Thomas Mitchell-Olds | Scholars@Duke

Thomas Mitchell-Olds
Newman Ivey White Distinguished Professor of Biology

We study genetic variation in plant populations, focusing on genes that influence traits controlling plant performance in an environmental context – a central theme throughout our research in natural and agricultural populations. Much of our work is focused on the genes that affect ecological success and evolutionary fitness in natural environments. Similarly, the interaction of crop plants with their biotic and abiotic environments is controlled by complex trait variation which can be elucidated by interdisciplinary analyses incorporating functional genomics, physiological and chemical ecology, and population and quantitative genetics. We work at several levels: genetic variation within populations, local adaptation among populations, and the evolution of species differences. Our study systems are centered on the wild relatives of Arabidopsis, as well as complex trait variation of rice in Asia and Africa.

Current Appointments & Affiliations

Newman Ivey White Distinguished Professor of Biology, Biology, Trinity College of Arts & Sciences 2014
Professor of Biology, Biology, Trinity College of Arts & Sciences 2005

Contact Information

Duke Box 90338, Durham, NC 27708-0338
French Science Center 3311, Durham, NC 27708
tmo1@duke.edu (919) 668-1635
Mitchell-Olds Lab web pages

Background
Education, Training, & Certifications
- Ph.D., University of Wisconsin at Madison 1985
- B.A., Earlham College 1978
Duke Appointment History
- Research Professor of Biology, Biology, Trinity College of Arts & Sciences 2004 - 2005
Recognition
In the News
- NOV 21, 2017
  
  Three Faculty Elected Fellows of AAAS
- APR 24, 2017 Duke Research Blog
  
  Where Some Ski, Others Do Science
- JUL 14, 2016 SeedQuest
  
  Disentangling the plant microbiome
- JUL 12, 2016
  
  Disentangling the Plant Microbiome
Awards & Honors
- Previous Presidential Award Winners. American Society of Naturalists. 1986
Expertise
Subject Headings
Global Scholarship
- Research
Research
Selected Grants
- DISSERTATION RESEARCH: Genetic Effects of Plant Defense on Above- and Below-ground Ecological Interactions and Natural Selection awarded by National Science Foundation 2017 - 2020
- Bioinformatics and Computational Biology Training Program awarded by National Institutes of Health 2005 - 2020
- Genetics Training Grant awarded by National Institutes of Health 1979 - 2020
- Molecular Causes and Fitness Consequences of Complex Trait Variation awarded by National Institutes of Health 2008 - 2019
- DISSERTATION RESEARCH: The Genetic Architecture of Covarying Traits awarded by National Science Foundation 2014 - 2017
- DISSERTATION RESEARCH: The Genetic Architecture and Evolution of Phenotypic Plasticity for Chemical Defenses in a Wild P awarded by National Science Foundation 2013 - 2016
- DISSERTATION RESEARCH: Evolutionary Genetics of Asexual Reproduction in a Wild Plant Species awarded by National Science Foundation 2013 - 2016
- DISSERTATION RESEARCH: Genetic Architecture and Genomic Divergence During Ecological Speciation in Boechera stricta, a W awarded by National Science Foundation 2011 - 2014
- DISSERTATION RESEARCH: Evolution of a novel phenotype: The role promiscuous enzyme function in adaptation awarded by National Science Foundation 2010 - 2013
- Ecological Genomics of Local Adaptation and Trait Variation in an Arabidopsis Relative awarded by National Science Foundation 2007 - 2011
External Relationships
- High Fidelity Genetics
Publications & Artistic Works
Selected Publications
- Academic Articles
  - Wang, Baosheng, Julius P. Mojica, Nadeesha Perera, Cheng-Ruei Lee, John T. Lovell, Aditi Sharma, Catherine Adam, et al. “Correction to: Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera stricta.” Genome Biology 20, no. 1 (August 9, 2019): 161. https://doi.org/10.1186/s13059-019-1781-5.
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  - Wang, Baosheng, Julius P. Mojica, Nadeesha Perera, Cheng-Ruei Lee, John T. Lovell, Aditi Sharma, Catherine Adam, et al. “Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera stricta.” Genome Biology 20, no. 1 (June 21, 2019): 126. https://doi.org/10.1186/s13059-019-1729-9.
