Sonke Johnsen
Professor of Biology
Current Appointments & Affiliations
- Professor of Biology, Biology, Trinity College of Arts & Sciences 2012
- Professor in the Division of Marine Science and Conservation, Marine Science and Conservation, Nicholas School of the Environment 2022
- Faculty Network Member of the Duke Institute for Brain Sciences, Duke Institute for Brain Sciences, University Institutes and Centers 2008
- Associate of the Duke Initiative for Science & Society, Duke Science & Society, Initiatives 2017
Contact Information
- 301 Bio Sci Bldg, Durham, NC 27708
- Duke Box 90338, Durham, NC 27708-0338
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sjohnsen@duke.edu
(919) 660-7321
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lab website
- Background
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Education, Training, & Certifications
- Ph.D., University of North Carolina - Chapel Hill 1996
- B.A., Swarthmore College 1988
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Previous Appointments & Affiliations
- Associate Professor of Biology, Biology, Trinity College of Arts & Sciences 2007 - 2012
- Director of Graduate Studies for the Department of Biology, Biology, Trinity College of Arts & Sciences 2008 - 2011
- Assistant Professor of Biology, Biology, Trinity College of Arts & Sciences 2001 - 2007
- Recognition
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In the News
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JAN 3, 2023 Pratt School of Engineering -
DEC 9, 2022 Duke Research Blog -
NOV 5, 2020 -
JUL 16, 2020 -
JUL 13, 2020 -
MAR 10, 2020 -
FEB 24, 2020 -
JUN 24, 2019 CNN -
SEP 18, 2018 Duke Arts -
JUN 8, 2018 Interdisciplinary Studies -
MAY 30, 2018 -
APR 23, 2018 National Geographic -
MAR 12, 2018 -
FEB 13, 2017 -
NOV 3, 2016 -
AUG 23, 2016 -
AUG 23, 2016 Cosmos Magazine -
MAY 18, 2016 Science News -
FEB 29, 2016 -
JAN 8, 2016 Science Daily -
DEC 2, 2015 -
APR 1, 2015 -
AUG 19, 2014 The New York Times
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Awards & Honors
- Expertise
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Global Scholarship
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Research
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- Research
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Selected Grants
- Collaborative Research: Visual adaptations in hydrothermal vent shrimp and the role in feeding modalities and habitat selection awarded by National Science Foundation 2022 - 2025
- Magnetoreception in Marine Animals and Bio-Inspired Algorithms for Long-range, GPS-free Navigation awarded by University of North Carolina - Chapel Hill 2020 - 2023
- Persistent Aquatic Living Sensors Analysis and Support Services awarded by Northrop Grumman Corporation 2018 - 2023
- The International Human Frontier Science Program Organization awarded by International Human Frontier Science Program Organization 2018 - 2022
- Long-range Geomagnetic Navigation in Sea Turtles: An Interdisciplinary Approach to Localizing Magnetite-based Biological Magnetoreceptors awarded by University of North Carolina - Chapel Hill 2014 - 2020
- The Sigsbee Deep Expedition- Exploration of light in the water column below 1000m awarded by National Oceanic and Atmospheric Administration 2017 - 2020
- Cleaner Shrimp and Client Fish: Combining Phylogenetics and Visual Ecology to Understand the Evolution of Mutualistic Interactions awarded by National Geographic Society 2015 - 2016
- Bioluminescence in the Deep-sea Benthos II awarded by Nova Southeastern University 2015
- Dynamic Camouflage in Benthic and Pelagic Cephalopods: An interdisciplinary approach to crypsis based on color, reflection, and bioluminescence awarded by Office of Naval Research 2009 - 2015
- Collaborative Research: Midwater animal models: Optical measurement of metabolic transitions in transparent pelagic biota awarded by National Science Foundation 2009 - 2013
- Operation Deep-Scope 2007: Characterization of cliff ecosystems using new technologies awarded by National Oceanic and Atmospheric Administration 2007 - 2009
- Collaborative Research: Transparency: Ultrastructural and biochemical specialization in muscular and ocular tissues awarded by National Science Foundation 2005 - 2009
- Selective Invisibility Based on the Differing Temporal Resolutions of Sea Turtles and Billfish Under Low Light Conditions awarded by National Oceanic and Atmospheric Administration 2005 - 2006
- Mathematical Model of the Visual Abilities of Sea Turtles and Pelagic Fishes awarded by National Oceanic and Atmospheric Administration 2003
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External Relationships
- Dahlio Philanthropies
- Florida International University
- Netflix Inc
- zoological lighting institute
- Publications & Artistic Works
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Selected Publications
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Academic Articles
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Taboada, Carlos, Jesse Delia, Maomao Chen, Chenshuo Ma, Xiaorui Peng, Xiaoyi Zhu, Laiming Jiang, et al. “Glassfrogs conceal blood in their liver to maintain transparency.” Science (New York, N.Y.) 378, no. 6626 (December 2022): 1315–20. https://doi.org/10.1126/science.abl6620.Full Text
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Granger, Jesse, and Sönke Johnsen. “Collective movement as a solution to noisy navigation and its vulnerability to population loss.” Proceedings. Biological Sciences 289, no. 1987 (November 2022): 20221910. https://doi.org/10.1098/rspb.2022.1910.Full Text
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Cooke, Steven J., Jordanna N. Bergman, William M. Twardek, Morgan L. Piczak, Grace A. Casselberry, Keegan Lutek, Lotte S. Dahlmo, et al. “The movement ecology of fishes.” Journal of Fish Biology 101, no. 4 (October 2022): 756–79. https://doi.org/10.1111/jfb.15153.Full Text
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Notar, Julia C., Bernice Meja, and Sönke Johnsen. “Testing Mechanisms of Vision: Sea Urchin Spine Density Does Not Correlate With Vision-Related Environmental Characteristics.” Integrative and Comparative Biology, July 2022, icac119. https://doi.org/10.1093/icb/icac119.Full Text
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Davis, Alexander, Matthew N. Zipple, Danae Diaz, Susan Peters, Stephen Nowicki, and Sönke Johnsen. “Influence of visual background on discrimination of signal-relevant colours in zebra finches (Taeniopygia guttata).” Proceedings. Biological Sciences 289, no. 1976 (June 2022): 20220756. https://doi.org/10.1098/rspb.2022.0756.Full Text
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Johnsen, Sönke, and Steven H. D. Haddock. “Macropinna.” Current Biology : Cb 32, no. 6 (March 2022): R256–57. https://doi.org/10.1016/j.cub.2022.02.020.Full Text
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Green, P. A., E. M. George, K. A. Rosvall, S. Johnsen, and S. Nowicki. “Testosterone, signal coloration, and signal color perception in male zebra finch contests.” Ethology : Formerly Zeitschrift Fur Tierpsychologie 128, no. 2 (February 2022): 131–42. https://doi.org/10.1111/eth.13247.Full Text
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Granger, Jesse, Steven A. Cummer, Kenneth J. Lohmann, and Sönke Johnsen. “Environmental sources of radio frequency noise: potential impacts on magnetoreception.” Journal of Comparative Physiology. A, Neuroethology, Sensory, Neural, and Behavioral Physiology 208, no. 1 (January 2022): 83–95. https://doi.org/10.1007/s00359-021-01516-z.Full Text
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Johnsen, Sonke, and Steven H. D. Haddock. “Macropinna.” Current Biology 32, no. 6 (2022): R256–57.Open Access Copy Link to Item
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Wale, N., R. C. Fuller, S. Johnsen, M. L. Turrill, and M. A. Duffy. “The visual ecology of selective predation: Are unhealthy hosts less stealthy hosts?” Ecology and Evolution 11, no. 24 (December 1, 2021): 18591–603. https://doi.org/10.1002/ece3.8464.Full Text
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Robinson, N. J., S. Johnsen, A. Brooks, L. Frey, H. Judkins, M. Vecchione, and E. Widder. “Studying the swift, smart, and shy: Unobtrusive camera-platforms for observing large deep-sea squid.” Deep Sea Research Part I: Oceanographic Research Papers 172 (June 1, 2021). https://doi.org/10.1016/j.dsr.2021.103538.Full Text
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Caves, Eleanor M., and Sönke Johnsen. “The sensory impacts of climate change: bathymetric shifts and visually mediated interactions in aquatic species.” Proceedings. Biological Sciences 288, no. 1949 (April 2021): 20210396. https://doi.org/10.1098/rspb.2021.0396.Full Text
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Kingston, Alexandra C. N., Daniel R. Chappell, Loann Koch, Sönke Johnsen, and Daniel I. Speiser. “The orbital hoods of snapping shrimp have surface features that may represent tradeoffs between vision and protection.” Arthropod Structure & Development 61 (March 2021): 101025. https://doi.org/10.1016/j.asd.2020.101025.Full Text
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Caves, Eleanor M., Patrick A. Green, Matthew N. Zipple, Dhanya Bharath, Susan Peters, Sönke Johnsen, and Stephen Nowicki. “Comparison of Categorical Color Perception in Two Estrildid Finches.” The American Naturalist 197, no. 2 (February 2021): 190–202. https://doi.org/10.1086/712379.Full Text Open Access Copy
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Davis, Alexander L., Kate N. Thomas, Freya E. Goetz, Bruce H. Robison, Sönke Johnsen, and Karen J. Osborn. “Ultra-black Camouflage in Deep-Sea Fishes.” Current Biology : Cb 30, no. 17 (September 2020): 3470-3476.e3. https://doi.org/10.1016/j.cub.2020.06.044.Full Text
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Schweikert, Lorian E., Alexander L. Davis, Sönke Johnsen, and Heather D. Bracken-Grissom. “Visual perception of light organ patterns in deep-sea shrimps and implications for conspecific recognition.” Ecology and Evolution 10, no. 17 (September 2020): 9503–13. https://doi.org/10.1002/ece3.6643.Full Text
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Ernst, David A., Robert R. Fitak, Manfred Schmidt, Charles D. Derby, Sönke Johnsen, and Kenneth J. Lohmann. “Pulse magnetization elicits differential gene expression in the central nervous system of the Caribbean spiny lobster, Panulirus argus.” Journal of Comparative Physiology. A, Neuroethology, Sensory, Neural, and Behavioral Physiology 206, no. 5 (September 2020): 725–42. https://doi.org/10.1007/s00359-020-01433-7.Full Text
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Johnsen, Sönke, Kenneth J. Lohmann, and Eric J. Warrant. “Animal navigation: a noisy magnetic sense?” The Journal of Experimental Biology 223, no. Pt 18 (September 2020): jeb164921. https://doi.org/10.1242/jeb.164921.Full Text
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Taboada, Carlos, Andrés E. Brunetti, Mariana L. Lyra, Robert R. Fitak, Ana Faigón Soverna, Santiago R. Ron, María G. Lagorio, et al. “Multiple origins of green coloration in frogs mediated by a novel biliverdin-binding serpin.” Proceedings of the National Academy of Sciences of the United States of America 117, no. 31 (August 2020): 18574–81. https://doi.org/10.1073/pnas.2006771117.Full Text
