Lyadov, V, Paklina, O, Setdikova, G, Shabunin, A, Tavobilov, M, McPherson, C, Warnick, R, Berkowitz, R, Cramer, D, Feltmate, C, Horowitz, N, Kibel, A, Muto, M, Raut, CP, Malykh, A, Barnholtz-Sloan, JS, Barrett, W, Devine, K, Fulop, J, Ostrom, QT, Shimmel, K, Wolinsky, Y, Sloan, AE, De Rose, A, Giuliante, F, Goodman, M, Karlan, BY, Hagedorn, CH, Eckman, J, Harr, J, Myers, J, Tucker, K, Zach, LA, Deyarmin, B, Hu, H, Kvecher, L, Larson, C, Mural, RJ, Somiari, S, Vicha, A, Zelinka, T, Bennett, J, Iacocca, M, Rabeno, B, Swanson, P, Latour, M, Lacombe, L, Têtu, B, Bergeron, A, McGraw, M, Staugaitis, SM, Chabot, J, Hibshoosh, H, Sepulveda, A, Su, T, Wang, T, Potapova, O, Voronina, O, Desjardins, L, Mariani, O, Roman-Roman, S, Sastre, X, Stern, M-H, Cheng, F, Signoretti, S, Berchuck, A, Bigner, D, Lipp, E, Marks, J, McCall, S, McLendon, R, Secord, A, Sharp, A, Behera, M, Brat, DJ, Chen, A, Delman, K, Force, S, Khuri, F, Magliocca, K, Maithel, S, Olson, JJ, Owonikoko, T, Pickens, A, Ramalingam, S, Shin, DM, Sica, G, Van Meir, EG, Zhang, H, Eijckenboom, W, Gillis, A, Korpershoek, E, Looijenga, L, Oosterhuis, W, Stoop, H, van Kessel, KE, Zwarthoff, EC, Calatozzolo, C, Cuppini, L, Cuzzubbo, S, DiMeco, F, Finocchiaro, G, Mattei, L, Perin, A, Pollo, B, Chen, C, Houck, J, Lohavanichbutr, P, Hartmann, A, Stoehr, C, Stoehr, R, Taubert, H, Wach, S, Wullich, B, Kycler, W, Murawa, D, Wiznerowicz, M, Chung, K, Edenfield, WJ, Martin, J, Baudin, E, Bubley, G, Bueno, R, De Rienzo, A, Richards, WG, Kalkanis, S, Mikkelsen, T, Noushmehr, H, Scarpace, L, Girard, N, Aymerich, M, Campo, E, Giné, E, Guillermo, AL, Van Bang, N, Hanh, PT, Phu, BD, Tang, Y, Colman, H, Evason, K, Dottino, PR, Martignetti, JA, Gabra, H, Juhl, H, Akeredolu, T, Stepa, S, Hoon, D, Ahn, K, Kang, KJ, Beuschlein, F, Breggia, A, Birrer, M, Bell, D, Borad, M, Bryce, AH, Castle, E, Chandan, V, Cheville, J, Copland, JA, Farnell, M, Flotte, T, Giama, N, Ho, T, Kendrick, M, Kocher, J-P, Kopp, K, Moser, C, Nagorney, D, O’Brien, D, O’Neill, BP, Patel, T, Petersen, G, Que, F, Rivera, M, Roberts, L, Smallridge, R, Smyrk, T, Stanton, M, Thompson, RH, Torbenson, M, Yang, JD, Zhang, L, Brimo, F, Ajani, JA, Gonzalez, AMA, Behrens, C, Bondaruk, J, Broaddus, R, Czerniak, B, Esmaeli, B, Fujimoto, J, Gershenwald, J, Guo, C, Lazar, AJ, Logothetis, C, Meric-Bernstam, F, Moran, C, Ramondetta, L, Rice, D, Sood, A, Tamboli, P, Thompson, T, Troncoso, P, Tsao, A, Wistuba, I, Carter, C, Haydu, L, Hersey, P, Jakrot, V, Kakavand, H, Kefford, R, Lee, K, Long, G, Mann, G, Quinn, M, Saw, R, Scolyer, R, Shannon, K, Spillane, A, Stretch, J, Synott, M, Thompson, J, Wilmott, J, Al-Ahmadie, H, Chan, TA, Ghossein, R, Gopalan, A, Levine, DA, Reuter, V, Singer, S, Singh, B, and Tien, NV et al.. "lncRNA Epigenetic Landscape Analysis Identifies EPIC1 as an Oncogenic lncRNA that Interacts with MYC and Promotes Cell-Cycle Progression in Cancer." Cancer Cell 33, no. 4 (April 2018): 706-720.e9. Full Text
- Way, GP, Sanchez-Vega, F, La, K, Armenia, J, Chatila, WK, Luna, A, Sander, C, Cherniack, AD, Mina, M, Ciriello, G, Schultz, N, Sanchez, Y, Greene, CS, Caesar-Johnson, SJ, Demchok, JA, Felau, I, Kasapi, M, Ferguson, ML, Hutter, CM, Sofia, HJ, Tarnuzzer, R, Wang, Z, Yang, L, Zenklusen, JC, Zhang, JJ, Chudamani, S, Liu, J, Lolla, L, Naresh, R, Pihl, T, Sun, Q, Wan, Y, Wu, Y, Cho, J, DeFreitas, T, Frazer, S, Gehlenborg, N, Getz, G, Heiman, DI, Kim, J, Lawrence, MS, Lin, P, Meier, S, Noble, MS, Saksena, G, Voet, D, Zhang, H, Bernard, B, Chambwe, N, Dhankani, V, Knijnenburg, T, Kramer, R, Leinonen, K, Liu, Y, Miller, M, Reynolds, S, Shmulevich, I, Thorsson, V, Zhang, W, Akbani, R, Broom, BM, Hegde, AM, Ju, Z, Kanchi, RS, Korkut, A, Li, J, Liang, H, Ling, S, Liu, W, Lu, Y, Mills, GB, Ng, K-S, Rao, A, Ryan, M, Wang, J, Weinstein, JN, Zhang, J, Abeshouse, A, Chakravarty, D, de Bruijn, I, Gao, J, Gross, BE, Heins, ZJ, Kundra, R, Ladanyi, M, Nissan, MG, Ochoa, A, Phillips, SM, Reznik, E, Sheridan, R, Sumer, SO, Sun, Y, Taylor, BS, Wang, J, Zhang, H, Anur, P, Peto, M, Spellman, P, Benz, C, Stuart, JM, Wong, CK, Yau, C, Hayes, DN, Parker, JS, Wilkerson, MD, Ally, A, Balasundaram, M, Bowlby, R, Brooks, D, Carlsen, R, Chuah, E, Dhalla, N, Holt, R, Jones, SJM, Kasaian, K, Lee, D, Ma, Y, Marra, MA, Mayo, M, Moore, RA, Mungall, AJ, Mungall, K, Robertson, AG, Sadeghi, S, Schein, JE, Sipahimalani, P, Tam, A, Thiessen, N, Tse, K, Wong, T, Berger, AC, Beroukhim, R, Cibulskis, C, Gabriel, SB, Gao, GF, Ha, G, Meyerson, M, Schumacher, SE, Shih, J, Kucherlapati, MH, Kucherlapati, RS, Baylin, S, Cope, L, Danilova, L, Bootwalla, MS, Lai, PH, Maglinte, DT, Van Den