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  - Keith, Rose A., and Thomas Mitchell-Olds. “Antagonistic selection and pleiotropy constrain the evolution of plant chemical defenses.” Evolution; International Journal of Organic Evolution 73, no. 5 (May 2019): 947–60. https://doi.org/10.1111/evo.13728.
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  - Rushworth, Catherine A., Michael D. Windham, Rose A. Keith, and Tom Mitchell-Olds. “Ecological differentiation facilitates fine-scale coexistence of sexual and asexual Boechera.” American Journal of Botany 105, no. 12 (December 13, 2018): 2051–64. https://doi.org/10.1002/ajb2.1201.
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  - Arisz, Steven A., Jae-Yun Heo, Iko T. Koevoets, Tao Zhao, Pieter van Egmond, A Jessica Meyer, Weiqing Zeng, et al. “DIACYLGLYCEROL ACYLTRANSFERASE1 Contributes to Freezing Tolerance.” Plant Physiology 177, no. 4 (August 2018): 1410–24. https://doi.org/10.1104/pp.18.00503.
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  - Grondin, Alexandre, Shalabh Dixit, Rolando Torres, Challa Venkateshwarlu, Eric Rogers, Thomas Mitchell-Olds, Philip N. Benfey, Arvind Kumar, and Amelia Henry. “Physiological mechanisms contributing to the QTL qDTY3.2 effects on improved performance of rice Moroberekan x Swarna BC2F3:4 lines under drought.” Rice (New York, N.Y.) 11, no. 1 (July 31, 2018): 43. https://doi.org/10.1186/s12284-018-0234-1.
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  - Wagner, Maggie R., and Thomas Mitchell-Olds. “Plasticity of plant defense and its evolutionary implications in wild populations of Boechera stricta.” Evolution; International Journal of Organic Evolution 72, no. 5 (May 2018): 1034–49. https://doi.org/10.1111/evo.13469.
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  - Kliver, Sergei, Mike Rayko, Alexey Komissarov, Evgeny Bakin, Daria Zhernakova, Kasavajhala Prasad, Catherine Rushworth, et al. “Assembly of the Boechera retrofracta Genome and Evolutionary Analysis of Apomixis-Associated Genes.” Genes 9, no. 4 (March 28, 2018). https://doi.org/10.3390/genes9040185.
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  - Lee, Cheng-Ruei, Jo-Wei Hsieh, M. E. Schranz, and Thomas Mitchell-Olds. “The Functional Change and Deletion of FLC Homologs Contribute to the Evolution of Rapid Flowering in Boechera stricta.” Frontiers in Plant Science 9 (January 2018): 1078. https://doi.org/10.3389/fpls.2018.01078.
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  - Wang, Baosheng, and Thomas Mitchell-Olds. “Balancing selection and trans-specific polymorphisms.” Genome Biology 18, no. 1 (December 12, 2017): 231. https://doi.org/10.1186/s13059-017-1365-1.
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  - Lee, Cheng-Ruei, Baosheng Wang, Julius P. Mojica, Terezie Mandáková, Kasavajhala V. S. K. Prasad, Jose Luis Goicoechea, Nadeesha Perera, et al. “Publisher correction: Young inversion with multiple linked QTLs under selection in a hybrid zone.” Nature Ecology & Evolution 1, no. 10 (October 2017): 1585. https://doi.org/10.1038/s41559-017-0310-8.
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  - Lee, Cheng-Ruei, Baosheng Wang, Julius P. Mojica, Terezie Mandáková, Kasavajhala V. S. K. Prasad, Jose Luis Goicoechea, Nadeesha Perera, et al. “Erratum: Young inversion with multiple linked QTLs under selection in a hybrid zone.” Nature Ecology & Evolution 1, no. 6 (June 2017). https://doi.org/10.1038/s41559-017-0166.
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  - Lee, Cheng-Ruei, Baosheng Wang, Julius P. Mojica, Terezie Mandáková, Kasavajhala V. S. K. Prasad, Jose Luis Goicoechea, Nadeesha Perera, et al. “Young inversion with multiple linked QTLs under selection in a hybrid zone.” Nature Ecology & Evolution 1, no. 5 (April 3, 2017): 119. https://doi.org/10.1038/s41559-017-0119.