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Caves, E. M., L. E. Schweikert, P. A. Green, M. N. Zipple, C. Taboada, S. Peters, S. Nowicki, and S. Johnsen. “Variation in carotenoid-containing retinal oil droplets correlates with variation in perception of carotenoid coloration.” Behavioral Ecology and Sociobiology 74, no. 7 (July 1, 2020). https://doi.org/10.1007/s00265-020-02874-5.Full Text Open Access Copy
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Davis, Alexander L., Tracey T. Sutton, William M. Kier, and Sönke Johnsen. “Evidence that eye-facing photophores serve as a reference for counterillumination in an order of deep-sea fishes.” Proceedings. Biological Sciences 287, no. 1928 (June 2020): 20192918. https://doi.org/10.1098/rspb.2019.2918.Full Text
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Fitak, Robert R., Benjamin R. Wheeler, and Sönke Johnsen. “Effect of a magnetic pulse on orientation behavior in rainbow trout (Oncorhynchus mykiss).” Behavioural Processes 172 (March 2020): 104058. https://doi.org/10.1016/j.beproc.2020.104058.Full Text
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Davis, Alexander L., H Frederik Nijhout, and Sönke Johnsen. “Diverse nanostructures underlie thin ultra-black scales in butterflies.” Nature Communications 11, no. 1 (March 2020): 1294. https://doi.org/10.1038/s41467-020-15033-1.Full Text
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Granger, Jesse, Lucianne Walkowicz, Robert Fitak, and Sönke Johnsen. “Gray whales strand more often on days with increased levels of atmospheric radio-frequency noise.” Current Biology : Cb 30, no. 4 (February 2020): R155–56. https://doi.org/10.1016/j.cub.2020.01.028.Full Text
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Costello, M Joseph, Kurt O. Gilliland, Ashik Mohamed, Kevin L. Schey, Sönke Johnsen, Lisa A. Brennan, and Marc Kantorow. “Novel mitochondrial derived Nuclear Excisosome degrades nuclei during differentiation of prosimian Galago (bush baby) monkey lenses.” Plos One 15, no. 11 (January 2020): e0241631. https://doi.org/10.1371/journal.pone.0241631.Full Text
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Johnsen, Sonke. “Development of Innovative Techniques for Exploring Novel Submarine Springs on the Gulf of Mexico Outer Continental Shelf.” Oceanography 33, no. 1 (2020): 96–96.Link to Item
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Johnsen, Sonke. “Journey into Midnight.” Oceanography 33, no. 1 (2020): 96–96.Link to Item
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Caves, Eleanor M., Stephen Nowicki, and Sönke Johnsen. “Von Uexküll Revisited: Addressing Human Biases in the Study of Animal Perception.” Integrative and Comparative Biology 59, no. 6 (December 2019): 1451–62. https://doi.org/10.1093/icb/icz073.Full Text
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Harris, Olivia K., Alexandra C. N. Kingston, Caitlin S. Wolfe, Soumitra Ghoshroy, Sönke Johnsen, and Daniel I. Speiser. “Core-shell nanospheres behind the blue eyes of the bay scallop Argopecten irradians.” Journal of the Royal Society, Interface 16, no. 159 (October 2019): 20190383. https://doi.org/10.1098/rsif.2019.0383.Full Text
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Caves, Eleanor M., Catherine Chen, and Sönke Johnsen. “The cleaner shrimp Lysmata amboinensis adjusts its behaviour towards predatory versus non-predatory clients.” Biology Letters 15, no. 9 (September 2019): 20190534. https://doi.org/10.1098/rsbl.2019.0534.Full Text
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Schweikert, Lorian E., Eleanor M. Caves, Sarah E. Solie, Tracey T. Sutton, and Sönke Johnsen. “Variation in rod spectral sensitivity of fishes is best predicted by habitat and depth.” Journal of Fish Biology 95, no. 1 (July 2019): 179–85. https://doi.org/10.1111/jfb.13859.Full Text
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Zipple, Matthew N., Eleanor M. Caves, Patrick A. Green, Susan Peters, Sönke Johnsen, and Stephen Nowicki. “Categorical colour perception occurs in both signalling and non-signalling colour ranges in a songbird.” Proceedings. Biological Sciences 286, no. 1903 (May 2019): 20190524. https://doi.org/10.1098/rspb.2019.0524.Full Text
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Ritschard, Elena A., Robert R. Fitak, Oleg Simakov, and Sönke Johnsen. “Genomic signatures of G-protein-coupled receptor expansions reveal functional transitions in the evolution of cephalopod signal transduction.” Proceedings. Biological Sciences 286, no. 1897 (February 2019): 20182929. https://doi.org/10.1098/rspb.2018.2929.Full Text
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Marshall, N Justin, Samuel B. Powell, Thomas W. Cronin, Roy L. Caldwell, Sonke Johnsen, Viktor Gruev, T-H Short Chiou, Nicholas W. Roberts, and Martin J. How. “Polarisation signals: a new currency for communication.” The Journal of Experimental Biology 222, no. Pt 3 (February 2019): jeb134213. https://doi.org/10.1242/jeb.134213.Full Text
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Foster, James J., John D. Kirwan, Basil El Jundi, Jochen Smolka, Lana Khaldy, Emily Baird, Marcus J. Byrne, Dan-Eric Nilsson, Sönke Johnsen, and Marie Dacke. “Orienting to polarized light at night - matching lunar skylight to performance in a nocturnal beetle.” The Journal of Experimental Biology 222, no. Pt 2 (January 2019): jeb188532. https://doi.org/10.1242/jeb.188532.Full Text
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Schweikert, Lorian E., Robert R. Fitak, Eleanor M. Caves, Tracey T. Sutton, and Sönke Johnsen. “Spectral sensitivity in ray-finned fishes: diversity, ecology and shared descent.” The Journal of Experimental Biology 221, no. Pt 23 (November 2018): jeb189761. https://doi.org/10.1242/jeb.189761.Full Text
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Eisthen, Heather L., Kenneth M. Halanych, Darcy B. Kelley, Stephanie A. White, Steven M. Phelps, and Steven M. 66 additional authors. “New NSF policy will stifle innovation.” Science (New York, N.Y.) 362, no. 6412 (October 2018): 297–98. https://doi.org/10.1126/science.aav4793.Full Text
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Fitak, R. R., E. M. Caves, and S. Johnsen. “Orientation in Pill Bugs: An Interdisciplinary Activity to Engage Students in Concepts of Biology, Physics & Circular Statistics.” American Biology Teacher 80, no. 8 (October 1, 2018): 608–18. https://doi.org/10.1525/abt.2018.80.8.608.Full Text
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Caves, Eleanor M., Patrick A. Green, Matthew N. Zipple, Susan Peters, Sönke Johnsen, and Stephen Nowicki. “Categorical perception of colour signals in a songbird.” Nature 560, no. 7718 (August 2018): 365–67. https://doi.org/10.1038/s41586-018-0377-7.Full Text
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Dreyer, David, Barrie Frost, Henrik Mouritsen, Anja Günther, Ken Green, Mary Whitehouse, Sönke Johnsen, Stanley Heinze, and Eric Warrant. “The Earth's Magnetic Field and Visual Landmarks Steer Migratory Flight Behavior in the Nocturnal Australian Bogong Moth.” Current Biology : Cb 28, no. 13 (July 2018): 2160-2166.e5. https://doi.org/10.1016/j.cub.2018.05.030.Full Text
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Fitak, R. R., and S. Johnsen. “Green sea turtle (Chelonia mydas) population history indicates important demographic changes near the mid-Pleistocene transition.” Marine Biology 165, no. 7 (July 1, 2018). https://doi.org/10.1007/s00227-018-3366-3.Full Text
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Caves, Eleanor M., Patrick A. Green, and Sönke Johnsen. “Mutual visual signalling between the cleaner shrimp Ancylomenes pedersoni and its client fish.” Proceedings. Biological Sciences 285, no. 1881 (June 2018): 20180800. https://doi.org/10.1098/rspb.2018.0800.Full Text
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Fitak, Robert R., Lorian E. Schweikert, Benjamin R. Wheeler, David A. Ernst, Kenneth J. Lohmann, and Sönke Johnsen. “Near absence of differential gene expression in the retina of rainbow trout after exposure to a magnetic pulse: implications for magnetoreception.” Biology Letters 14, no. 6 (June 2018): 20180209. https://doi.org/10.1098/rsbl.2018.0209.Full Text
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Arniella, M. B., R. R. Fitak, and S. Johnsen. “Unmapped sequencing reads identify additional candidate genes linked to magnetoreception in rainbow trout.” Environmental Biology of Fishes 101, no. 5 (May 1, 2018): 711–21. https://doi.org/10.1007/s10641-018-0731-5.Full Text
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Caves, Eleanor M., Nicholas C. Brandley, and Sönke Johnsen. “Visual Acuity and the Evolution of Signals.” Trends in Ecology & Evolution 33, no. 5 (May 2018): 358–72. https://doi.org/10.1016/j.tree.2018.03.001.Full Text
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Schweikert, Lorian E., Robert R. Fitak, and Sönke Johnsen. “De novo transcriptomics reveal distinct phototransduction signaling components in the retina and skin of a color-changing vertebrate, the hogfish (Lachnolaimus maximus).” Journal of Comparative Physiology. A, Neuroethology, Sensory, Neural, and Behavioral Physiology 204, no. 5 (May 2018): 475–85. https://doi.org/10.1007/s00359-018-1254-4.Full Text
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Caves, E. M., and S. Johnsen. “AcuityView: An r package for portraying the effects of visual acuity on scenes observed by an animal.” Methods in Ecology and Evolution 9, no. 3 (March 1, 2018): 793–97. https://doi.org/10.1111/2041-210X.12911.Full Text
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Bracken-Grissom, H., E. Widder, S. Johnsen, C. Messing, and T. Frank. “Decapod diversity associated with deep-sea octocorals in the Gulf of Mexico.” Crustaceana 91, no. 10 (January 1, 2018): 1267–75. https://doi.org/10.1163/15685403-00003829.Full Text
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Haddock, S. H. D., L. M. Christianson, W. R. Francis, S. Martini, C. W. Dunn, P. R. Pugh, C. E. Mills, et al. “Insights into the biodiversity, behavior, and bioluminescence of deep-sea organisms using molecular and maritime technology.” Oceanography 30, no. 4 (December 1, 2017): 38–47. https://doi.org/10.5670/OCEANOG.2017.422.Full Text
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Bagge, Laura E., Stephen T. Kinsey, Justin Gladman, and Sönke Johnsen. “Transparent anemone shrimp (Ancylomenes pedersoni) become opaque after exercise and physiological stress in correlation with increased hemolymph perfusion.” The Journal of Experimental Biology 220, no. Pt 22 (November 2017): 4225–33. https://doi.org/10.1242/jeb.162362.Full Text
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Fitak, Robert R., and Sönke Johnsen. “Bringing the analysis of animal orientation data full circle: model-based approaches with maximum likelihood.” The Journal of Experimental Biology 220, no. Pt 21 (November 2017): 3878–82. https://doi.org/10.1242/jeb.167056.Full Text
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Marshall, Justin, and Sonke Johnsen. “Fluorescence as a means of colour signal enhancement.” Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 372, no. 1724 (July 2017): 20160335. https://doi.org/10.1098/rstb.2016.0335.Full Text
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Caves, Eleanor M., Tracey T. Sutton, and Sönke Johnsen. “Visual acuity in ray-finned fishes correlates with eye size and habitat.” The Journal of Experimental Biology 220, no. Pt 9 (May 2017): 1586–96. https://doi.org/10.1242/jeb.151183.Full Text Open Access Copy
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Johnsen, Sönke. “Open Questions: We don't really know anything, do we? Open questions in sensory biology.” Bmc Biology 15, no. 1 (May 2017): 43. https://doi.org/10.1186/s12915-017-0385-3.Full Text