Berg, DJ, Weisenberger, DJ, Auman, JT, Balu, S, Bodenheimer, T, Fan, C, Hoadley, KA, Hoyle, AP, Jefferys, SR, Jones, CD, Meng, S, Mieczkowski, PA, Mose, LE, Perou, AH, Perou, CM, Roach, J, Shi, Y, Simons, JV, Skelly, T, Soloway, MG, Tan, D, Veluvolu, U, Fan, H, Hinoue, T, Laird, PW, Shen, H, Zhou, W, Bellair, M, Chang, K, Covington, K, Creighton, CJ, Dinh, H, Doddapaneni, H, Donehower, LA, Drummond, J, Gibbs, RA, Glenn, R, Hale, W, Han, Y, Hu, J, Korchina, V, Lee, S, Lewis, L, Li, W, Liu, X, Morgan, M, Morton, D, Muzny, D, Santibanez, J, Sheth, M, Shinbrot, E, Wang, L, Wang, M, Wheeler, DA, Xi, L, Zhao, F, Hess, J, Appelbaum, EL, Bailey, M, Cordes, MG, Ding, L, Fronick, CC, Fulton, LA, Fulton, RS, Kandoth, C, Mardis, ER, McLellan, MD, Miller, CA, Schmidt, HK, Wilson, RK, Crain, D, Curley, E, Gardner, J, Lau, K, Mallery, D, Morris, S, Paulauskis, J, Penny, R, Shelton, C, Shelton, T, Sherman, M, Thompson, E, Yena, P, Bowen, J, Gastier-Foster, JM, Gerken, M, Leraas, KM, Lichtenberg, TM, Ramirez, NC, Wise, L, Zmuda, E, Corcoran, N, Costello, T, Hovens, C, Carvalho, AL, de Carvalho, AC, Fregnani, JH, Longatto-Filho, A, Reis, RM, Scapulatempo-Neto, C, Silveira, HCS, Vidal, DO, Burnette, A, Eschbacher, J, Hermes, B, Noss, A, Singh, R, Anderson, ML, Castro, PD, Ittmann, M, Huntsman, D, Kohl, B, Le, X, Thorp, R, Andry, C, Duffy, ER, Lyadov, V, Paklina, O, Setdikova, G, Shabunin, A, Tavobilov, M, McPherson, C, Warnick, R, Berkowitz, R, Cramer, D, Feltmate, C, Horowitz, N, Kibel, A, Muto, M, Raut, CP, Malykh, A, Barnholtz-Sloan, JS, Barrett, W, Devine, K, Fulop, J, Ostrom, QT, Shimmel, K, Wolinsky, Y, Sloan, AE, De Rose, A, Giuliante, F, Goodman, M, Karlan, BY, Hagedorn, CH, Eckman, J, Harr, J, Myers, J, Tucker, K, Zach, LA, Deyarmin, B, Hu, H, Kvecher, L, Larson, C, Mural, RJ, Somiari, S, Vicha, A, Zelinka, T, Bennett, J, Iacocca, M, Rabeno, B, Swanson, P, Latour, M, Lacombe, L, Têtu, B, Bergeron, A, McGraw, M, Staugaitis, SM, Chabot, J, Hibshoosh, H, Sepulveda, A, Su, T, Wang, T, Potapova, O, Voronina, O, Desjardins, L, Mariani, O, Roman-Roman, S, Sastre, X, Stern, M-H, Cheng, F, Signoretti, S, Berchuck, A, Bigner, D, Lipp, E, Marks, J, McCall, S, McLendon, R, Secord, A, Sharp, A, Behera, M, Brat, DJ, Chen, A, Delman, K, Force, S, Khuri, F, Magliocca, K, Maithel, S, Olson, JJ, Owonikoko, T, Pickens, A, Ramalingam, S, Shin, DM, Sica, G, Van Meir, EG, Zhang, H, Eijckenboom, W, Gillis, A, Korpershoek, E, Looijenga, L, Oosterhuis, W, Stoop, H, van Kessel, KE, Zwarthoff, EC, Calatozzolo, C, Cuppini, L, Cuzzubbo, S, DiMeco, F, Finocchiaro, G, Mattei, L, Perin, A, Pollo, B, Chen, C, Houck, J, Lohavanichbutr, P, Hartmann, A, Stoehr, C, Stoehr, R, Taubert, H, Wach, S, Wullich, B, Kycler, W, Murawa, D, Wiznerowicz, M, Chung, K, Edenfield, WJ, Martin, J, Baudin, E, Bubley, G, Bueno, R, De Rienzo, A, Richards, WG, Kalkanis, S, Mikkelsen, T, Noushmehr, H, Scarpace, L, Girard, N, Aymerich, M, Campo, E, Giné, E, Guillermo, AL, Van Bang, N, Hanh, PT, Phu, BD, Tang, Y, Colman, H, Evason, K, Dottino, PR, Martignetti, JA, Gabra, H, Juhl, H, Akeredolu, T, Stepa, S, Hoon, D, Ahn, K, Kang, KJ, Beuschlein, F, Breggia, A, Birrer, M, Bell, D, Borad, M, Bryce, AH, Castle, E, Chandan, V, Cheville, J, Copland, JA, Farnell, M, Flotte, T, Giama, N, Ho, T, Kendrick, M, Kocher, J-P, Kopp, K, Moser, C, Nagorney, D, O’Brien, D, O’Neill, BP, Patel, T, Petersen, G, Que, F, Rivera, M, Roberts, L, Smallridge, R, Smyrk, T, Stanton, M, Thompson, RH, Torbenson, M, Yang, JD, Zhang, L, Brimo, F, Ajani, JA, Gonzalez, AMA, Behrens, C, Bondaruk, J, Broaddus, R, Czerniak, B, Esmaeli, B, Fujimoto, J, Gershenwald, J, Guo, C, Lazar, AJ, Logothetis, C, Meric-Bernstam, F, Moran, C, Ramondetta, L, Rice, D, Sood, A, Tamboli, P, Thompson, T, Troncoso, P, Tsao, A, Wistuba, I, Carter, C, Haydu, L, Hersey, P, Jakrot, V, Kakavand, H, Kefford, R, Lee, K, Long, G, Mann, G, Quinn, M, Saw, R, Scolyer, R, Shannon, K, Spillane, A, Stretch, J, Synott, M, Thompson, J, Wilmott, J, Al-Ahmadie, H, Chan, TA, Ghossein, R, Gopalan, A, Levine, DA, Reuter, V, Singer, S, Singh, B, Tien, NV, Broudy, T, Mirsaidi, C, Nair, P, Drwiega, P, and Miller, J et al.. "Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas." Cell Reports 23, no. 1 (April 2018): 172-180.e3. Full Text