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  - Keith, Rose A., and Thomas Mitchell-Olds. “Testing the optimal defense hypothesis in nature: Variation for glucosinolate profiles within plants.” Plos One 12, no. 7 (January 2017): e0180971. https://doi.org/10.1371/journal.pone.0180971.
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  - Wagner, Maggie R., Derek S. Lundberg, Tijana G. Del Rio, Susannah G. Tringe, Jeffery L. Dangl, and Thomas Mitchell-Olds. “Host genotype and age shape the leaf and root microbiomes of a wild perennial plant.” Nature Communications 7 (July 12, 2016): 12151. https://doi.org/10.1038/ncomms12151.
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  - Yao, Nasser, Cheng-Ruei Lee, Kassa Semagn, Mounirou Sow, Francis Nwilene, Olufisayo Kolade, Roland Bocco, Olumoye Oyetunji, Thomas Mitchell-Olds, and Marie-Noëlle Ndjiondjop. “QTL Mapping in Three Rice Populations Uncovers Major Genomic Regions Associated with African Rice Gall Midge Resistance.” Plos One 11, no. 8 (January 2016): e0160749. https://doi.org/10.1371/journal.pone.0160749.
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  - Anderson, Jill T., Nadeesha Perera, Bashira Chowdhury, and Thomas Mitchell-Olds. “Microgeographic Patterns of Genetic Divergence and Adaptation across Environmental Gradients in Boechera stricta (Brassicaceae).” The American Naturalist 186 Suppl 1 (October 2015): S60–73. https://doi.org/10.1086/682404.
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  - Manzaneda, Antonio J., Pedro J. Rey, Jill T. Anderson, Evan Raskin, Christopher Weiss-Lehman, and Thomas Mitchell-Olds. “Natural variation, differentiation, and genetic trade-offs of ecophysiological traits in response to water limitation in Brachypodium distachyon and its descendent allotetraploid B. hybridum (Poaceae).” Evolution; International Journal of Organic Evolution 69, no. 10 (October 2015): 2689–2704. https://doi.org/10.1111/evo.12776.
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  - Olson-Manning, Carrie F., Christopher F. Strock, and Thomas Mitchell-Olds. “Flux Control in a Defense Pathway in Arabidopsis thaliana Is Robust to Environmental Perturbations and Controls Variation in Adaptive Traits.” G3 (Bethesda, Md.) 5, no. 11 (September 10, 2015): 2421–27. https://doi.org/10.1534/g3.115.021816.
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  - Dixit, Shalabh, Alexandre Grondin, Cheng-Ruei Lee, Amelia Henry, Thomas-Mitchell Olds, and Arvind Kumar. “Understanding rice adaptation to varying agro-ecosystems: trait interactions and quantitative trait loci.” Bmc Genetics 16 (August 5, 2015): 86. https://doi.org/10.1186/s12863-015-0249-1.
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  - Wagner, M. R., D. S. Lundberg, D. Coleman-Derr, S. G. Tringe, J. L. Dangl, and T. Mitchell-Olds. “Corrigendum to Wagner et al.: Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative [Ecology Letters 18(2), (2014) 218-220].” Ecology Letters 18, no. 2 (January 1, 2015): 218–20. https://doi.org/10.1111/ele.12400.
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  - Heo, Jae-Yun, Dongsheng Feng, Xiaomu Niu, Thomas Mitchell-Olds, Peter H. Van Tienderen, Dwight Tomes, and M Eric Schranz. “Identification of quantitative trait loci and a candidate locus for freezing tolerance in controlled and outdoor environments in the overwintering crucifer Boechera stricta.” Plant, Cell & Environment 37, no. 11 (November 2014): 2459–69. https://doi.org/10.1111/pce.12365.
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  - Lee, Cheng-Ruei, Jill T. Anderson, and Thomas Mitchell-Olds. “Unifying genetic canalization, genetic constraint, and genotype-by-environment interaction: QTL by genomic background by environment interaction of flowering time in Boechera stricta.” Plos Genetics 10, no. 10 (October 23, 2014): e1004727. https://doi.org/10.1371/journal.pgen.1004727.