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Taylor, Brian K., Sönke Johnsen, and Kenneth J. Lohmann. “Detection of magnetic field properties using distributed sensing: a computational neuroscience approach.” Bioinspiration & Biomimetics 12, no. 3 (May 2017): 036013. https://doi.org/10.1088/1748-3190/aa6ccd.Full Text
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Cronin, Thomas W., Jeffry I. Fasick, Lorian E. Schweikert, Sönke Johnsen, Lorren J. Kezmoh, and Mark F. Baumgartner. “Coping with copepods: do right whales (Eubalaena glacialis) forage visually in dark waters?” Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 372, no. 1717 (April 2017): 20160067. https://doi.org/10.1098/rstb.2016.0067.Full Text
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Fitak, Robert R., Benjamin R. Wheeler, David A. Ernst, Kenneth J. Lohmann, and Sönke Johnsen. “Candidate genes mediating magnetoreception in rainbow trout (Oncorhynchus mykiss).” Biology Letters 13, no. 4 (April 2017): 20170142. https://doi.org/10.1098/rsbl.2017.0142.Full Text
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Thomas, Kate N., Bruce H. Robison, and Sönke Johnsen. “Two eyes for two purposes: in situ evidence for asymmetric vision in the cockeyed squids Histioteuthis heteropsis and Stigmatoteuthis dofleini.” Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 372, no. 1717 (April 2017): 20160069. https://doi.org/10.1098/rstb.2016.0069.Full Text
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Tedore, Cynthia, and Sönke Johnsen. “Using RGB displays to portray color realistic imagery to animal eyes.” Current Zoology 63, no. 1 (February 2017): 27–34. https://doi.org/10.1093/cz/zow076.Full Text
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Bagge, Laura E., Karen J. Osborn, and Sönke Johnsen. “Nanostructures and Monolayers of Spheres Reduce Surface Reflections in Hyperiid Amphipods.” Current Biology : Cb 26, no. 22 (November 2016): 3071–76. https://doi.org/10.1016/j.cub.2016.09.033.Full Text
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Cronin, Thomas W., and Sönke Johnsen. “Extraocular, Non-Visual, and Simple Photoreceptors: An Introduction to the Symposium.” Integrative and Comparative Biology 56, no. 5 (November 2016): 758–63. https://doi.org/10.1093/icb/icw106.Full Text
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Speiser, Daniel I., Yakir Luc Gagnon, Raghav K. Chhetri, Amy L. Oldenburg, and Sönke Johnsen. “Examining the Effects of Chromatic Aberration, Object Distance, and Eye Shape on Image-Formation in the Mirror-Based Eyes of the Bay Scallop Argopecten irradians.” Integrative and Comparative Biology 56, no. 5 (November 2016): 796–808. https://doi.org/10.1093/icb/icw099.Full Text
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Ruxton, Graeme D., and Sönke Johnsen. “The effect of aggregation on visibility in open water.” Proceedings. Biological Sciences 283, no. 1839 (September 2016): 20161463. https://doi.org/10.1098/rspb.2016.1463.Full Text
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Cronin, Thomas W., Yakir Luc Gagnon, Sönke Johnsen, N Justin Marshall, and Nicholas W. Roberts. “Comment on "Open-ocean fish reveal an omnidirectional solution to camouflage in polarized environments".” Science (New York, N.Y.) 353, no. 6299 (August 2016): 552. https://doi.org/10.1126/science.aaf4481.Full Text
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Johnsen, Sönke, Yakir L. Gagnon, N Justin Marshall, Thomas W. Cronin, Viktor Gruev, and Samuel Powell. “Polarization vision seldom increases the sighting distance of silvery fish.” Current Biology : Cb 26, no. 16 (August 2016): R752–54. https://doi.org/10.1016/j.cub.2016.07.030.Full Text
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Tedore, Cynthia, and Sönke Johnsen. “Disentangling the visual cues used by a jumping spider to locate its microhabitat.” The Journal of Experimental Biology 219, no. Pt 15 (August 2016): 2396–2401. https://doi.org/10.1242/jeb.129122.Full Text
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Wilkins, Lucas, N Justin Marshall, Sönke Johnsen, and D. Osorio. “Modelling colour constancy in fish: implications for vision and signalling in water.” The Journal of Experimental Biology 219, no. Pt 12 (June 2016): 1884–92. https://doi.org/10.1242/jeb.139147.Full Text
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Johnsen, Sönke. “How to measure color using spectrometers and calibrated photographs.” The Journal of Experimental Biology 219, no. Pt 6 (March 2016): 772–78. https://doi.org/10.1242/jeb.124008.Full Text
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Zylinski, Sarah, D. Osorio, and Sonke Johnsen. “Cuttlefish see shape from shading, fine-tuning coloration in response to pictorial depth cues and directional illumination.” Proceedings. Biological Sciences 283, no. 1826 (March 2016): 20160062. https://doi.org/10.1098/rspb.2016.0062.Full Text
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Caves, Eleanor M., Tamara M. Frank, and Sönke Johnsen. “Spectral sensitivity, spatial resolution and temporal resolution and their implications for conspecific signalling in cleaner shrimp.” The Journal of Experimental Biology 219, no. Pt 4 (February 2016): 597–608. https://doi.org/10.1242/jeb.122275.Full Text Open Access Copy
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Brandley, N., M. Johnson, and S. Johnsen. “Aposematic signals in North American black widows are more conspicuous to predators than to prey.” Behavioral Ecology 27, no. 4 (January 1, 2016): 1104–12. https://doi.org/10.1093/beheco/arw014.Full Text
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Costello, M Joseph, Lisa A. Brennan, Ashik Mohamed, Kurt O. Gilliland, Sönke Johnsen, and Marc Kantorow. “Identification and Ultrastructural Characterization of a Novel Nuclear Degradation Complex in Differentiating Lens Fiber Cells.” Plos One 11, no. 8 (2016): e0160785. https://doi.org/10.1371/journal.pone.0160785.Full Text Link to Item
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Bedore, Christine N., Stephen M. Kajiura, and Sönke Johnsen. “Freezing behaviour facilitates bioelectric crypsis in cuttlefish faced with predation risk.” Proceedings. Biological Sciences 282, no. 1820 (December 2015): 20151886. https://doi.org/10.1098/rspb.2015.1886.Full Text Open Access Copy
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Tedore, C., and S. Johnsen. “Immunological dependence of plant-dwelling animals on the medicinal properties of their plant substrates: a preliminary test of a novel evolutionary hypothesis.” Arthropod Plant Interactions 9, no. 5 (October 14, 2015): 437–46. https://doi.org/10.1007/s11829-015-9386-8.Full Text
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Gagnon, Y. L., T. T. Sutton, and S. Johnsen. “Corrigendum to "Visual acuity in pelagic fishes and mollusks" [Vis. Res. 92 (2013) 1-9] doi:10.1016/j.visres.2013.08.007.” Vision Research 115 (October 1, 2015): 155–56. https://doi.org/10.1016/j.visres.2015.07.001.Full Text
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Tedore, C., and S. Johnsen. “Visual mutual assessment of size in male Lyssomanes viridis jumping spider contests.” Behavioral Ecology 26, no. 2 (February 11, 2015): 510–18. https://doi.org/10.1093/beheco/aru222.Full Text
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Baldwin Fergus, Jamie L., Sönke Johnsen, and Karen J. Osborn. “A unique apposition compound eye in the mesopelagic hyperiid amphipod Paraphronima gracilis.” Current Biology : Cb 25, no. 4 (February 2015): 473–78. https://doi.org/10.1016/j.cub.2014.12.010.Full Text
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Palmer, Glenn, and Sönke Johnsen. “Downwelling spectral irradiance during evening twilight as a function of the lunar phase.” Applied Optics 54, no. 4 (February 2015): B85–92. https://doi.org/10.1364/ao.54.000b85.Full Text
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Taniguchi, Darcy A. A., Yakir Gagnon, Benjamin R. Wheeler, Sönke Johnsen, and Jules S. Jaffe. “Cuttlefish Sepia officinalis Preferentially Respond to Bottom Rather than Side Stimuli When Not Allowed Adjacent to Tank Walls.” Plos One 10, no. 10 (January 2015): e0138690. https://doi.org/10.1371/journal.pone.0138690.Full Text
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Dougherty, Lindsey F., Sönke Johnsen, Roy L. Caldwell, and N Justin Marshall. “A dynamic broadband reflector built from microscopic silica spheres in the 'disco' clam Ctenoides ales.” Journal of the Royal Society, Interface 11, no. 98 (September 2014): 20140407. https://doi.org/10.1098/rsif.2014.0407.Full Text
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Muchhala, Nathan, Sönke Johnsen, and Stacey Dewitt Smith. “Competition for hummingbird pollination shapes flower color variation in Andean solanaceae.” Evolution; International Journal of Organic Evolution 68, no. 8 (August 2014): 2275–86. https://doi.org/10.1111/evo.12441.Full Text
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Gagnon, Yakir Luc, Daniel I. Speiser, and Sönke Johnsen. “Simplifying numerical ray tracing for characterization of optical systems.” Applied Optics 53, no. 21 (July 2014): 4784–90. https://doi.org/10.1364/ao.53.004784.Full Text
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Akre, Karin L., and Sönke Johnsen. “Psychophysics and the evolution of behavior.” Trends in Ecology & Evolution 29, no. 5 (May 2014): 291–300. https://doi.org/10.1016/j.tree.2014.03.007.Full Text
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Johnsen, S., E. Gassmann, R. A. Reynolds, D. Stramski, and C. Mobley. “The asymmetry of the underwater horizontal light field and its implications for mirror-based camouflage in silvery pelagic fish.” Limnology and Oceanography 59, no. 6 (January 1, 2014): 1839–52. https://doi.org/10.4319/lo.2014.59.6.1839.Full Text
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Johnsen, Sönke. “Hide and seek in the open sea: pelagic camouflage and visual countermeasures.” Annual Review of Marine Science 6 (January 2014): 369–92. https://doi.org/10.1146/annurev-marine-010213-135018.Full Text
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Nilsson, Dan-E, Eric Warrant, and Sönke Johnsen. “Computational visual ecology in the pelagic realm.” Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 369, no. 1636 (January 2014): 20130038. https://doi.org/10.1098/rstb.2013.0038.Full Text
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Brandley, N. C., D. I. Speiser, and S. Johnsen. “Eavesdropping on visual secrets.” Evolutionary Ecology 27, no. 6 (November 1, 2013): 1045–68. https://doi.org/10.1007/s10682-013-9656-9.Full Text
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Costello, M Joseph, Lisa A. Brennan, Subharsee Basu, Daniel Chauss, Ashik Mohamed, Kurt O. Gilliland, Sönke Johnsen, Sue Menko, and Marc Kantorow. “Autophagy and mitophagy participate in ocular lens organelle degradation.” Exp Eye Res 116 (November 2013): 141–50. https://doi.org/10.1016/j.exer.2013.08.017.Full Text Link to Item
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Gagnon, Yakir L., Tracey T. Sutton, and Sönke Johnsen. “Visual acuity in pelagic fishes and mollusks.” Vision Research 92 (November 2013): 1–9. https://doi.org/10.1016/j.visres.2013.08.007.Full Text
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Warrant, Eric J., and Sönke Johnsen. “Vision and the light environment.” Current Biology : Cb 23, no. 22 (November 2013): R990–94. https://doi.org/10.1016/j.cub.2013.10.019.Full Text