- Ellrott, K, Bailey, MH, Saksena, G, Covington, KR, Kandoth, C, Stewart, C, Hess, J, Ma, S, Chiotti, KE, McLellan, M, Sofia, HJ, Hutter, C, Getz, G, Wheeler, D, Ding, L, Caesar-Johnson, SJ, Demchok, JA, Felau, I, Kasapi, M, Ferguson, ML, Hutter, CM, Tarnuzzer, R, Wang, Z, Yang, L, Zenklusen, JC, Zhang, JJ, Chudamani, S, Liu, J, Lolla, L, Naresh, R, Pihl, T, Sun, Q, Wan, Y, Wu, Y, Cho, J, DeFreitas, T, Frazer, S, Gehlenborg, N, Heiman, DI, Kim, J, Lawrence, MS, Lin, P, Meier, S, Noble, MS, Voet, D, Zhang, H, Bernard, B, Chambwe, N, Dhankani, V, Knijnenburg, T, Kramer, R, Leinonen, K, Liu, Y, Miller, M, Reynolds, S, Shmulevich, I, Thorsson, V, Zhang, W, Akbani, R, Broom, BM, Hegde, AM, Ju, Z, Kanchi, RS, Korkut, A, Li, J, Liang, H, Ling, S, Liu, W, Lu, Y, Mills, GB, Ng, K-S, Rao, A, Ryan, M, Wang, J, Weinstein, JN, Zhang, J, Abeshouse, A, Armenia, J, Chakravarty, D, Chatila, WK, de Bruijn, I, Gao, J, Gross, BE, Heins, ZJ, Kundra, R, La, K, Ladanyi, M, Luna, A, Nissan, MG, Ochoa, A, Phillips, SM, Reznik, E, Sanchez-Vega, F, Sander, C, Schultz, N, Sheridan, R, Sumer, SO, Sun, Y, Taylor, BS, Wang, J, Zhang, H, Anur, P, Peto, M, Spellman, P, Benz, C, Stuart, JM, Wong, CK, Yau, C, Hayes, DN, Parker, , Wilkerson, MD, Ally, A, Balasundaram, M, Bowlby, R, Brooks, D, Carlsen, R, Chuah, E, Dhalla, N, Holt, R, Jones, SJM, Kasaian, K, Lee, D, Ma, Y, Marra, MA, Mayo, M, Moore, RA, Mungall, AJ, Mungall, K, Robertson, AG, Sadeghi, S, Schein, JE, Sipahimalani, P, Tam, A, Thiessen, N, Tse, K, Wong, T, Berger, AC, Beroukhim, R, Cherniack, AD, Cibulskis, C, Gabriel, SB, Gao, GF, Ha, G, Meyerson, M, Schumacher, SE, Shih, J, Kucherlapati, MH, Kucherlapati, RS, Baylin, S, Cope, L, Danilova, L, Bootwalla, MS, Lai, PH, Maglinte, DT, Van Den Berg, DJ, Weisenberger, DJ, Auman, JT, Balu, S, Bodenheimer, T, Fan, C, Hoadley, KA, Hoyle, AP, Jefferys, SR, Jones, CD, Meng, S, Mieczkowski, PA, Mose, LE, Perou, AH, Perou, CM, Roach, J, Shi, Y, Simons, JV, Skelly, T, Soloway, MG, Tan, D, Veluvolu, U, Fan, H, Hinoue, T, Laird, PW, Shen, H, Zhou, W, Bellair, M, Chang, K, Covington, K, Creighton, CJ, Dinh, H, Doddapaneni, H, Donehower, LA, Drummond, J, Gibbs, RA, Glenn, R, Hale, W, Han, Y, Hu, J, Korchina, V, Lee, S, Lewis, L, Li, W, Liu, X, Morgan, M, Morton, D, Muzny, D, Santibanez, J, Sheth, M, Shinbrot, E, Wang, L, Wang, M, Wheeler, DA, Xi, L, Zhao, F, Appelbaum, EL, Bailey, M, Cordes, MG, Fronick, CC, Fulton, LA, Fulton, RS, Mardis, ER, McLellan, MD, Miller, CA, Schmidt, HK, Wilson, RK, Crain, D, Curley, E, Gardner, J, Lau, K, Mallery, D, Morris, S, Paulauskis, J, Penny, R, Shelton, C, Shelton, T, Sherman, M, Thompson, E, Yena, P, Bowen, J, Gastier-Foster, JM, Gerken, M, Leraas, KM, Lichtenberg, TM, Ramirez, NC, Wise, L, Zmuda, E, Corcoran, N, Costello, T, Hovens, C, Carvalho, AL, de Carvalho, AC, Fregnani, JH, Longatto-Filho, A, Reis, RM, Scapulatempo-Neto, C, Silveira, HCS, Vidal, DO, Burnette, A, Eschbacher, J, Hermes, B, Noss, A, Singh, R, Anderson, ML, Castro, PD, Ittmann, M, Huntsman, D, Kohl, B, Le, X, Thorp, R, Andry, C, Duffy, ER, Lyadov, V, Paklina, O, Setdikova, G, Shabunin, A, Tavobilov, M, McPherson, C, Warnick, R, Berkowitz, R, Cramer, D, Feltmate, C, Horowitz, N, Kibel, A, Muto, M, Raut, CP, Malykh, A, Barnholtz-Sloan, JS, Barrett, W, Devine, K, Fulop, J, Ostrom, QT, Shimmel, K, Wolinsky, Y, Sloan, AE, De Rose, A, Giuliante, F, Goodman, M, Karlan, BY, Hagedorn, CH, Eckman, J, Harr, J, Myers, J, Tucker, K, Zach, LA, Deyarmin, B, Hu, H, Kvecher, L, Larson, C, Mural, RJ, Somiari, S, Vicha, A, Zelinka, T, Bennett, J, Iacocca, M, Rabeno, B, Swanson, P, Latour, M, Lacombe, L, Têtu, B, Bergeron, A, McGraw, M, Staugaitis, SM, Chabot, J, Hibshoosh, H, Sepulveda, A, Su, T, Wang, T, Potapova, O, Voronina, O, Desjardins, L, Mariani, O, Roman-Roman, S, Sastre, X, Stern, M-H, Cheng, F, Signoretti, S, Berchuck, A, Bigner, D, Lipp, E, Marks, J, McCall, S, McLendon, R, Secord, A, Sharp, A, Behera, M, Brat, DJ, Chen, A, Delman, K, Force, S, Khuri, F, Magliocca, K, Maithel, S, Olson, JJ, Owonikoko, T, Pickens, A, Ramalingam, S, Shin, DM, Sica, G, Van Meir, EG, Zhang, H, Eijckenboom, W, Gillis, A, Korpershoek, E, Looijenga, L, Oosterhuis, W, Stoop, H, van Kessel, KE, Zwarthoff, EC, Calatozzolo, C, Cuppini, L, Cuzzubbo, S, DiMeco, F, Finocchiaro, G, Mattei, L, Perin, A, Pollo, B, Chen, C, Houck, J, Lohavanichbutr, P, Hartmann, A, Stoehr, C, Stoehr, R, Taubert, H, Wach, S, Wullich, B, Kycler, W, Murawa, D, Wiznerowicz, M, Chung, K, Edenfield, WJ, Martin, J, Baudin, E, Bubley, G, Bueno, R, De Rienzo, A, Richards, WG, Kalkanis, S, Mikkelsen, T, Noushmehr, H, Scarpace, L, Girard, N, Aymerich, M, Campo, E, Giné, E, Guillermo, AL, Van Bang, N, Hanh, PT, Phu, BD, Tang, Y, Colman, H, Evason, K, Dottino, PR, Martignetti, JA, Gabra, H, Juhl, H, Akeredolu, T, Stepa, S, Hoon, D, Ahn, K, Kang, KJ, Beuschlein, F, Breggia, A, Birrer, M, Bell, D, Borad, M, Bryce, AH, Castle, E, Chandan, V, Cheville, J, Copland, JA, Farnell, M, Flotte, T, Giama, N, Ho, T, Kendrick, M, Kocher, J-P, Kopp, K, Moser, C, Nagorney, D, O’Brien, D, O’Neill, BP, Patel, T, Petersen, G, Que, F, Rivera, M, Roberts, L, Smallridge, R, Smyrk, T, Stanton, M, Thompson, RH, Torbenson, M, Yang, JD, Zhang, L, Brimo, F, Ajani, JA, Angulo