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  - Gordon, Sean P., Henry Priest, David L. Des Marais, Wendy Schackwitz, Melania Figueroa, Joel Martin, Jennifer N. Bragg, et al. “Genome diversity in Brachypodium distachyon: deep sequencing of highly diverse inbred lines.” The Plant Journal : For Cell and Molecular Biology 79, no. 3 (August 2014): 361–74. https://doi.org/10.1111/tpj.12569.
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  - Leamy, Larry J., Cheng-Ruei Lee, Vanessa Cousins, Ibro Mujacic, Antonio J. Manzaneda, Kasavajhala Prasad, Thomas Mitchell-Olds, and Bao-Hua Song. “Large-scale adaptive divergence in Boechera fecunda, an endangered wild relative of Arabidopsis.” Ecology and Evolution 4, no. 16 (August 2014): 3175–86. https://doi.org/10.1002/ece3.1148.
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  - Wagner, Maggie R., Derek S. Lundberg, Devin Coleman-Derr, Susannah G. Tringe, Jeffery L. Dangl, and Thomas Mitchell-Olds. “Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative.” Ecology Letters 17, no. 6 (June 2014): 717–26. https://doi.org/10.1111/ele.12276.
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  - Anderson, J. T., M. R. Wagner, C. A. Rushworth, K. V. S. K. Prasad, and T. Mitchell-Olds. “The evolution of quantitative traits in complex environments.” Heredity 112, no. 1 (January 2014): 4–12. https://doi.org/10.1038/hdy.2013.33.
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  - Anderson, Jill T., Cheng-Ruei Lee, and Thomas Mitchell-Olds. “Strong selection genome-wide enhances fitness trade-offs across environments and episodes of selection.” Evolution; International Journal of Organic Evolution 68, no. 1 (January 2014): 16–31. https://doi.org/10.1111/evo.12259.
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  - Keith, R., and T. Mitchell-Olds. “Genetic variation for resistance to herbivores and plant pathogens: Hypotheses, mechanisms and evolutionary implications.” Plant Pathology 62, no. S1 (December 1, 2013): 122–32. https://doi.org/10.1111/ppa.12134.
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  - Lovell, John T., Olawale M. Aliyu, Martin Mau, M Eric Schranz, Marcus Koch, Christiane Kiefer, Bao-Hua Song, Thomas Mitchell-Olds, and Timothy F. Sharbel. “On the origin and evolution of apomixis in Boechera.” Plant Reproduction 26, no. 4 (December 2013): 309–15. https://doi.org/10.1007/s00497-013-0218-7.
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  - Mitchell-Olds, Thomas. “Selection on QTL and complex traits in complex environments.” Molecular Ecology 22, no. 13 (July 2013): 3427–29. https://doi.org/10.1111/mec.12345.
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  - Topp, Christopher N., Anjali S. Iyer-Pascuzzi, Jill T. Anderson, Cheng-Ruei Lee, Paul R. Zurek, Olga Symonova, Ying Zheng, et al. “3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture.” Proceedings of the National Academy of Sciences of the United States of America 110, no. 18 (April 11, 2013): E1695–1704. https://doi.org/10.1073/pnas.1304354110.
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  - Lee, Cheng-Ruei, and Thomas Mitchell-Olds. “Complex trait divergence contributes to environmental niche differentiation in ecological speciation of Boechera stricta.” Molecular Ecology 22, no. 8 (April 2013): 2204–17. https://doi.org/10.1111/mec.12250.
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  - Anderson, Jill T., Cheng-Ruei Lee, Catherine A. Rushworth, Robert I. Colautti, and Thomas Mitchell-Olds. “Genetic trade-offs and conditional neutrality contribute to local adaptation.” Molecular Ecology 22, no. 3 (February 2013): 699–708. https://doi.org/10.1111/j.1365-294x.2012.05522.x.
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  - Olson-Manning, Carrie F., Cheng-Ruei Lee, Mark D. Rausher, and Thomas Mitchell-Olds. “Evolution of flux control in the glucosinolate pathway in Arabidopsis thaliana.” Molecular Biology and Evolution 30, no. 1 (January 2013): 14–23. https://doi.org/10.1093/molbev/mss204.