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Costello, M Joseph, Ashik Mohamed, Kurt O. Gilliland, W Craig Fowler, and Sönke Johnsen. “Ultrastructural analysis of the human lens fiber cell remodeling zone and the initiation of cellular compaction.” Exp Eye Res 116 (November 2013): 411–18. https://doi.org/10.1016/j.exer.2013.10.015.Full Text Link to Item
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Nilsson, Dan-E, Eric J. Warrant, Sönke Johnsen, Roger T. Hanlon, and Nadav Shashar. “The giant eyes of giant squid are indeed unexpectedly large, but not if used for spotting sperm whales.” Bmc Evolutionary Biology 13 (September 2013): 187. https://doi.org/10.1186/1471-2148-13-187.Full Text
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Tedore, Cynthia, and Sönke Johnsen. “Pheromones exert top-down effects on visual recognition in the jumping spider Lyssomanes viridis.” The Journal of Experimental Biology 216, no. Pt 9 (May 2013): 1744–56. https://doi.org/10.1242/jeb.071118.Full Text
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Mohamed, Ashik, Kurt O. Gilliland, Sangeetha Metlapally, Sönke Johnsen, and M Joseph Costello. “Simple fixation and storage protocol for preserving the internal structure of intact human donor lenses and extracted human nuclear cataract specimens.” Mol Vis 19 (2013): 2352–59.Link to Item
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Frank, Tamara M., Sönke Johnsen, and Thomas W. Cronin. “Light and vision in the deep-sea benthos: II. Vision in deep-sea crustaceans.” The Journal of Experimental Biology 215, no. Pt 19 (October 2012): 3344–53. https://doi.org/10.1242/jeb.072033.Full Text
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Johnsen, Sönke, Tamara M. Frank, Steven H. D. Haddock, Edith A. Widder, and Charles G. Messing. “Light and vision in the deep-sea benthos: I. Bioluminescence at 500-1000 m depth in the Bahamian islands.” The Journal of Experimental Biology 215, no. Pt 19 (October 2012): 3335–43. https://doi.org/10.1242/jeb.072009.Full Text
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Costello, M Joseph, Alain Burette, Mariko Weber, Sangeetha Metlapally, Kurt O. Gilliland, W Craig Fowler, Ashik Mohamed, and Sönke Johnsen. “Electron tomography of fiber cell cytoplasm and dense cores of multilamellar bodies from human age-related nuclear cataracts.” Exp Eye Res 101 (August 2012): 72–81. https://doi.org/10.1016/j.exer.2012.06.005.Full Text Link to Item
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Baldwin, Jamie, and Sönke Johnsen. “The male blue crab, Callinectes sapidus, uses both chromatic and achromatic cues during mate choice.” The Journal of Experimental Biology 215, no. Pt 7 (April 2012): 1184–91. https://doi.org/10.1242/jeb.067512.Full Text
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Nilsson, Dan-Eric, Eric J. Warrant, Sönke Johnsen, Roger Hanlon, and Nadav Shashar. “A unique advantage for giant eyes in giant squid.” Current Biology : Cb 22, no. 8 (April 2012): 683–88. https://doi.org/10.1016/j.cub.2012.02.031.Full Text
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Holt, A. L., A. M. Sweeney, S. Johnsen, and D. E. Morse. “Erratum: A highly distributed Bragg stack with unique geometry provides effective camouflage for Loliginid squid eyes (Journal of the Royal Society Interface (2011) 8, (1386-1399) DOI: 10.1098/rsif.2010.0702).” Journal of the Royal Society Interface 9, no. 68 (March 7, 2012): 600. https://doi.org/10.1098/rsif.2011.0811.Full Text
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Tedore, Cynthia, and Sönke Johnsen. “Weaponry, color, and contest success in the jumping spider Lyssomanes viridis.” Behavioural Processes 89, no. 3 (March 2012): 203–11. https://doi.org/10.1016/j.beproc.2011.10.017.Full Text
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Johnsen, S. “The optics of life: A biologist's guide to light in nature.” The Optics of Life: A Biologist’S Guide to Light in Nature, January 19, 2012.
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Brandley, N. C., and S. Johnsen. “Eavesdropping on visual secrets (Submitted).” Evolutionary Ecology, 2012.
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Costello, M. J., D. Chauss, A. Mohamed, K. O. Gilliland, S. Johnsen, M. Bates, L. A. Brennan, and M. Kantorow. “Autophagy and Mitophagy in the Ocular Lens (Submitted).” Journal of Cell Science, 2012.
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Johnsen, Sönke. “Anything that involves a photon and an animal.” Current Biology : Cb 22, no. 1 (January 2012): R6–7. https://doi.org/10.1016/j.cub.2011.11.035.Full Text
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Moore, B. A., J. M. Kamilar, S. P. Collin, O. R. P. Bininda Emonds, N. J. Dominy, M. I. Hall, C. P. Heesy, et al. “A novel method for comparative analysis of retinal specialization traits from topographic maps.” Journal of Vision 12, no. 1–24 (2012).
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Moore, B. A., J. M. Kamilar, S. P. Collin, O. R. P. Bininda Emonds, N. J. Dominy, M. I. Hall, C. P. Heesy, et al. “Are all vertebrate retinas configured the same? Implications for the evolution of acute vision. (Submitted)” Proceedings of the Royal Society of London, Series B, 2012.
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Moore, Bret A., Jason M. Kamilar, Shaun P. Collin, Olaf R. P. Bininda-Emonds, Nathaniel J. Dominy, Margaret I. Hall, Christopher P. Heesy, et al. “A novel method for comparative analysis of retinal specialization traits from topographic maps.” Journal of Vision 12, no. 12 (January 2012): 13. https://doi.org/10.1167/12.12.13.Full Text
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Frank, T. M., and S. Johnsen. “Light and vision in the deep-sea benthos. II. Special visual adaptations in deep-sea benthic crustaceans.” Journal of Experimental Biology 215 (2012): 3344–53.
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Zylinski, Sarah, and Sönke Johnsen. “Mesopelagic cephalopods switch between transparency and pigmentation to optimize camouflage in the deep.” Current Biology : Cb 21, no. 22 (November 2011): 1937–41. https://doi.org/10.1016/j.cub.2011.10.014.Full Text
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Holt, Amanda L., Alison M. Sweeney, Sönke Johnsen, and Daniel E. Morse. “A highly distributed Bragg stack with unique geometry provides effective camouflage for Loliginid squid eyes.” Journal of the Royal Society, Interface 8, no. 63 (October 2011): 1386–99. https://doi.org/10.1098/rsif.2010.0702.Full Text
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Baldwin, Jamie, and Sönke Johnsen. “Effects of molting on the visual acuity of the blue crab, Callinectes sapidus.” The Journal of Experimental Biology 214, no. Pt 18 (September 2011): 3055–61. https://doi.org/10.1242/jeb.056861.Full Text
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Jackson, Emily, and Sönke Johnsen. “Orientation to Objects in the Sea Urchin Strongylocentrotus purpuratus depends on apparent and not actual object size.” The Biological Bulletin 220, no. 2 (April 2011): 86–88. https://doi.org/10.1086/bblv220n2p86.Full Text
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Speiser, Daniel I., Douglas J. Eernisse, and Sönke Johnsen. “A chiton uses aragonite lenses to form images.” Current Biology : Cb 21, no. 8 (April 2011): 665–70. https://doi.org/10.1016/j.cub.2011.03.033.Full Text
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Bhandiwad, Ashwin, and Sönke Johnsen. “The effects of salinity and temperature on the transparency of the grass shrimp Palaemonetes pugio.” The Journal of Experimental Biology 214, no. Pt 5 (March 2011): 709–16. https://doi.org/10.1242/jeb.049296.Full Text
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Johnsen, Sönke, N Justin Marshall, and Edith A. Widder. “Polarization sensitivity as a contrast enhancer in pelagic predators: lessons from in situ polarization imaging of transparent zooplankton.” Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 366, no. 1565 (March 2011): 655–70. https://doi.org/10.1098/rstb.2010.0193.Full Text
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Shashar, Nadav, Sönke Johnsen, Amit Lerner, Shai Sabbah, Chuan-Chin Chiao, Lydia M. Mäthger, and Roger T. Hanlon. “Underwater linear polarization: physical limitations to biological functions.” Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 366, no. 1565 (March 2011): 649–54. https://doi.org/10.1098/rstb.2010.0190.Full Text
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Sweeney, Alison M., Charles A. Boch, Sonke Johnsen, and Daniel E. Morse. “Twilight spectral dynamics and the coral reef invertebrate spawning response.” The Journal of Experimental Biology 214, no. Pt 5 (March 2011): 770–77. https://doi.org/10.1242/jeb.043406.Full Text
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Speiser, Daniel I., Ellis R. Loew, and Sönke Johnsen. “Spectral sensitivity of the concave mirror eyes of scallops: potential influences of habitat, self-screening and longitudinal chromatic aberration.” The Journal of Experimental Biology 214, no. Pt 3 (February 2011): 422–31. https://doi.org/10.1242/jeb.048108.Full Text
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Speiser, D. I., D. Eernisse, and S. Johnsen. “Chitons eye have calcitic lenses and provide spatial vision.” Current Biology 21 (2011): 665–70.
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Tedore, C. A., and S. Johnsen. “The function of male-male threat displays in the jumping spider Lyssomanes viridis.” Behavioural Processes (Online for Now), 2011.
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Jaffe, J. S., F. Simonet, B. Laxton, P. L. D. Roberts, S. Zylinski, S. Johnsen, and A. M. Sweeney. “Omni-Cam and the Sub Sea Holodeck: Systems for recording in-situ radiance and simulating underwater optical environments in the lab (Submitted).” Marine Technology Society Journal, 2011.
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Speiser, D. I., E. R. Loew, and S. Johnsen. “Spectral sensitivity of the concave mirror eyes of scallops: The influence of habitat and longitudinal chromatic aberration.” Journal of Experimental Biology 214 (2011): 422–31.
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Costello, M Joseph, Sönke Johnsen, Sangeetha Metlapally, Kurt O. Gilliland, Lesley Frame, and Dorairajan Balasubramanian. “Multilamellar spherical particles as potential sources of excessive light scattering in human age-related nuclear cataracts.” Exp Eye Res 91, no. 6 (December 2010): 881–89. https://doi.org/10.1016/j.exer.2010.09.013.Full Text Link to Item
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Yerramilli, D., and S. Johnsen. “Spatial vision in the purple sea urchin Strongylocentrotus purpuratus (Echinoidea).” The Journal of Experimental Biology 213, no. 2 (January 2010): 249–55. https://doi.org/10.1242/jeb.033159.Full Text Open Access Copy
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Baldwin, Jamie, and Sönke Johnsen. “The importance of color in mate choice of the blue crab Callinectes sapidus.” The Journal of Experimental Biology 212, no. Pt 22 (November 2009): 3762–68. https://doi.org/10.1242/jeb.028027.Full Text
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Johnsen, Sönke, and Kenneth J. Lohmann. “An inner ear magneto-receptor?” Physics Today 62, no. 2 (February 2009): 14–14. https://doi.org/10.1063/1.4797051.Full Text
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Marlow, H., D. I. Speiser, D. Matus, S. Johnsen, E. C. Seaver, and M. Q. Martindale. “The evolution of a complex trait: Photoreception in the Metazoa (In preparation).” Nature, 2009.