Gonzalez, AM, Behrens, C, Bondaruk, J, Broaddus, R, Czerniak, B, Esmaeli, B, Fujimoto, J, Gershenwald, J, Guo, C, Lazar, AJ, Logothetis, C, Meric-Bernstam, F, Moran, C, Ramondetta, L, Rice, D, Sood, A, Tamboli, P, Thompson, T, Troncoso, P, Tsao, A, Wistuba, I, Carter, C, Haydu, L, Hersey, P, Jakrot, V, Kakavand, H, Kefford, R, Lee, K, Long, G, Mann, G, Quinn, M, Saw, R, Scolyer, R, Shannon, K, Spillane, A, Stretch, J, Synott, M, Thompson, J, Wilmott, J, Al-Ahmadie, H, Chan, TA, Ghossein, R, Gopalan, A, Levine, DA, Reuter, V, Singer, S, Singh, B, Tien, NV, and Broudy, T et al.. "Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines." Cell Systems 6, no. 3 (March 2018): 271-281.e7. Full Text
- Schaub, FX, Dhankani, V, Berger, AC, Trivedi, M, Richardson, AB, Shaw, R, Zhao, W, Zhang, X, Ventura, A, Liu, Y, Ayer, DE, Hurlin, PJ, Cherniack, AD, Eisenman, RN, Bernard, B, Grandori, C, Caesar-Johnson, SJ, Demchok, JA, Felau, I, Kasapi, M, Ferguson, ML, Hutter, CM, Sofia, HJ, Tarnuzzer, R, Wang, Z, Yang, L, Zenklusen, JC, Zhang, JJ, Chudamani, S, Liu, J, Lolla, L, Naresh, R, Pihl, T, Sun, Q, Wan, Y, Wu, Y, Cho, J, DeFreitas, T, Frazer, S, Gehlenborg, N, Getz, G, Heiman, DI, Kim, J, Lawrence, MS, Lin, P, Meier, S, Noble, MS, Saksena, G, Voet, D, Zhang, H, Chambwe, N, Knijnenburg, T, Kramer, R, Leinonen, K, Miller, M, Reynolds, S, Shmulevich, I, Thorsson, V, Zhang, W, Akbani, R, Broom, BM, Hegde, AM, Ju, Z, Kanchi, RS, Korkut, A, Li, J, Liang, H, Ling, S, Liu, W, Lu, Y, Mills, GB, Ng, K-S, Rao, A, Ryan, M, Wang, J, Weinstein, JN, Zhang, J, Abeshouse, A, Armenia, J, Chakravarty, D, Chatila, WK, de Bruijn, I, Gao, J, Gross, BE, Heins, ZJ, Kundra, R, La, K, Ladanyi, M, Luna, A, Nissan, MG, Ochoa, A, Phillips, SM, Reznik, E, Sanchez-Vega, F, Sander, C, Schultz, N, Sheridan, R, Sumer, SO, Sun, Y, Taylor, BS, Wang, J, Zhang, H, Anur, P, Peto, M, Spellman, P, Benz, C, Stuart, JM, Wong, CK, Yau, C, Hayes, DN, Parker, JS, Wilkerson, MD, Ally, A, Balasundaram, M, Bowlby, R, Brooks, D, Carlsen, R, Chuah, E, Dhalla, N, Holt, R, Jones, SJM, Kasaian, K, Lee, D, Ma, Y, Marra, MA, Mayo, M, Moore, RA, Mungall, AJ, Mungall, K, Robertson, AG, Sadeghi, S, Schein, JE, Sipahimalani, P, Tam, A, Thiessen, N, Tse, K, Wong, T, Beroukhim, R, Cibulskis, C, Gabriel, SB, Gao, GF, Ha, G, Meyerson, M, Schumacher, SE, Shih, J, Kucherlapati, MH, Kucherlapati, RS, Baylin, S, Cope, L, Danilova, L, Bootwalla, MS, Lai, PH, Maglinte, DT, Van Den Berg, DJ, Weisenberger, DJ, Auman, JT, Balu, S, Bodenheimer, T, Fan, C, Hoadley, KA, Hoyle, AP, Jefferys, SR, Jones, CD, Meng, S, Mieczkowski, PA, Mose, LE, Perou, AH, Perou, CM, Roach, J, Shi, Y, Simons, JV, Skelly, T, Soloway, MG, Tan, D, Veluvolu, U, Fan, H, Hinoue, T, Laird, PW, Shen, H, Zhou, W, Bellair, M, Chang, K, Covington, K, Creighton, CJ, Dinh, H, Doddapaneni, H, Donehower, LA, Drummond, J, Gibbs, RA, Glenn, R, Hale, W, Han, Y, Hu, J, Korchina, V, Lee, S, Lewis, L, Li, W, Liu, X, Morgan, M, Morton, D, Muzny, D, Santibanez, J, Sheth, M, Shinbrot, E, Wang, L, Wang, M, Wheeler, DA, Xi, L, Zhao, F, Hess, J, Appelbaum, EL, Bailey, M, Cordes, MG, Ding, L, Fronick, CC, Fulton, LA, Fulton, RS, Kandoth, C, Mardis, ER, McLellan, MD, Miller, CA, Schmidt, HK, Wilson, RK, Crain, D, Curley, E, Gardner, J, Lau, K, Mallery, D, Morris, S, Paulauskis, J, Penny, R, Shelton, C, Shelton, T, Sherman, M, Thompson, E, Yena, P, Bowen, J, Gastier-Foster, JM, Gerken, M, Leraas, KM, Lichtenberg, TM, Ramirez, NC, Wise, L, Zmuda, E, Corcoran, N, Costello, T, Hovens, C, Carvalho, AL, de Carvalho, AC, Fregnani, JH, Longatto-Filho, A, Reis, RM, Scapulatempo-Neto, C, Silveira, HCS, Vidal, DO, Burnette, A, Eschbacher, J, Hermes, B, Noss, A, Singh, R, Anderson, ML, Castro, PD, Ittmann, M, Huntsman, D, Kohl, B, Le, X, Thorp, R, Andry, C, Duffy, ER, Lyadov, V, Paklina, O, Setdikova, G, Shabunin, A, Tavobilov, M, McPherson, C, Warnick, R, Berkowitz, R, Cramer, D, Feltmate, C, Horowitz, N, Kibel, A, Muto, M, Raut, CP, Malykh, A, Barnholtz-Sloan, JS, Barrett, W, Devine, K, Fulop, J, Ostrom, QT, Shimmel, K, Wolinsky, Y, Sloan, AE, De Rose, A, Giuliante, F, Goodman, M, Karlan, BY, Hagedorn, CH, Eckman, J, Harr, J, Myers, J, Tucker, K, Zach, LA, Deyarmin, B, Hu, H, Kvecher, L, Larson, C, Mural, RJ, Somiari, S, Vicha, A, Zelinka, T, Bennett, J, Iacocca, M, Rabeno, B, Swanson, P, Latour, M, Lacombe, L, Têtu, B, Bergeron, A, McGraw, M, Staugaitis, SM, Chabot, J, Hibshoosh, H, Sepulveda, A, Su, T, Wang, T, Potapova, O, Voronina, O, Desjardins, L, Mariani, O, Roman-Roman, S, Sastre, X, Stern, M-H, Cheng, F, Signoretti, S, Berchuck, A, Bigner, D, Lipp, E, Marks, J, McCall, S, McLendon, R, Secord, A, Sharp, A, Behera, M, Brat, DJ, Chen, A, Delman, K, Force, S, Khuri, F, Magliocca, K, Maithel, S, Olson, JJ, Owonikoko, T, Pickens, A, Ramalingam, S, Shin, DM, Sica, G, Van