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Stacy M. Horner

Associate Professor in Integrative Immunobiology
Integrative Immunobiology
213 Research Drive, Room 0034 CARL Bldg, Durham, NC 27710

Overview


Studying the RNA biology, cell biology, and immunology of RNA virus infection

Our lab studies the molecular mechanisms that regulate RNA virus-host interactions. We focus primarily on viruses in the Flaviviridae family of viruses, including dengue virus (DENV), Zika virus (ZIKV), and hepatitis C virus (HCV). Our research is focused on defining (1) how these viruses replicate, (2) the mechanisms that regulate antiviral innate immunity to these viruses, and (3) RNA regulatory controls to both of these processes. Our lab has pioneered approaches to how the RNA modification m6A regulates viral infection, antiviral innate immunity and the host response to virus infection. Our long-term goal is to discover the necessary mechanistic and functional information to guide future development of new strategies for virus treatment and prevention.

Lab Website

Current Appointments & Affiliations


Associate Professor in Integrative Immunobiology · 2022 - Present Integrative Immunobiology, Basic Science Departments
Associate Professor of Medicine · 2021 - Present Medicine, Infectious Diseases, Medicine
Associate Professor of Cell Biology · 2022 - Present Cell Biology, Basic Science Departments
Associate Professor of Molecular Genetics and Microbiology · 2022 - Present Molecular Genetics and Microbiology, Basic Science Departments
Member of the Duke Cancer Institute · 2014 - Present Duke Cancer Institute, Institutes and Centers
Associate of the Duke Initiative for Science & Society · 2018 - Present Duke Science & Society, University Initiatives & Academic Support Units

In the News


Published March 27, 2024
The Power and Promise of RNA
Published September 21, 2021
Meet the Newly Tenured Faculty of 2021
Published April 28, 2020
Duke Scientists Studying the Shape of COVID Things to Come

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Recent Publications


A small cationic probe for accurate, punctate discovery of RNA tertiary structure.

Journal Article bioRxiv · November 2, 2025 RNA molecules fold into intricate three-dimensional tertiary structures that are central to their biological functions. Yet reliably discovering new motifs that form true tertiary interactions remains a major challenge. Here we show that RNA tertiary foldi ... Full text Link to item Cite

Split-site ubiquitination gives ZNFX1 new power in RNA defense.

Journal Article Mol Cell · October 16, 2025 Recent work by Grabarczyk et al.1 uncovers the molecular mechanism by which ZNFX1, an interferon-stimulated gene, employs a novel split-site E3 ligase domain structure to ubiquitinate both protein lysine residues and RNA 2' hydroxyls. This activity enables ... Full text Link to item Cite

UFMylation promotes orthoflavivirus infectious particle production.

Journal Article J Virol · July 22, 2025 Post-translational modifications play crucial roles in regulating viral infections, yet roles for many modifications remain unexplored in orthoflavivirus biology. Here, we demonstrate that the UFMylation system, a post-translational modification pathway th ... Full text Link to item Cite
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Recent Grants


Microbial regulation of intestinal epithelial gene expression

ResearchCo Investigator · Awarded by National Institute of Diabetes and Digestive and Kidney Diseases · 2024 - 2028

Duke Preparing Research Scholars in Biomedical Sciences- Post-Baccalaureate Research Education Program

Inst. Training Prgm or CMEMentor · Awarded by National Institute of General Medical Sciences · 2022 - 2027

Defining the role of the RNA modification N6-methyladenosine during Flaviviridae virus infection

ResearchPrincipal Investigator · Awarded by National Institute of Allergy and Infectious Diseases · 2016 - 2027

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Education, Training & Certifications


Yale University · 2007 Ph.D.