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Speiser, D. I., and S. Johnsen. “Comparative morphology of the concave mirror eyes of scallops (Pectinoidea).” American Malacological Bulletin 26, no. 1–2 (December 29, 2008): 27–33. https://doi.org/10.4003/006.026.0204.Full Text
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Matz, Mikhail V., Tamara M. Frank, N Justin Marshall, Edith A. Widder, and Sönke Johnsen. “Giant deep-sea protist produces bilaterian-like traces.” Current Biology : Cb 18, no. 23 (December 2008): 1849–54. https://doi.org/10.1016/j.cub.2008.10.028.Full Text
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Costello, M. J., Sönke Johnsen, Sangeetha Metlapally, Kurt O. Gilliland, Balasubramanya Ramamurthy, Pravin V. Krishna, and Dorairajan Balasubramanian. “Ultrastructural analysis of damage to nuclear fiber cell membranes in advanced age-related cataracts from India.” Exp Eye Res 87, no. 2 (August 2008): 147–58. https://doi.org/10.1016/j.exer.2008.05.009.Full Text Link to Item
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Speiser, Daniel I., and Sönke Johnsen. “Scallops visually respond to the size and speed of virtual particles.” The Journal of Experimental Biology 211, no. Pt 13 (July 2008): 2066–70. https://doi.org/10.1242/jeb.017038.Full Text
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Sweeney, A. M., S. H. D. Haddock, and S. Johnsen. “Comparative visual acuity of coleoid cephalopods (Integrative and Comparative Biology 47, 6, (808-814) DOI: 10.1093/icb/icm092).” Integrative and Comparative Biology 48, no. 1 (July 1, 2008): 158. https://doi.org/10.1093/icb/icn002.Full Text
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Gilliland, Kurt O., Sonke Johnsen, Sangeetha Metlapally, M Joseph Costello, Balasubramanya Ramamurthy, Pravin V. Krishna, and Dorairajan Balasubramanian. “Mie light scattering calculations for an Indian age-related nuclear cataract with a high density of multilamellar bodies.” Mol Vis 14 (March 24, 2008): 572–82.Link to Item
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Johnsen, S., and K. J. Lohmann. “Magnetoreception in animals.” Physics Today 61, no. 3 (March 11, 2008): 29–35. https://doi.org/10.1063/1.2897947.Full Text
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Metlapally, S., M. J. Costello, K. O. Gilliland, B. Ramamurthy, P. V. Krishna, D. Balasubramanian, and S. Johnsen. “Analysis of nuclear fiber cell cytoplasmic texture in advanced cataractous lenses from Indian subjects using Debye-Bueche theory.” Exp Eye Res 86, no. 2 (February 2008): 434–44. https://doi.org/10.1016/j.exer.2007.11.018.Full Text Link to Item
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Gilliland, K. O., S. Johnsen, S. Metlapally, M. J. Costello, B. Ramamurthy, P. V. Krishna, and D. Balasubramanian. “Mie Light Scattering Calculations for Multilamellar Bodies in Indian Age-Related Nuclear Cataracts.” Molecular Vision 14 (2008): 572–82.
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Johnsen, Sönke. “Does new technology inspire new directions? Examples drawn from pelagic visual ecology.” Integrative and Comparative Biology 47, no. 6 (December 2007): 799–807. https://doi.org/10.1093/icb/icm017.Full Text
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Sweeney, Alison M., Steven H. D. Haddock, and Sönke Johnsen. “Comparative visual acuity of coleoid cephalopods.” Integrative and Comparative Biology 47, no. 6 (December 2007): 808–14. https://doi.org/10.1093/icb/icm092.Full Text
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Gagnon, Y. L., N. Shashar, E. J. Warrant, and S. J. Johnsen. “Light scattering by selected zooplankton from the Gulf of Aqaba.” The Journal of Experimental Biology 210, no. Pt 21 (November 2007): 3728–35. https://doi.org/10.1242/jeb.003251.Full Text
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Martin, C. H., and S. Johnsen. “A field test of the Hamilton-Zuk hypothesis in the Trinidadian guppy (Poecilia reticulata).” Behavioral Ecology and Sociobiology 61, no. 12 (October 1, 2007): 1897–1909. https://doi.org/10.1007/s00265-007-0430-2.Full Text
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Johnsen, Sönke, Erin Mattern, and Thorsten Ritz. “Light-dependent magnetoreception: quantum catches and opponency mechanisms of possible photosensitive molecules.” The Journal of Experimental Biology 210, no. Pt 18 (September 2007): 3171–78. https://doi.org/10.1242/jeb.007567.Full Text
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Sweeney, Alison M., David L. Des Marais, Yih-En Andrew Ban, and Sönke Johnsen. “Evolution of graded refractive index in squid lenses.” Journal of the Royal Society, Interface 4, no. 15 (August 2007): 685–98. https://doi.org/10.1098/rsif.2006.0210.Full Text
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Costello, M Joseph, Sönke Johnsen, Kurt O. Gilliland, Christopher D. Freel, and W Craig Fowler. “Predicted light scattering from particles observed in human age-related nuclear cataracts using mie scattering theory.” Invest Ophthalmol Vis Sci 48, no. 1 (January 2007): 303–12. https://doi.org/10.1167/iovs.06-0480.Full Text Link to Item
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Sweeney, A., S. H. D. Haddock, and S. Johnsen. “Comparative visual acuity of coleoid cephalopods.” Integrative and Comparative Biology 47, no. 808–814 (2007).
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Gagnon, Y. L., N. Shashar, E. J. Warrant, and S. Johnsen. “Light scattering from pelagic zooplankton: measurements at different angles and modeling corresponding sighting distances.” Journal of Experimental Biology 210 (2007): 3728–35.
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Leech, D. M., and S. Johnsen. “Ultraviolet vision and foraging in juvenile bluegill (Lepomis macrochirus).” Canadian Journal of Fisheries and Aquatic Sciences 63, no. 10 (October 1, 2006): 2183–90. https://doi.org/10.1139/F06-107.Full Text
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Tuthill, John C., and Sönke Johnsen. “Polarization sensitivity in the red swamp crayfish Procambarus clarkii enhances the detection of moving transparent objects.” The Journal of Experimental Biology 209, no. Pt 9 (May 2006): 1612–16. https://doi.org/10.1242/jeb.02196.Full Text
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Johnsen, Sönke, Almut Kelber, Eric Warrant, Alison M. Sweeney, Edith A. Widder, Raymond L. Lee, and Javier Hernández-Andrés. “Crepuscular and nocturnal illumination and its effects on color perception by the nocturnal hawkmoth Deilephila elpenor.” The Journal of Experimental Biology 209, no. Pt 5 (March 2006): 789–800. https://doi.org/10.1242/jeb.02053.Full Text
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Leech, D. M., and S. Johnsen. “UV vision and the Feeding Ecology of Juvenile Bluegill Sunfish, Lepomis machrochirus.” Canadian Journal of Fisheries and Aquatic Sciences 63 (2006): 2183–90.
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Johnsen, Sönke, and Kenneth J. Lohmann. “The physics and neurobiology of magnetoreception.” Nature Reviews. Neuroscience 6, no. 9 (September 2005): 703–12. https://doi.org/10.1038/nrn1745.Full Text
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Johnsen, Sönke. “The red and the black: bioluminescence and the color of animals in the deep sea.” Integrative and Comparative Biology 45, no. 2 (April 2005): 234–46. https://doi.org/10.1093/icb/45.2.234.Full Text
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Weissburg, M. J., H. I. Browman, D. M. Fields, J. M. Hemmi, J. Zeil, D. M. Higgs, S. Johnsen, et al. “Sensory biology: Linking the internal and external ecologies of marine organisms.” Marine Ecology Progress Series 287 (February 18, 2005): 263–307. https://doi.org/10.3354/meps287263.Full Text
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Johnsen, S. “Visual ecology on the high seas.” Marine Ecology Progress Series 287 (January 1, 2005): 281–85.Link to Item
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Blevins, Erin, and Sönke Johnsen. “Spatial vision in the echinoid genus Echinometra.” The Journal of Experimental Biology 207, no. Pt 24 (November 2004): 4249–53. https://doi.org/10.1242/jeb.01286.Full Text
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Marsili, Stefania, Rudolf I. Salganik, Craig D. Albright, Christopher D. Freel, Sonke Johnsen, Robert L. Peiffer, and M Joseph Costello. “Cataract formation in a strain of rats selected for high oxidative stress.” Exp Eye Res 79, no. 5 (November 2004): 595–612. https://doi.org/10.1016/j.exer.2004.06.008.Full Text Link to Item
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Gilliland, Kurt O., Christopher D. Freel, Sonke Johnsen, W. Craig Fowler, and M Joseph Costello. “Distribution, spherical structure and predicted Mie scattering of multilamellar bodies in human age-related nuclear cataracts.” Exp Eye Res 79, no. 4 (October 2004): 563–76. https://doi.org/10.1016/j.exer.2004.05.017.Full Text Link to Item
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Johnsen, Sönke, Edith A. Widder, and Curtis D. Mobley. “Propagation and perception of bioluminescence: factors affecting counterillumination as a cryptic strategy.” The Biological Bulletin 207, no. 1 (August 2004): 1–16. https://doi.org/10.2307/1543624.Full Text
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Gilliland, K. O., C. D. Freel, S. Johnsen, C. Fowler, and M. J. Costello. “Random distribution of multilamellar bodies in human age-related nuclear cataracts.” Experimental Eye Research 79 (2004): 563–76.
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Johnsen, S., and H. M. Sosik. “Shedding light on light in the ocean.” Oceanus 43 (2004): 24–28.