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  - Topp, H. F., H. F. CN, A. S. Iyer-Pascuzzi, J. T. Anderson, C. -. R. Lee, P. R. Zurek, O. Symonova, et al. “3-dimensional phenotyping of growing root systems and QTL mapping identifies core regions of the rice genome controlling root architecture.” Pnas 110 (2013): E1695-1704.
  - Vigueira, Cynthia C., Brad Rauh, Thomas Mitchell-Olds, and Amy L. Lawton-Rauh. “Signatures of demography and recombination at coding genes in naturally-distributed populations of Arabidopsis lyrata subsp. petraea.” Plos One 8, no. 3 (January 2013): e58916. https://doi.org/10.1371/journal.pone.0058916.
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  - Yang, Ruolin, David E. Jarvis, Hao Chen, Mark A. Beilstein, Jane Grimwood, Jerry Jenkins, Shengqiang Shu, et al. “The Reference Genome of the Halophytic Plant Eutrema salsugineum.” Frontiers in Plant Science 4 (January 2013): 46. https://doi.org/10.3389/fpls.2013.00046.
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  - Anderson, Jill T., Anne Marie Panetta, and Thomas Mitchell-Olds. “Evolutionary and ecological responses to anthropogenic climate change: update on anthropogenic climate change.” Plant Physiology 160, no. 4 (December 2012): 1728–40. https://doi.org/10.1104/pp.112.206219.
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  - Laluk, K., K. V. S. K. Prasad, T. Savchenko, H. Celesnik, K. Dehesh, M. Levy, T. Mitchell-Olds, and A. S. N. Reddy. “The calmodulin-binding transcription factor SIGNAL RESPONSIVE1 is a novel regulator of glucosinolate metabolism and herbivory tolerance in Arabidopsis.” Plant & Cell Physiology 53, no. 12 (December 2012): 2008–15. https://doi.org/10.1093/pcp/pcs143.
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  - Lee, Cheng-Ruei, and Thomas Mitchell-Olds. “Environmental adaptation contributes to gene polymorphism across the Arabidopsis thaliana genome.” Molecular Biology and Evolution 29, no. 12 (December 2012): 3721–28. https://doi.org/10.1093/molbev/mss174.
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  - Olson-Manning, Carrie F., Maggie R. Wagner, and Thomas Mitchell-Olds. “Adaptive evolution: evaluating empirical support for theoretical predictions.” Nature Reviews. Genetics 13, no. 12 (December 2012): 867–77. https://doi.org/10.1038/nrg3322.
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  - Prasad, Kasavajhala V. S. K., Bao-Hua Song, Carrie Olson-Manning, Jill T. Anderson, Cheng-Ruei Lee, M Eric Schranz, Aaron J. Windsor, et al. “A gain-of-function polymorphism controlling complex traits and fitness in nature.” Science (New York, N.Y.) 337, no. 6098 (August 2012): 1081–84. https://doi.org/10.1126/science.1221636.
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  - Colautti, Robert I., Cheng-Ruei Lee, and Thomas Mitchell-Olds. “Origin, fate, and architecture of ecologically relevant genetic variation.” Current Opinion in Plant Biology 15, no. 2 (April 2012): 199–204. https://doi.org/10.1016/j.pbi.2012.01.016.
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  - Manzaneda, Antonio J., Pedro J. Rey, Jesús M. Bastida, Christopher Weiss-Lehman, Evan Raskin, and Thomas Mitchell-Olds. “Environmental aridity is associated with cytotype segregation and polyploidy occurrence in Brachypodium distachyon (Poaceae).” The New Phytologist 193, no. 3 (February 2012): 797–805. https://doi.org/10.1111/j.1469-8137.2011.03988.x.
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  - Lee, C. R., and T. Mitchell Olds. “Ecological trait divergence confirms niche modeling predictions in ecological speciation of Boechera stricta.” Molecular Ecology, 2012.
  - Yang, R., H. Chen, D. Jarvi, M. Beilstein, J. Grimwood, J. Jenkins, S. Q. Shu, et al. “Distinct Dynamics of Transposable Elements in the Genome Evolution of the Salt-Tolerant Eutrema salsugineum and Related Brassicaceae Species.” Plant Cell, 2012.
  - Rushworth, Catherine A., Bao-Hua Song, Cheng-Ruei Lee, and Thomas Mitchell-Olds. “Boechera, a model system for ecological genomics.” Molecular Ecology 20, no. 23 (December 2011): 4843–57. https://doi.org/10.1111/j.1365-294x.2011.05340.x.