Meir, EG, Zhang, H, Eijckenboom, W, Gillis, A, Korpershoek, E, Looijenga, L, Oosterhuis, W, Stoop, H, van Kessel, KE, Zwarthoff, EC, Calatozzolo, C, Cuppini, L, Cuzzubbo, S, DiMeco, F, Finocchiaro, G, Mattei, L, Perin, A, Pollo, B, Chen, C, Houck, J, Lohavanichbutr, P, Hartmann, A, Stoehr, C, Stoehr, R, Taubert, H, Wach, S, Wullich, B, Kycler, W, Murawa, D, Wiznerowicz, M, Chung, K, Edenfield, WJ, Martin, J, Baudin, E, Bubley, G, Bueno, R, De Rienzo, A, Richards, WG, Kalkanis, S, Mikkelsen, T, Noushmehr, H, Scarpace, L, Girard, N, Aymerich, M, Campo, E, Giné, E, Guillermo, AL, Van Bang, N, Hanh, PT, Phu, BD, Tang, Y, Colman, H, Evason, K, Dottino, PR, Martignetti, JA, Gabra, H, Juhl, H, Akeredolu, T, Stepa, S, Hoon, D, Ahn, K, Kang, KJ, Beuschlein, F, Breggia, A, Birrer, M, Bell, D, Borad, M, Bryce, AH, Castle, E, Chandan, V, Cheville, J, Copland, JA, Farnell, M, Flotte, T, Giama, N, Ho, T, Kendrick, M, Kocher, J-P, Kopp, K, Moser, C, Nagorney, D, O’Brien, D, O’Neill, BP, Patel, T, Petersen, G, Que, F, Rivera, M, Roberts, L, Smallridge, R, Smyrk, T, Stanton, M, Thompson, RH, Torbenson, M, Yang, JD, Zhang, L, Brimo, F, Ajani, JA, Angulo Gonzalez, AM, Behrens, C, Bondaruk, J, Broaddus, R, Czerniak, B, Esmaeli, B, Fujimoto, J, Gershenwald, J, Guo, C, Lazar, AJ, Logothetis, C, Meric-Bernstam, F, Moran, C, Ramondetta, L, Rice, D, Sood, A, Tamboli, P, Thompson, T, Troncoso, P, Tsao, A, Wistuba, I, Carter, C, Haydu, L, Hersey, P, Jakrot, V, Kakavand, H, Kefford, R, Lee, K, Long, G, Mann, G, Quinn, M, Saw, R, Scolyer, R, Shannon, K, Spillane, A, Stretch, J, Synott, M, Thompson, J, Wilmott, J, Al-Ahmadie, H, Chan, TA, Ghossein, R, Gopalan, A, Levine, DA, Reuter, V, Singer, S, and Singh, B et al.. "Pan-cancer Alterations of the MYC Oncogene and Its Proximal Network across the Cancer Genome Atlas." Cell Systems 6, no. 3 (March 2018): 282-300.e2. Full Text
- Hemmerich, A, Shaar, M, Burbridge, R, Guy, CD, McCall, SJ, Cardona, DM, Zhang, X, Lai, J, and Zhang, X. "Metastatic Renal Cell Carcinoma as Solitary Subcentimeter Polypoid Gastric Mucosal Lesions: Clinicopathologic Analysis of Five Cases." Gastroenterology research 11, no. 1 (February 23, 2018): 25-30. Full Text Open Access Copy
- McCall, SJ, Branton, PA, Blanc, VM, Dry, SM, Gastier-Foster, JM, Harrison, JH, Jewell, SD, Dash, RC, Obeng, RC, Rose, J, Mateski, DL, Liubinskas, A, Robb, JA, Ramirez, NC, and Shea, K. "The College of American Pathologists Biorepository Accreditation Program: Results from the First 5 Years." Biopreservation and biobanking (February 2, 2018). Full Text
- Harrison, G, Hemmerich, A, Guy, C, Perkinson, K, Fleming, D, McCall, S, Cardona, D, and Zhang, X. "Overexpression of SOX11 and TFE3 in Solid-Pseudopapillary Neoplasms of the Pancreas." American Journal of Clinical Pathology 149, no. 1 (December 2017): 67-75. Full Text
- Singleton, KR, Crawford, L, Tsui, E, Manchester, HE, Maertens, O, Liu, X, Liberti, MV, Magpusao, AN, Stein, EM, Tingley, JP, Frederick, DT, Boland, GM, Flaherty, KT, McCall, SJ, Krepler, C, Sproesser, K, Herlyn, M, Adams, DJ, Locasale, JW, Cichowski, K, Mukherjee, S, and Wood, KC. "Melanoma Therapeutic Strategies that Select against Resistance by Exploiting MYC-Driven Evolutionary Convergence." Cell Reports 21, no. 10 (December 2017): 2796-2812. Full Text
- Yi, JS, Ready, N, Healy, P, Dumbauld, C, Osborne, R, Berry, M, Shoemaker, D, Clarke, J, Crawford, J, Tong, B, Harpole, D, D'Amico, TA, McSherry, F, Dunphy, F, McCall, SJ, Christensen, JD, Wang, X, and Weinhold, KJ. "Immune Activation in Early-Stage Non-Small Cell Lung Cancer Patients Receiving Neoadjuvant Chemotherapy Plus Ipilimumab." Clinical Cancer Research : an Official Journal of the American Association for Cancer Research 23, no. 24 (December 2017): 7474-7482. Full Text
- von Furstenberg, RJ, Li, J, Stolarchuk, C, Feder, R, Campbell, A, Kruger, L, Gonzalez, LM, Blikslager, AT, Cardona, DM, McCall, SJ, Henning, SJ, and Garman, KS. "Porcine Esophageal Submucosal Gland Culture Model Shows Capacity for Proliferation and Differentiation." Cellular and Molecular Gastroenterology and Hepatology 4, no. 3 (November 2017): 385-404. Full Text
- Krüger, L, Gonzalez, LM, Pridgen, TA, McCall, SJ, von Furstenberg, RJ, Harnden, I, Carnighan, GE, Cox, AM, Blikslager, AT, and Garman, KS. "Ductular and proliferative response of esophageal submucosal glands in a porcine model of esophageal injury and repair." American Journal of Physiology. Gastrointestinal and Liver Physiology 313, no. 3 (September 2017): G180-G191. Full Text