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Johnsen, Sönke. “Lifting the cloak of invisibility: the effects of changing optical conditions on pelagic crypsis.” Integrative and Comparative Biology 43, no. 4 (August 2003): 580–90. https://doi.org/10.1093/icb/43.4.580.Full Text
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Sweeney, Alison, Christopher Jiggins, and Sönke Johnsen. “Insect communication: Polarized light as a butterfly mating signal.” Nature 423, no. 6935 (May 2003): 31–32. https://doi.org/10.1038/423031a.Full Text
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Avens, L., J. H. Wang, S. Johnsen, P. Dukes, and K. J. Lohmann. “Responses of hatchling sea turtles to rotational displacements.” Journal of Experimental Marine Biology and Ecology 288, no. 1 (March 25, 2003): 111–24. https://doi.org/10.1016/S0022-0981(03)00002-9.Full Text
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Johnsen, S., and H. M. Sosik. “Cryptic coloration and mirrored sides as camouflage strategies in near-surface pelagic habitats: Implications for foraging and predator avoidance.” Limnology and Oceanography 48, no. 3 (January 1, 2003): 1277–88. https://doi.org/10.4319/lo.2003.48.3.1277.Full Text
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Johnsen, Sönke. “Cryptic and conspicuous coloration in the pelagic environment.” Proceedings. Biological Sciences 269, no. 1488 (February 2002): 243–56. https://doi.org/10.1098/rspb.2001.1855.Full Text
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Johnsen, S. “Hidden in plain sight: the ecology and physiology of organismal transparency.” The Biological Bulletin 201, no. 3 (December 2001): 301–18. https://doi.org/10.2307/1543609.Full Text
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Johnsen, S., and E. A. Widder. “Ultraviolet absorption in transparent zooplankton and its implications for depth distribution and visual predation.” Marine Biology 138, no. 4 (January 1, 2001): 717–30. https://doi.org/10.1007/s002270000499.Full Text
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Lohmann, K. J., and S. Johnsen. “The neurobiology of magnetoreception in vertebrate animals.” Trends in Neurosciences 23, no. 4 (April 2000): 153–59. https://doi.org/10.1016/s0166-2236(99)01542-8.Full Text
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Johnsen, S. “Transparent animals.” Scientific American 282, no. 2 (February 2000): 80–89. https://doi.org/10.1038/scientificamerican0200-80.Full Text
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Widder, E. A., and S. Johnsen. “3D spatial point patterns of bioluminescent plankton: A map of the 'mine field'.” Journal of Plankton Research 22, no. 3 (January 1, 2000): 409–20. https://doi.org/10.1093/plankt/22.3.409.Full Text
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Johnsen, S., and W. M. Kier. “Shade-seeking behaviour under polarized light by the brittlestar Ophioderma brevispinum (Echinodermata: Ophiuroidea).” Journal of the Marine Biological Association of the United Kingdom 79, no. 4 (August 1, 1999): 761–63. https://doi.org/10.1017/S0025315498000940.Full Text
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Widder, E. A., S. Johnsen, S. A. Bernstein, J. F. Case, and D. J. Neilson. “Thin layers of bioluminescent copepods found at density discontinuities in the water column.” Marine Biology 134, no. 3 (August 1, 1999): 429–37. https://doi.org/10.1007/s002270050559.Full Text
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Johnsen, S., and E. A. Widder. “The physical basis of transparency in biological tissue: Ultrastructure and the minimization of light scattering.” Journal of Theoretical Biology 199, no. 2 (July 21, 1999): 181–98. https://doi.org/10.1006/jtbi.1999.0948.Full Text
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Johnsen, S., E. J. Balser, and E. A. Widder. “Light-emitting suckers in an octopus.” Nature 398, no. 6723 (March 11, 1999): 113–14. https://doi.org/10.1038/18131.Full Text
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Johnsen, S., E. J. Balser, E. C. Fisher, and E. A. Widder. “Bioluminescence in the deep-sea cirrate octopod Stauroteuthis syrtensis verrill (Mollusca: Cephalopoda).” Biological Bulletin 197, no. 1 (January 1, 1999): 26–39. https://doi.org/10.2307/1542994.Full Text
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Johnsen, S., and E. A. Widder. “Transparency and visibility of gelatinous zooplankton from the Northwestern Atlantic and Gulf of Mexico.” Biological Bulletin 195, no. 3 (January 1, 1998): 337–48. https://doi.org/10.2307/1543145.Full Text
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Johnsen, S., and W. M. Kier. “Damage due to solar ultraviolet radiation in the brittlestar Ophioderma brevispinum (Echinodermata: Ophiuroidea).” Journal of the Marine Biological Association of the United Kingdom 78, no. 2 (January 1, 1998): 681–84. https://doi.org/10.1017/S0025315400041758.Full Text
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Johnsen, S. “Identification and localization of a possible rhodopsin in the echinoderms Asterias forbesi (Asteroidea) and Ophioderma brevispinum (Ophiuroidea).” The Biological Bulletin 193, no. 1 (August 1997): 97–105. https://doi.org/10.2307/1542739.Full Text
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Johnsen, S. “Extraocular sensitivity to polarized light in an echinoderm.” The Journal of Experimental Biology 195 (October 1994): 281–91. https://doi.org/10.1242/jeb.195.1.281.Full Text
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Johnsen, S., and W. M. Kier. “Intramuscular crossed connective tissue fibres: skeletal support in the lateral fins of squid and cuttlefish (Mollusca: Cephalopoda).” Journal of Zoology 231, no. 2 (January 1, 1993): 311–38. https://doi.org/10.1111/j.1469-7998.1993.tb01921.x.Full Text
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Kauffman, S. A., and S. Johnsen. “Coevolution to the edge of chaos: coupled fitness landscapes, poised states, and coevolutionary avalanches.” Journal of Theoretical Biology 149, no. 4 (April 1991): 467–505. https://doi.org/10.1016/s0022-5193(05)80094-3.Full Text
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Book Sections
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Zylinski, S., and S. Johnsen. “Visual cognition in deep-sea cephalopods: What we don’t know and why we don’t know it.” In Cephalopod Cognition, 223–41, 2014. https://doi.org/10.1017/CBO9781139058964.014.Full Text
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Marshall, J., and S. Johnsen. “Camouflage in marine fish.” In Animal Camouflage: Mechanisms and Function, 186–211, 2011. https://doi.org/10.1017/CBO9780511852053.011.Full Text
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Leech, D. M., and S. Johnsen. “Light, Biological Receptors.” In Encyclopedia of Inland Waters, 671–81, 2009. https://doi.org/10.1016/B978-012370626-3.00073-9.Full Text
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Conference Papers
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Caves, E. M., and S. Johnsen. “The sensory impacts of climate change: Bathymetric shifts and visually-mediated interactions in aquatic species.” In Integrative and Comparative Biology, 61:E122–23, 2021.Link to Item
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Davis, A. L., K. N. Thomas, F. E. Goetz, B. H. Robison, S. Johnsen, and K. J. Osborn. “Hiding in the deep: ultra-black camouflage in fishes.” In Integrative and Comparative Biology, 61:E184–E184, 2021.Link to Item
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Granger, J., and S. Johnsen. “Magnetoreception and the radio sun.” In Integrative and Comparative Biology, 61:E328–E328, 2021.Link to Item
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Johnsen, S., K. L. Lohmann, and E. J. Warrant. “The wobbly compass needle: are the peculiarities of magnetic orientation behavior partially explained by low signal relative to noise?” In Integrative and Comparative Biology, 61:E421–22, 2021.Link to Item
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Meja, B., J. C. Notar, and S. Johnsen. “Insects go with flow: A mathematical model of induced flow and cooling during flight.” In Integrative and Comparative Biology, 61:E1199–E1199, 2021.Link to Item
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Notar, J. C., B. Meja, and S. Johnsen. “A living shag rug: Sea urchin spine density differs by habitat and has consequences for vision.” In Integrative and Comparative Biology, 61:E657–58, 2021.Link to Item
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Nowicki, S., E. M. Caves, P. A. Green, M. N. Zipple, D. Bharath, S. Peters, and S. Johnsen. “Differences in categorical color perception between two estrildid finches.” In Integrative and Comparative Biology, 61:E658–59, 2021.Link to Item
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Davis, A. L., H. F. Nijhout, and S. Johnsen. “Convergent evolution of ultra-black butterfly scales.” In Integrative and Comparative Biology, 60:E53–E53, 2020.Link to Item
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Fitak, R. R., B. R. Wheeler, L. C. Naisbett-Jones, M. M. Scanlan, D. L. G. Noakes, and S. Johnsen. “Time-dependent Characterization of Candidate Magnetoreception Genes in the Brain of Chinook Salmon.” In Integrative and Comparative Biology, 60:E71–E71, 2020.Link to Item
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Go, M., J. C. Notar, and S. Johnsen. “Associative learning in the brittle star Ophioderma brevispinum.” In Integrative and Comparative Biology, 60:E329–E329, 2020.Link to Item
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Granger, J., L. Walkowicz, R. Fitak, and S. Johnsen. “Gray Whales Strand More Often on Days With Increased Levels of Atmospheric Radio Frequency Noise.” In Integrative and Comparative Biology, 60:E89–E89, 2020.Link to Item
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Harris, O. K., A. C. N. Kingston, N. R. Steichmann, S. Johnsen, and D. I. Speiser. “How and why are the blue eyes of scallops blue?” In Integrative and Comparative Biology, 60:E96–E96, 2020.Link to Item
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Johnsen, S., and E. M. Caves. “How our perceptual and cognitive biases may influence our study of animal vision.” In Integrative and Comparative Biology, 60:E113–E113, 2020.Link to Item
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Notar, J. C., and S. Johnsen. “Trends in Spatial Acuity Across the Sea Urchins.” In Integrative and Comparative Biology, 60:E388–E388, 2020.Link to Item
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Nowicki, S., E. M. Caves, L. E. Schweikert, P. A. Green, C. Taboada, M. N. Zipple, S. Peters, and S. Johnsen. “Carotenoid Concentration in Avian Retinal Oil Droplets Correlates with Color Discrimination Across a Perceptual Category Boundary.” In Integrative and Comparative Biology, 60:E175–E175, 2020.Link to Item
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Schweikert, L. E., A. L. Davis, S. Johnsen, and H. D. Bracken-Grissom. “Vision and Bioluminescence in Deep-sea Shrimps: Implications for Conspecific Recognition.” In Integrative and Comparative Biology, 60:E209–E209, 2020.Link to Item
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Solie, S. E., and S. Johnsen. “Contrast Sensitivity and Spatial Resolution in the Trinidadian Guppy (Poecilia reticulata).” In Integrative and Comparative Biology, 60:E421–E421, 2020.Link to Item
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Johnsen, S., and H. F. Nijhout. “Super-black butterfly uses stealth technology: honeycomb absorbing structures in the scales of the wings of Trogonoptera brookiana.” In Integrative and Comparative Biology, 59:E112–E112. OXFORD UNIV PRESS INC, 2019.Link to Item
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Notar, J. C., and S. Johnsen. “Sea Urchin Vision in Featureless vs. Spatially Complex Environments.” In Integrative and Comparative Biology, 59:E170–E170. OXFORD UNIV PRESS INC, 2019.Link to Item
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Schweikert, L. E., E. M. Caves, R. R. Fitak, S. E. Solie, T. T. Sutton, and S. Johnsen. “Patterns and Predictors of Spectral Sensitivity Variation in Fishes.” In Integrative and Comparative Biology, 59:E209–E209. OXFORD UNIV PRESS INC, 2019.Link to Item
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Caves, E. M., M. N. Zipple, P. A. Green, S. Peters, S. Johnsen, and S. Nowicki. “Categorical Perception of Color Along a Blue-Green Continuum in Female Zebra Finches.” In Integrative and Comparative Biology, 59:E33–E33. OXFORD UNIV PRESS INC, 2019.Link to Item