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  - Lee, Cheng-Ruei, and Thomas Mitchell-Olds. “Quantifying effects of environmental and geographical factors on patterns of genetic differentiation.” Molecular Ecology 20, no. 22 (November 2011): 4631–42. https://doi.org/10.1111/j.1365-294x.2011.05310.x.
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  - Brkljacic, Jelena, Erich Grotewold, Randy Scholl, Todd Mockler, David F. Garvin, Philippe Vain, Thomas Brutnell, et al. “Brachypodium as a model for the grasses: today and the future.” Plant Physiology 157, no. 1 (September 2011): 3–13. https://doi.org/10.1104/pp.111.179531.
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  - Wagner, Maggie R., and Thomas Mitchell-Olds. “Repeated phenotypic changes highlight molecular targets of convergent evolution.” Genome Biology 12, no. 8 (August 23, 2011): 124. https://doi.org/10.1186/gb-2011-12-8-124.
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  - Anderson, Jill T., John H. Willis, and Thomas Mitchell-Olds. “Evolutionary genetics of plant adaptation.” Trends in Genetics : Tig 27, no. 7 (July 2011): 258–66. https://doi.org/10.1016/j.tig.2011.04.001.
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  - Anderson, Jill T., and Thomas Mitchell-Olds. “Ecological genetics and genomics of plant defenses: Evidence and approaches.” Functional Ecology 25, no. 2 (April 2011): 312–24. https://doi.org/10.1111/j.1365-2435.2010.01785.x.
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  - Anderson, Jill T., Cheng-Ruei Lee, and Thomas Mitchell-Olds. “Life-history QTLS and natural selection on flowering time in Boechera stricta, a perennial relative of Arabidopsis.” Evolution; International Journal of Organic Evolution 65, no. 3 (March 2011): 771–87. https://doi.org/10.1111/j.1558-5646.2010.01175.x.
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  - Song, Bao-Hua, and Thomas Mitchell-Olds. “Evolutionary and Ecological Genomics of Non-Model Plants.” Journal of Systematics and Evolution 49, no. 1 (January 2011): 17–24. https://doi.org/10.1111/j.1759-6831.2010.00111.x.
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  - Anderson, Jill T., and Thomas Mitchell-Olds. “Beyond QTL cloning.” Plos Genetics 6, no. 11 (November 11, 2010): e1001197. https://doi.org/10.1371/journal.pgen.1001197.
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  - Manzaneda, Antonio J., Kasavajhala V. S. K. Prasad, and Thomas Mitchell-Olds. “Variation and fitness costs for tolerance to different types of herbivore damage in Boechera stricta genotypes with contrasting glucosinolate structures.” The New Phytologist 188, no. 2 (October 2010): 464–77. https://doi.org/10.1111/j.1469-8137.2010.03385.x.
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  - Gossmann, Toni I., Bao-Hua Song, Aaron J. Windsor, Thomas Mitchell-Olds, Christopher J. Dixon, Maxim V. Kapralov, Dmitry A. Filatov, and Adam Eyre-Walker. “Genome wide analyses reveal little evidence for adaptive evolution in many plant species.” Molecular Biology and Evolution 27, no. 8 (August 2010): 1822–32. https://doi.org/10.1093/molbev/msq079.
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  - Heidel, Andrew J., Sebastian E. Ramos-Onsins, Wei-Kuang Wang, Tzen-Yuh Chiang, and Thomas Mitchell-Olds. “Population history in Arabidopsis halleri using multilocus analysis.” Molecular Ecology 19, no. 16 (August 2010): 3364–79. https://doi.org/10.1111/j.1365-294x.2010.04761.x.
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  - Schwartz, C. J., M. R. Doyle, A. J. Manzaneda, P. J. Rey, T. Mitchell-Olds, and R. M. Amasino. “Natural variation of flowering time and vernalization responsiveness in Brachypodium distachyon.” Bioenergy Research 3, no. 1 (February 1, 2010): 38–46. https://doi.org/10.1007/s12155-009-9069-3.
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  - Mitchell-Olds, Thomas. “Complex-trait analysis in plants.” Genome Biology 11, no. 4 (January 2010): 113. https://doi.org/10.1186/gb-2010-11-4-113.