- Anderson, GR, Winter, PS, Lin, KH, Nussbaum, DP, Cakir, M, Stein, EM, Soderquist, RS, Crawford, L, Leeds, JC, Newcomb, R, Stepp, P, Yip, C, Wardell, SE, Tingley, JP, Ali, M, Xu, M, Ryan, M, McCall, SJ, McRee, AJ, Counter, CM, Der, CJ, and Wood, KC. "A Landscape of Therapeutic Cooperativity in KRAS Mutant Cancers Reveals Principles for Controlling Tumor Evolution." Cell Reports 20, no. 4 (July 2017): 999-1015. Full Text
- Volmar, KE, McCall, SJ, Schifman, RB, Talbert, ML, Tworek, JA, Hulkower, KI, Guidi, AJ, Nakhleh, RE, Souers, RJ, Bashleben, CP, and Blond, BJ. "Professional Practice Evaluation for Pathologists: The Development, Life, and Death of the Evalumetrics Program." Archives of pathology & laboratory medicine 141, no. 4 (April 2017): 551-558. Full Text
- Cancer Genome Atlas Research Network, , Analysis Working Group: Asan University, , BC Cancer Agency, , Brigham and Women’s Hospital, , Broad Institute, , Brown University, , Case Western Reserve University, , Dana-Farber Cancer Institute, , Duke University, , Greater Poland Cancer Centre, , Harvard Medical School, , Institute for Systems Biology, , KU Leuven, , Mayo Clinic, , Memorial Sloan Kettering Cancer Center, , National Cancer Institute, , and Nationwide Children’s Hospital, et al. "Integrated genomic characterization of oesophageal carcinoma." Nature 541, no. 7636 (January 4, 2017): 169-175. Full Text
- Andry, C, Duffy, E, Moskaluk, CA, McCall, S, Roehrl, MHA, and Remick, D. "Biobanking-Budgets and the Role of Pathology Biobanks in Precision Medicine." Academic Pathology 4 (January 2017): 2374289517702924-null. Full Text
- Anderson, GR, Wardell, SE, Cakir, M, Crawford, L, Leeds, JC, Nussbaum, DP, Shankar, PS, Soderquist, RS, Stein, EM, Tingley, JP, Winter, PS, Zieser-Misenheimer, EK, Alley, HM, Yllanes, A, Haney, V, Blackwell, KL, McCall, SJ, McDonnell, DP, and Wood, KC. "PIK3CA mutations enable targeting of a breast tumor dependency through mTOR-mediated MCL-1 translation." Science Translational Medicine 8, no. 369 (December 2016): 369ra175-null. Full Text Open Access Copy
- Patel, YA, McCall, SJ, Zhang, X, Jaffe, T, and Shimpi, RA. "Radiographic and endoscopic regression of metastatic gastric cancer to the colon in the setting of 5-aminosalicylic acid use." Journal of gastrointestinal oncology 7, no. 6 (December 2016): E88-E92. Full Text
- Hesler, RA, Huang, JJ, Starr, MD, Treboschi, VM, Bernanke, AG, Nixon, AB, McCall, SJ, White, RR, and Blobe, GC. "TGF-β-induced stromal CYR61 promotes resistance to gemcitabine in pancreatic ductal adenocarcinoma through downregulation of the nucleoside transporters hENT1 and hCNT3." Carcinogenesis 37, no. 11 (November 2016): 1041-1051. Full Text
- McCall, SJ, Souers, RJ, Blond, B, and Massie, L. "Physician Satisfaction With Clinical Laboratory Services: A College of American Pathologists Q-Probes Study of 81 Institutions." Archives of Pathology & Laboratory Medicine 140, no. 10 (October 2016): 1098-1103. Full Text
- Wood, KC, Anderson, GR, Wardell, SE, Jasper, JS, Stein, EM, Martz, CA, Alley, HM, Haney, V, Yllanes, A, Blackwell, KL, McCall, SJ, and McDonnell, DP. "Identification and Therapeutic Inhibition of Pathways Driving Resistance to Targeted Breast Cancer Therapies." JOURNAL OF WOMENS HEALTH 25, no. 9 (September 2016): 976-976. Link to Item
- Kapadia, A, Morris, R, Albanese, K, Spencer, J, McCall, S, and Greenberg, J. "TH-AB-209-10: Breast Cancer Identification Through X-Ray Coherent Scatter Spectral Imaging." Medical physics 43, no. 6 (June 2016): 3865-. Full Text
- Ludmir, EB, McCall, SJ, Cardona, DM, Perkinson, KR, Guy, CD, and Zhang, X. "Mixed Adenoneuroendocrine Carcinoma, Amphicrine Type, of the Small Bowel." American journal of clinical pathology 145, no. 5 (May 2016): 703-709. Full Text
- Detweiler, CJ, Cardona, DM, Hsu, DS, and McCall, SJ. "Primary high-grade neuroendocrine carcinoma emerging from an adenomatous polyp in the setting of familial adenomatous polyposis." BMJ case reports 2016 (February 16, 2016). Full Text
- Garman, KS, Kruger, L, Thomas, S, Swiderska-Syn, M, Moser, BK, Diehl, AM, and McCall, SJ. "Ductal metaplasia in oesophageal submucosal glands is associated with inflammation and oesophageal adenocarcinoma." Histopathology 67, no. 6 (December 2015): 771-782. Full Text
- Cancer Genome Atlas Research Network, . "The Molecular Taxonomy of Primary Prostate Cancer." Cell 163, no. 4 (November 2015): 1011-1025. Full Text
- Sun, Z, Galeotti, J, McCall, SJ, and Mantyh, C. "Metastatic gallbladder cancer masquerading as primary colon malignancy." Clinical Medicine Review Case Reports 2 (June 1, 2015): 1-3.