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Green, P. A., E. M. Caves, M. N. Zipple, S. Peters, S. Johnsen, and S. Nowicki. “Categorical Perception of a Carotenoid-based Assessment Signal.” In Integrative and Comparative Biology, 59:E87–E87. OXFORD UNIV PRESS INC, 2019.Link to Item
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Bagge, L. E., W. M. Kier, and S. Johnsen. “The ultrastructure of transparent shrimp.” In Integrative and Comparative Biology, 58:E9–E9. OXFORD UNIV PRESS INC, 2018.Link to Item
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Bedore, C. N., R. E. Hueter, and S. Johnsen. “Visual Ecology of the White Shark and Shortfin Mako.” In Integrative and Comparative Biology, 58:E15–E15. OXFORD UNIV PRESS INC, 2018.Link to Item
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Caves, E. M., P. A. Green, and S. Johnsen. “Signaling in the Cleaner Shrimp-Client Fish Mutualism: Combining Behavior, Network Analysis, and Sensory Physiology.” In Integrative and Comparative Biology, 58:E32–E32. OXFORD UNIV PRESS INC, 2018.Link to Item
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Ernst, D. A., R. R. Fitak, M. Schmidt, C. D. Derby, S. Johnsen, and K. J. Lohmann. “A Magnetic Pulse Induces Differential Gene Expression in the Spiny Lobster Central Nervous System.” In Integrative and Comparative Biology, 58:E59–E59. OXFORD UNIV PRESS INC, 2018.Link to Item
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Fitak, R. R., B. R. Wheeler, L. E. Schweikert, D. A. Ernst, K. J. Lohmann, and S. Johnsen. “Candidate magnetoreception genes in the brain and retina of trout.” In Integrative and Comparative Biology, 58:E65–E65. OXFORD UNIV PRESS INC, 2018.Link to Item
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Johnsen, S., K. J. Osborn, K. N. Thomas, and B. H. Robison. “From the Moon in the Sky to the Deep Blue Sea: Using Lunar Optics to Understand the Blackness of Mesopelagic Fish.” In Integrative and Comparative Biology, 58:E107–E107. OXFORD UNIV PRESS INC, 2018.Link to Item
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Notar, J. C., and S. Johnsen. “Do (Eyeless) Sea Urchins Have Color Vision?” In Integrative and Comparative Biology, 58:E165–E165. OXFORD UNIV PRESS INC, 2018.Link to Item
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Ritschard, E. A., R. R. Fitak, and S. Johnsen. “Sensory insights from the molecular evolution of GPCRs in the Octopus bimaculoides genome.” In Integrative and Comparative Biology, 58:E406–E406. OXFORD UNIV PRESS INC, 2018.Link to Item
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Schweikert, L. E., R. R. Fitak, M. S. Grace, and S. Johnsen. “Dermal Photoreception May Provide Sensory Feedback for Dynamic Coloration.” In Integrative and Comparative Biology, 58:E205–E205. OXFORD UNIV PRESS INC, 2018.Link to Item
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Thomas, K. N., M. Vecchione, and S. Johnsen. “Now you see me, now you don't: Cephalopod visual ranges and implications for deep-sea visual ecology.” In Integrative and Comparative Biology, 58:E232–E232. OXFORD UNIV PRESS INC, 2018.Link to Item
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Costello, M Joseph, Ashik Mohamed, Kurt Gilliland, Sonke Johnsen, and Kevin Schey. “High resolution confocal microscopy of potential newly described nuclear excisosomes in primate lenses.” In Investigative Ophthalmology & Visual Science, Vol. 58. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2017.Link to Item
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Bagge, L. E., and S. Johnsen. “Anti-reflective invisibility cloak: monolayers of spheres reduce cuticle reflectance in hyperiid amphipods.” In Integrative and Comparative Biology, 57:E197–E197. OXFORD UNIV PRESS INC, 2017.Link to Item
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Caves, E. M., C. C. Chen, and S. Johnsen. “Coarse vision isn't useless vision: cleaner shrimp use monochromatic, low-resolution vision to detect client fish.” In Integrative and Comparative Biology, 57:E221–E221. OXFORD UNIV PRESS INC, 2017.Link to Item
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Johnsen, S., and G. D. Ruxton. “Join Now! The increased visibility of large groups of aquatic and aerial organisms is far outweighed by the benefits of aggregation.” In Integrative and Comparative Biology, 57:E305–E305. OXFORD UNIV PRESS INC, 2017.Link to Item
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Thomas, K. N., M. Vecchione, and S. Johnsen. “What big eyes you have: Eye allometry and visual range in deep-sea cephalopods.” In Integrative and Comparative Biology, 57:E429–E429. OXFORD UNIV PRESS INC, 2017.Link to Item
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Bagge, L. E., S. T. Kinsey, and S. Johnsen. “The limits of an invisibility cloak: transparent shrimp become opaque after multiple tail-flipping escapes.” In Integrative and Comparative Biology, 56:E9–E9. OXFORD UNIV PRESS INC, 2016.Link to Item
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Brandley, N., E. Caves, and S. Johnsen. “Do warning signals exploit an evolutionary constraint on insect visual acuity?” In Integrative and Comparative Biology, 56:E23–E23. OXFORD UNIV PRESS INC, 2016.Link to Item
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Caves, E. M., N. C. Brandley, and S. Johnsen. “Visual acuity in fish: the effects of eye morphology, environment, and ecology.” In Integrative and Comparative Biology, 56:E32–E32. OXFORD UNIV PRESS INC, 2016.Link to Item
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Johnsen, S. “What Next? Unanswered questions about extraocular photoreception and how we might answer them.” In Integrative and Comparative Biology, 56:E103–E103. OXFORD UNIV PRESS INC, 2016.Link to Item
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Johnsen, S., Y. L. Gagnon, N. J. Marshall, and T. W. Cronin. “Another beautiful hypothesis slain by an ugly fact: Polarization vision does not increase the sighting distance of silvery fish.” In Integrative and Comparative Biology, 56:E103–E103. OXFORD UNIV PRESS INC, 2016.Link to Item
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Thomas, K. N., B. H. Robison, and S. Johnsen. “The perks of being cock-eyed: Orientation and visual characteristics of histioteuthid squids.” In Integrative and Comparative Biology, 56:E221–E221. OXFORD UNIV PRESS INC, 2016.Link to Item
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Caves, E. M., T. M. Frank, and S. Johnsen. “Colorblind colorful animals: Spectral sensitivity, temporal resolution, and spatial resolution in three species of cleaner shrimp.” In Integrative and Comparative Biology, 55:E27–E27. OXFORD UNIV PRESS INC, 2015.Link to Item
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Palmer, G., and S. Johnsen. “By the light of the silvery moon: The effect of lunar phase on the color of twilight and its implications for animal behavior.” In Integrative and Comparative Biology, 55:E138–E138. OXFORD UNIV PRESS INC, 2015.Link to Item
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Akre, K. L., and S. Johnsen. “Proportional psychophysics and the evolution of behavior: The broad influence of Weber's law.” In Integrative and Comparative Biology, 54:E4–E4. OXFORD UNIV PRESS INC, 2014.Link to Item
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Bagge, L. E., W. M. Kier, and S. Johnsen. “Clearly camouflaged: muscle architecture in transparent shrimp.” In Integrative and Comparative Biology, 54:E9–E9. OXFORD UNIV PRESS INC, 2014.Link to Item
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Bedore, C. N., S. M. Kajiura, and S. J. Johnsen. “Bioelectric crypsis in cephalopods reduces detection by shark predators.” In Integrative and Comparative Biology, 54:E15–E15. OXFORD UNIV PRESS INC, 2014.Link to Item
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Johnsen, S., E. Sawicka, R. Reynolds, and D. Stramski. “Through the looking glass: The structure of the oceanic light field and its implications for mirror-based camouflage.” In Integrative and Comparative Biology, 54:E102–E102. OXFORD UNIV PRESS INC, 2014.Link to Item
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Costello, M., Ashik Mohamed, Kurt Gilliland, William Fowler, and Sonke Johnsen. “Fiber Cell Compaction in Adult Human Lenses Begins Near the Remodeling Zone in the Outer Cortex.” In Investigative Ophthalmology & Visual Science, Vol. 54. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2013.Link to Item
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Bagge, L. E., and S. Johnsen. “Looking at invisibility: anti-reflective structures and strategies in hyperiid amphipods.” In Integrative and Comparative Biology, 53:E242–E242. OXFORD UNIV PRESS INC, 2013.Link to Item
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Brandley, N. C., M. G. Johnson, and S. Johnsen. “Reduction of an aposematic signal: the role of microhabitat in North American black widows (Latrodectus).” In Integrative and Comparative Biology, 53:E22–E22. OXFORD UNIV PRESS INC, 2013.Link to Item
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Gagnon, Y. L., and S. Johnsen. “Visual acuity in deep-sea fish and mollusks.” In Integrative and Comparative Biology, 53:E73–E73. OXFORD UNIV PRESS INC, 2013.Link to Item
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Johnsen, S., D. -. E. Nilsson, and E. J. Warrant. “Why do giant squid have giant eyes?” In Integrative and Comparative Biology, 53:E104–E104. OXFORD UNIV PRESS INC, 2013.Link to Item
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Sweeney, A. M., S. Johnsen, Y. Gagnon, D. E. Morse, and D. Stramski. “Jurassic marine photonics: Squid dynamic iridescence and predation by large extinct marine reptiles.” In Integrative and Comparative Biology, 53:E210–E210. OXFORD UNIV PRESS INC, 2013.Link to Item
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Brandley, N. C., and S. Johnsen. “The black widow's hourglass: a covert aposematic signal?” In Integrative and Comparative Biology, 52:E19–E19. OXFORD UNIV PRESS INC, 2012.Link to Item
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Johnsen, S., and N. J. Marshall. “Through the looking glass: Are silvery fish safe from viewers with polarization vision?” In Integrative and Comparative Biology, 52:E87–E87. OXFORD UNIV PRESS INC, 2012.Link to Item
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Speiser, D., Y. L. Gagnon, R. K. Chhetri, A. L. Oldenburg, and S. Johnsen. “Optical coherence tomography (OCT) reveals that scallop eyes may have bifocal optics.” In Integrative and Comparative Biology, 52:E165–E165. OXFORD UNIV PRESS INC, 2012.Link to Item
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Zylinski, S., and S. Johnsen. “CAMOUFLAGE WITHOUT COMPROMISE: CEPHALOPODS SWITCH BETWEEN TRANSPARENCY AND PIGMENTATION TO OPTIMIZE CRYPSIS IN THE DEEP.” In Journal of Shellfish Research, 30:1023–1023. NATL SHELLFISHERIES ASSOC, 2011.Link to Item
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Baldwin, Fergus J. L., and S. Johnsen. “When love is blind: Vision constrained by molting during mating in the female blue crab.” In Integrative and Comparative Biology, 51:E6–E6. OXFORD UNIV PRESS INC, 2011.Link to Item
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Johnsen, S., and N. J. Marshall. “Using sunglasses to find the best burger in town: Polarization vision as a camouflage breaker in pelagic predators.” In Integrative and Comparative Biology, 51:E64–E64. OXFORD UNIV PRESS INC, 2011.Link to Item
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Speiser, D., and S. Johnsen. “Seeing through rocks: Chitons use calcium carbonate lenses to form images.” In Integrative and Comparative Biology, 51:E130–E130. OXFORD UNIV PRESS INC, 2011.Link to Item
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Baldwin, J. L., and S. Johnsen. “Does this color make my claws look phat? Evaluating claw color preferences in male blue crabs, Callinectes sapidus.” In Integrative and Comparative Biology, 50:E7–E7. OXFORD UNIV PRESS INC, 2010.Link to Item
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Bhandiwad, A. A., and S. Johnsen. “Now you see it, now you don't: the effects of salinity and temperature on the transparency of the ghost shrimp, Palaemonetes pugio.” In Integrative and Comparative Biology, 50:E205–E205. OXFORD UNIV PRESS INC, 2010.Link to Item
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Johnsen, S., and S. H. D. Haddock. “A glowing benthic animal is hard to find: A photographic and spectroscopic survey of bioluminescence on the deep-sea floor.” In Integrative and Comparative Biology, 50:E83–E83. OXFORD UNIV PRESS INC, 2010.Link to Item