- Shahid, RA, Wang, DQ-H, Fee, BE, McCall, SJ, Romac, JM-J, Vigna, SR, and Liddle, RA. "Endogenous elevation of plasma cholecystokinin does not prevent gallstones." European journal of clinical investigation 45, no. 3 (March 2015): 237-246. Full Text
- Zhang, T, Boswell, EL, McCall, SJ, and Hsu, DS. "Mismatch repair gone awry: Management of Lynch syndrome." Critical reviews in oncology/hematology 93, no. 3 (March 2015): 170-179. (Review) Full Text
- Zhong, J, Palta, M, Willett, CG, McCall, SJ, McSherry, F, Tyler, DS, Uronis, HE, and Czito, BG. "Patterns of failure for stage I ampulla of Vater adenocarcinoma: a single institutional experience." Journal of gastrointestinal oncology 5, no. 6 (December 2014): 421-427. Full Text
- Cancer Genome Atlas Research Network, . "Comprehensive molecular characterization of gastric adenocarcinoma." Nature 513, no. 7517 (September 2014): 202-209. Full Text
- Tworek, JA, Volmar, KE, McCall, SJ, Bashleben, CP, and Howanitz, PJ. "Q-Probes studies in anatomic pathology: quality improvement through targeted benchmarking." Archives of pathology & laboratory medicine 138, no. 9 (September 2014): 1156-1166. Full Text
- Strickler, JH, McCall, S, Nixon, AB, Brady, JC, Pang, H, Rushing, C, Cohn, A, Starodub, A, Arrowood, C, Haley, S, Meadows, KL, Morse, MA, Uronis, HE, Blobe, GC, Hsu, SD, Zafar, SY, and Hurwitz, HI. "Phase I study of dasatinib in combination with capecitabine, oxaliplatin and bevacizumab followed by an expanded cohort in previously untreated metastatic colorectal cancer." Investigational New Drugs 32, no. 2 (April 2014): 330-339. Full Text
- Ludmir, EB, McCall, SJ, Czito, BG, and Palta, M. "Radiosensitive orbital metastasis as presentation of occult colonic adenocarcinoma." BMJ case reports 2014 (January 2014). Full Text
- Strickler, JH, McCall, S, Nixon, AB, Brady, JC, Pang, H, Rushing, C, Cohn, A, Starodub, A, Arrowood, C, Haley, S, Meadows, KL, Morse, MA, Uronis, HE, Blobe, GC, Hsu, SD, Zafar, SY, and Hurwitz, HI. "Phase i study of dasatinib in combination with capecitabine, oxaliplatin and bevacizumab followed by an expanded cohort in previously untreated metastatic colorectal cancer." Investigational New Drugs 32, no. 2 (January 1, 2014): 330-339. Full Text
- Zhong, J, Palta, M, Willett, CG, McCall, SJ, Bulusu, A, Tyler, DS, White, RR, Uronis, HE, Pappas, TN, and Czito, BG. "The role of local excision in invasive adenocarcinoma of the ampulla of Vater." J Gastrointest Oncol 4, no. 1 (March 2013): 8-13. Full Text Link to Item
- Guy, CD, Suzuki, A, Burchette, JL, Brunt, EM, Abdelmalek, MF, Cardona, D, McCall, SJ, Ünalp, A, Belt, P, Ferrell, LD, Diehl, AM, and Nonalcoholic Steatohepatitis Clinical Research Network, . "Costaining for keratins 8/18 plus ubiquitin improves detection of hepatocyte injury in nonalcoholic fatty liver disease." Hum Pathol 43, no. 6 (June 2012): 790-800. Full Text Link to Item
- Czito, BG, Willett, C, Palta, M, McCall, S, Gee, N, Hurwitz, H, Coleman, RE, Zafar, Y, Kennedy-Newton, P, and Uronis, H. "A phase I/II study of capecitabine (Cape), oxaliplatin (Ox), panitumumab (Pmab), and external beam radiation therapy (RT) for patients with esophagogastric carcinoma (EC)." Journal of clinical oncology : official journal of the American Society of Clinical Oncology 30, no. 4_suppl (February 2012): 68-.
- Uronis, JM, Osada, T, McCall, S, Yang, XY, Mantyh, C, Morse, MA, Lyerly, HK, Clary, BM, and Hsu, DS. "Histological and molecular evaluation of patient-derived colorectal cancer explants." PLoS One 7, no. 6 (2012): e38422-. Full Text Link to Item
- Omenetti, A, Bass, LM, Anders, RA, Clemente, MG, Francis, H, Guy, CD, McCall, S, Choi, SS, Alpini, G, Schwarz, KB, Diehl, AM, and Whitington, PF. "Hedgehog activity, epithelial-mesenchymal transitions, and biliary dysmorphogenesis in biliary atresia." Hepatology 53, no. 4 (April 2011): 1246-1258. Full Text Link to Item
- Rossol-Allison, J, Stemmle, LN, Swenson-Fields, KI, Kelly, P, Fields, PE, McCall, SJ, Casey, PJ, and Fields, TA. "Rho GTPase activity modulates Wnt3a/beta-catenin signaling." Cell Signal 21, no. 11 (November 2009): 1559-1568. Full Text Link to Item
- Sicklick, JK, Huang, J, McCall, SJ, Torbenson, MS, and Diehl, AM. "Analysis of Hepatic Progenitor Populations in Methyl Deficient Liver Injury." ANNALS OF SURGICAL ONCOLOGY 16 (February 2009): 33-33. Link to Item
- Ouyang, X, Cirillo, P, Sautin, Y, McCall, S, Bruchette, JL, Diehl, AM, Johnson, RJ, and Abdelmalek, MF. "Fructose consumption as a risk factor for non-alcoholic fatty liver disease." Journal of Hepatology 48, no. 6 (June 2008): 993-999. Full Text
- Romac, JMJ, McCall, SJ, Humphrey, JE, Heo, J, and Liddle, RA. "Pharmacologic disruption of TRPV1-expressing primary sensory neurons but not genetic deletion of TRPV1 protects mice against pancreatitis." Pancreas 36, no. 4 (May 2008): 394-401. Full Text Link to Item
- Yamaguchi, K, Yang, L, McCall, S, Huang, J, Yu, XX, Pandey, SK, Bhanot, S, Monia, BP, Li, Y-X, and Diehl, AM. "Diacylglycerol acyltranferase 1 anti-sense oligonucleotides reduce hepatic fibrosis in mice with nonalcoholic steatohepatitis." Hepatology 47, no. 2 (February 2008): 625-635. Full Text Link to Item
- Adams, GL, Manson, RJ, Giangiacomo, DM, Fronheiser, L, McCall, S, Nightingale, R, Hasselblad, V, Shaw, LK, Milton, L, and Lawson, JH. "Effectiveness of Glycerol Mono-oleate as a Biosealant." J Invasive Cardiol 20, no. 1 (January 2008): 29-34. Link to Item
- Yamaguchi, K, Yang, L, McCall, S, Huang, J, Yu, XX, Pandey, SK, Bhanot, S, Monia, BP, Li, Y-X, and Diehl, AM. "Inhibiting triglyceride synthesis improves hepatic steatosis but exacerbates liver damage and fibrosis in obese mice with nonalcoholic steatohepatitis." Hepatology (Baltimore, Md.) 45, no. 6 (June 2007): 1366-1374. Full Text
- Jung, Y, McCall, SJ, Li, Y-X, and Diehl, AM. "Bile ductules and stromal cells express hedgehog ligands and/or hedgehog target genes in primary biliary cirrhosis." Hepatology 45, no. 5 (May 2007): 1091-1096. Full Text Link to Item
- Omenetti, A, Yang, L, Li, Y-X, McCall, SJ, Jung, Y, Sicklick, JK, Huang, J, Choi, S, Suzuki, A, and Diehl, AM. "Hedgehog-mediated mesenchymal-epithelial interactions modulate hepatic response to bile duct ligation." Lab Invest 87, no. 5 (May 2007): 499-514. Full Text Link to Item
- Malakauskas, SM, Quan, H, Fields, TA, McCall, SJ, Yu, M-J, Kourany, WM, Frey, CW, and Le, TH. "Aminoaciduria and altered renal expression of luminal amino acid transporters in mice lacking novel gene collectrin." Am J Physiol Renal Physiol 292, no. 2 (February 2007): F533-F544. Full Text Link to Item
- Sicklick, JK, Choi, SS, Bustamante, M, McCall, SJ, Pérez, EH, Huang, J, Li, Y-X, Rojkind, M, and Diehl, AM. "Evidence for epithelial-mesenchymal transitions in adult liver cells." American Journal of Physiology. Gastrointestinal and Liver Physiology 291, no. 4 (October 2006): G575-G583. Full Text
- McCall, SJ, Nassar, R, Malouf, NN, Saunders, AJ, Oakeley, AE, Henderson, PM, Solaro, RJ, Pielak, GJ, Alexander, KA, and Anderson, PAW. "Development and cardiac contractility: cardiac troponin T isoforms and cytosolic calcium in rabbit." Pediatr Res 60, no. 3 (September 2006): 276-281. Full Text Link to Item
- Suzuki, A, McCall, S, Choi, SS, Sicklick, JK, Huang, J, Qi, Y, Zdanowicz, M, Camp, T, Li, Y-X, and Diehl, AM. "Interleukin-15 increases hepatic regenerative activity." Journal of Hepatology 45, no. 3 (September 2006): 410-418. Full Text
- Hu, CK, McCall, S, Madden, J, Huang, H, Clough, R, Jirtle, RL, and Anscher, MS. "Loss of heterozygosity of M6P/IGF2R gene is an early event in the development of prostate cancer." Prostate Cancer Prostatic Dis 9, no. 1 (2006): 62-67. Full Text Link to Item
- Fields, TA, McCall, SJ, Reams, BD, Roggli, VL, Palmer, SM, and Howell, DN. "Pulmonary embolization of microcrystalline cellulose in a lung transplant recipient." The Journal of Heart and Lung Transplantation : the Official Publication of the International Society for Heart Transplantation 24, no. 5 (May 2005): 624-627. Full Text
- McCall, SJ, Tuttle-Newhall, JE, Howell, DN, and Fields, TA. "Prognostic significance of microvascular thrombosis in donor kidney allograft biopsies." Transplantation 75, no. 11 (June 15, 2003): 1847-1852. Full Text Link to Item
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- Teaching & Mentoring
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Recent Courses
- Scholarly, Clinical, & Service Activities
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Service to the Profession
- President-Elect. North Carolina Society of Pathologists. 2017 - 2018 2017 - 2018
- Vice-Chair. Biorepository Accreditation Program Committee. College of American Pathologists. 2017 - 2020 2017 - 2020
- Vice President. North Carolina Society of Pathologists. 2015 - 2016 2015 - 2016
- Member. Biorepository Accreditation Program Committee. College of American Pathologists. 2014 - 2016 2014 - 2016
- Member. Quality Practices Committee. College of American Pathologists. 2013 - 2017 2013 - 2017
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Service to Duke
- Duke Medicine. Biobanking Executive Committee. 2015 - 2020 2015 - 2020
- Director, Biospecimen Repository & Processing Core Laboratory. Duke Cancer Institute, Duke School of Medicine. 2013 - 2020 2013 - 2020
- Duke Medicine. Biobanking Advisory Committee. 2013 - 2020 2013 - 2020
- School of Medicine. Chair Search Committee for Department of Pathology. 2013 - 2015 2013 - 2015
- Associate Director, Biospecimen Repository & Processing Core Laboratory. Duke Cancer Institute, Duke School of Medicine. 2012 2012
- Duke Medicine. Diagnostic Technology Committee. 2011 - 2020 2011 - 2020
- Department of Pathology. Operations Committee. 2010 - 2015 2010 - 2015
- Director, Anatomic Pathology Quality Assurance. Department of Pathology. 2010 - 2015 2010 - 2015
Some information on this profile has been compiled automatically from Duke databases and external sources. (Our About page explains how this works.) If you see a problem with the information, please write to Scholars@Duke and let us know. We will reply promptly.