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Speiser, D., E. R. Loew, and S. Johnsen. “Spectral sensitivity of the concave mirror eyes of scallops: The influence of habitat and longitudinal chromatic aberration.” In Integrative and Comparative Biology, 50:E166–E166. OXFORD UNIV PRESS INC, 2010.Link to Item
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Costello, M. J., S. Johnsen, K. O. Gilliland, S. Metlapally, and D. Balasubramanian. “Direct Evidence for Spherical Multilamellar Bodies as Sources of Excess Light Scattering in Human Age-Related Nuclear Cataracts.” In Investigative Ophthalmology & Visual Science, Vol. 51. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2010.Link to Item
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Baldwin, J. L., and S. Johnsen. “Pining for Pinups: the importance of color in mate choice of the blue crab Callinectes sapidus.” In Integrative and Comparative Biology, 49:E9–E9. OXFORD UNIV PRESS INC, 2009.Link to Item
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Johnsen, S., and W. M. Kier. “You can hide, but you can't run: trade-offs between muscle activation and transparency in glass catfish.” In Integrative and Comparative Biology, 49:E86–E86. OXFORD UNIV PRESS INC, 2009.Link to Item
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Speiser, D., and S. Johnsen. “The optics and evolution of scallop eyes.” In Integrative and Comparative Biology, 49:E160–E160. OXFORD UNIV PRESS INC, 2009.Link to Item
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Sweeney, A. M., M. Matz, D. E. Morse, and S. Johnsen. “Patterns of S-crystallin evolution are correlated with optical acuity in cephalopods.” In Integrative and Comparative Biology, 49:E166–E166. OXFORD UNIV PRESS INC, 2009.Link to Item
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Johnsen, S. “Visual Ecology on the high seas.” In Integrative and Comparative Biology, 46:E69–E69. OXFORD UNIV PRESS INC, 2006.Link to Item
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Speiser, D. I., A. M. Sweeney, and S. Johnsen. “Scallops respond to simulated particles in flow.” In Integrative and Comparative Biology, 46:E134–E134. OXFORD UNIV PRESS INC, 2006.Link to Item
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Sweeney, A., and S. Johnsen. “Evolution of high-acuity vision in coleoid cephalopods.” In Integrative and Comparative Biology, 46:E139–E139. OXFORD UNIV PRESS INC, 2006.Link to Item
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Johnsen, S., A. Kelber, E. J. Warrant, A. M. Sweeney, E. A. Widder, R. L. Lee, and J. Hernandez-Andres. “The color of night: Twilight and nocturnal illumination and its effects on color perception.” In Integrative and Comparative Biology, 45:1021–1021. OXFORD UNIV PRESS INC, 2005.Link to Item
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Mora, C. V., S. Johnsen, and K. J. Lohmann. “Detection of polarized light by loggerhead sea turtles (Caretta caretta).” In Integrative and Comparative Biology, 45:1047–1047. OXFORD UNIV PRESS INC, 2005.Link to Item
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Speiser, D. I., and S. Johnsen. “Wavelength-dependent phototaxis as a depth regulating mechanism in a ctenophore.” In Integrative and Comparative Biology, 45:1197–1197. OXFORD UNIV PRESS INC, 2005.Link to Item
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Sweeney, A., D. L. Des Marais, A. Ban, and S. Johnsen. “Evolving refractive index: How lens protein evolution contributed to high-resolution squid vision.” In Integrative and Comparative Biology, 45:1080–1080. OXFORD UNIV PRESS INC, 2005.Link to Item
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Tuthill, J. C., and S. Johnsen. “Polarization vision in crayfish enhances motion detection.” In Integrative and Comparative Biology, 45:1204–1204. OXFORD UNIV PRESS INC, 2005.Link to Item
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Blevins, E. L., and S. Johnsen. “Spatial vision in the echinoid genus Echinometra.” In Integrative and Comparative Biology, 44:526–526. OXFORD UNIV PRESS INC, 2004.Link to Item
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Johnsen, S. “The red and the black: Bioluminescence and the color of animals in the deep sea.” In Integrative and Comparative Biology, 44:578–578. OXFORD UNIV PRESS INC, 2004.Link to Item
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Sweeney, A., and S. Johnsen. “Evolution of complex optics in squid lenses.” In Integrative and Comparative Biology, 44:649–649. OXFORD UNIV PRESS INC, 2004.Link to Item
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Costello, M. J., K. P. Gilliland, C. D. Freel, W. C. Fowler, and S. Johnsen. “Mie light scattering analysis of human age-related nuclear cataracts.” In Investigative Ophthalmology & Visual Science, 45:U170–U170. ASSOC RESEARCH VISION OPHTHALMOLOGY INC, 2004.Link to Item
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Johnsen, S. “Troubles in flashlight world: The effects of water turbidity and visual acuity on the success of counterillumination in deep-sea species.” In Integrative and Comparative Biology, 43:808–808. SOC INTEGRATIVE COMPARATIVE BIOLOGY, 2003.Link to Item
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Sweeney, A. M., and S. Johnsen. “Biological optical instruments in the deep sea.” In Integrative and Comparative Biology, 43:1016–1016. SOC INTEGRATIVE COMPARATIVE BIOLOGY, 2003.Link to Item
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Johnsen, S. “Minors or colors? Successful fashions for crypsis in the pelagic realm.” In Integrative and Comparative Biology, 42:1251–1251. SOC INTEGRATIVE COMPARATIVE BIOLOGY, 2002.Link to Item
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Sweeney, A., C. Jiggins, and S. Johnsen. “Bio-optics and visual ecology of Heliconius color patterns.” In Integrative and Comparative Biology, 42:1321–1321. SOC INTEGRATIVE COMPARATIVE BIOLOGY, 2002.Link to Item
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Datasets
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Green, Patrick, Sonke Johnsen, Matthew N. Zipple, stephen Nowicki, Eleanor M. Caves, and Susan Peters. “Data and scripts from: Categorical perception of colour signals in a songbird,” June 12, 2018. https://doi.org/10.7924/r4rx96r99.Data Access
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- Teaching & Mentoring
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Recent Courses
- BIOLOGY 427S: Current Topics in Sensory Biology 2023
- BIOLOGY 493: Research Independent Study 2023
- BIOLOGY 792: Research 2023
- NEUROSCI 427S: Current Topics in Sensory Biology 2023
- BIOLOGY 293: Research Independent Study 2022
- BIOLOGY 427A: Current Topics in Sensory Biology 2022
- BIOLOGY 427S: Current Topics in Sensory Biology 2022
- BIOLOGY 493: Research Independent Study 2022
- BIOLOGY 791T: Tutorial 2022
- BIOLOGY 792: Research 2022
- MARSCI 427A: Current Topics in Sensory Biology 2022
- NEUROSCI 392: Neuroscience Independent Scholarship 2: Advanced Topics 2022
- NEUROSCI 427S: Current Topics in Sensory Biology 2022
- BIOLOGY 293: Research Independent Study 2021
- BIOLOGY 427S: Current Topics in Sensory Biology 2021
- BIOLOGY 493: Research Independent Study 2021
- BIOLOGY 791T: Tutorial 2021
- NEUROSCI 391: Neuroscience Independent Scholarship 1: Advanced Topics 2021
- NEUROSCI 427S: Current Topics in Sensory Biology 2021
- Scholarly, Clinical, & Service Activities
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Presentations & Appearances
- Bioluminescence and ultra-black camouflage in deep-sea fish. Adam Mickiewicz University, Poland. 2021 2021
- Bioluminescence and ultra-black camouflage in deep-sea fish. Air Force Research Laboratories. 2021 2021
- Bioluminescence and ultra-black camouflage in deep-sea fish. Chapman University. 2021 2021
- Bioluminescence and ultra-black camouflage in deep-sea fish. Exeter University. 2021 2021
- Bioluminescence and ultra-black camouflage in deep-sea fish. MacQuarie University, Australia. 2021 2021
- Bioluminescence and ultra-black camouflage in deep-sea fish. Mediterreanean Institute of Oceanography. 2021 2021
- Bioluminescence and ultra-black camouflage in deep-sea fish. OSA Advanced Photonics Congress. OSA. 2021 2021
- Bioluminescence and ultra-black camouflage in deep-sea fish. SUNY Stony Brook. 2021 2021
- Distributed sensing in super-organisms: how flocking can obviate the need for multiple cues . University Days. Air Force Research Laboratories. 2021 2021
- How our snesory and cognitive biases affect our study of sensory biology. Neurobiology series. University of Sussex. 2021 2021
- How our snesory and cognitive biases affect our study of sensory biology. University of Cincinnati. 2021 2021
- The influence of hierarchical structure on the properties of melanin, a multi-functional material. University Days. Air Forceas Research Laboratories. 2021 2021
- selective invisiblity: Designing lures to reduce byctach. ICES-FAO working group. Bergen University, Norway. 2021 2021
- Hide and Seek in the Open Sea. Biology Department Seminar. University of South Carolina. 2020 2020
- How our perceptual and cognitive biases may influence our study of animal vision . SICB annual Meeting. 2020 2020
- Vision, bioluminescence, and ultrablack camouflage in deep-sea fish. VisionFest 2020. Duke University. 2020 2020
- Wonders of the Deep. October 25, 2013 2013
- Hide and Seek in the Open Sea. October 11, 2013 2013
- Hide and Seek in the Open Sea. September 29, 2013 2013
- Optimal Visual Resolution in Attenuating Media. August 9, 2013 2013
- The Biophysics of Organismal Transparency. April 4, 2013 2013
- Hide and Seek in the Open Sea. April 1, 2013 2013
- Hide and Seek in the Open Sea. January 31, 2013 2013
- Through the Looking Glass: Polarization vision as a breaker of mirrored and transparency camouflage. October 11, 2012 2012
- Hide and Seek in the Open Sea. October 3, 2012 2012
- The biophysics of organismal transparency. October 3, 2012 2012
- Through the Looking Glass: Polarization vision as a breaker of mirrored and transparency camouflage. August 10, 2012 2012
- The biophysics of organismal transparency. February 10, 2012 2012
- Hide and Seek in the Open Sea. February 8, 2012 2012
- Dymanic Camouflage in Cephalopods. January 13, 2012 2012
- Modes of transparency in pelagic species. October 12, 2011 2011
- Camouflage in benthic and pelagic cephalopods. August 25, 2011 2011
- The physiology and ecology of organismal transparency. April 1, 2011 2011
- The application of mathematics to biological optics. February 11, 2011 2011
- The biophysics of organismal transparency. December 8, 2010 2010
- Hidden in Plain Sight: The physiology and ecology of organismal transparency. December 1, 2010 2010
- Dynamic Camouflage in Benthic and Pelagic Cephalopods. November 15, 2010 2010
- The biophysics of organismal transparency. July 9, 2010 2010
- Vision in Headless animals: insights gained from the study of animals with diffuse sensory systems. June 24, 2010 2010
- Hide and Seek in the Open Sea. June 22, 2010 2010
- The biophysics of organismal transparency. April 8, 2010 2010
- Hide and Seek in the Open Sea. April 2, 2010 2010
- Hidden in Plain Sight: The physiology and ecology of organismal transparency. March 11, 2010 2010
- Dynamic Camouflage in Benthic and Pelagic Cephalopods. August 27, 2009 2009
- Hidden in Plain Sight: The physiology and ecology of organismal transparency. May 26, 2009 2009
- Hidden in Plain Sight: The physiology and ecology of organismal transparency. April 16, 2009 2009
- The Red and the Black: Cryptic coloration and bioluminescencein the deep sea. April 15, 2009 2009
- Hide and Seek in the Open Sea. April 7, 2009 2009
- Two one-hour seminars. October 15, 2008 2008
- Hidden in plain sight, the ecology and physiology of organismal transparency. September 30, 2008 2008
- The Red and the Black: Bioluminescence and cryptic coloration in the deep sea. September 18, 2008 2008
- In vivo imaging of the polarization properties of plankton and nekton. June 10, 2008 2008
- The Physical Basis of Magnetoreception. February 5, 2008 2008
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Outreach & Engaged Scholarship
- Unknown. donation of many deep-sea images to various ocean conservation organizations. January 1, 2011 2011
- Unknown. numerous interviews to multiple media outlets, including the BBC, New York Times, and Science News. January 1, 2011 2011
- Unknown. tours of lab for primary and secondary students. January 1, 2011 2011
- Unknown. Talk at Southeast Barrier Island Center. September 11, 2010 2010
- Unknown. Talk at North Carolina State Museum. August 12, 2010 2010
- Unknown. talk at Triangle Dive Club. 2010 2010
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