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  - Metcalf, C Jessica E., and Thomas Mitchell-Olds. “Life history in a model system: opening the black box with Arabidopsis thaliana.” Ecology Letters 12, no. 7 (July 2009): 593–600. https://doi.org/10.1111/j.1461-0248.2009.01320.x.
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  - Leinonen, Päivi H., Saskia Sandring, Bénédicte Quilot, Maria J. Clauss, Thomas Mitchell-Olds, Jon Agren, and Outi Savolainen. “Local adaptation in European populations of Arabidopsis lyrata (Brassicaceae).” American Journal of Botany 96, no. 6 (June 2009): 1129–37. https://doi.org/10.3732/ajb.0800080.
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  - Schranz, M. E., A. J. Manzaneda, A. J. Windsor, M. J. Clauss, and T. Mitchell-Olds. “Ecological genomics of Boechera stricta: identification of a QTL controlling the allocation of methionine- vs branched-chain amino acid-derived glucosinolates and levels of insect herbivory.” Heredity 102, no. 5 (May 2009): 465–74. https://doi.org/10.1038/hdy.2009.12.
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  - Song, Bao-Hua, Aaron J. Windsor, Karl J. Schmid, Sebastian Ramos-Onsins, M Eric Schranz, Andrew J. Heidel, and Thomas Mitchell-Olds. “Multilocus patterns of nucleotide diversity, population structure and linkage disequilibrium in Boechera stricta, a wild relative of Arabidopsis.” Genetics 181, no. 3 (March 2009): 1021–33. https://doi.org/10.1534/genetics.108.095364.
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  - Hansen, Bjarne G., Rachel E. Kerwin, James A. Ober, Virginia M. Lambrix, Thomas Mitchell-Olds, Jonathan Gershenzon, Barbara A. Halkier, and Daniel J. Kliebenstein. “A novel 2-oxoacid-dependent dioxygenase involved in the formation of the goiterogenic 2-hydroxybut-3-enyl glucosinolate and generalist insect resistance in Arabidopsis,.” Plant Physiology 148, no. 4 (December 2008): 2096–2108. https://doi.org/10.1104/pp.108.129981.
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  - McKay, John K., James H. Richards, Krishna S. Nemali, Saunak Sen, Thomas Mitchell-Olds, Sandra Boles, Eli A. Stahl, Tierney Wayne, and Thomas E. Juenger. “Genetics of drought adaptation in Arabidopsis thaliana II. QTL analysis of a new mapping population, KAS-1 x TSU-1.” Evolution; International Journal of Organic Evolution 62, no. 12 (December 2008): 3014–26. https://doi.org/10.1111/j.1558-5646.2008.00474.x.
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  - Oyama, R. K., M. J. Clauss, N. Formanová, J. Kroymann, K. J. Schmid, H. Vogel, K. Weniger, A. J. Windsor, and T. Mitchell-Olds. “The shrunken genome of Arabidopsis thaliana.” Plant Systematics and Evolution 273, no. 3–4 (July 1, 2008): 257–71. https://doi.org/10.1007/s00606-008-0017-z.
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  - Benfey, Philip N., and Thomas Mitchell-Olds. “From genotype to phenotype: systems biology meets natural variation.” Science (New York, N.Y.) 320, no. 5875 (April 2008): 495–97. https://doi.org/10.1126/science.1153716.
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  - Ming, Ray, Shaobin Hou, Yun Feng, Qingyi Yu, Alexandre Dionne-Laporte, Jimmy H. Saw, Pavel Senin, et al. “The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus).” Nature 452, no. 7190 (April 2008): 991–96. https://doi.org/10.1038/nature06856.
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  - Mitchell-Olds, T., M. Feder, and G. Wray. “Evolutionary and ecological functional genomics.” Heredity 100, no. 2 (February 2008): 101–2. https://doi.org/10.1038/sj.hdy.6801015.
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  - Wheat, Christopher W., Heiko Vogel, Ute Wittstock, Michael F. Braby, Dessie Underwood, and Thomas Mitchell-Olds. “The genetic basis of a plant-insect coevolutionary key innovation.” Proceedings of the National Academy of Sciences of the United States of America 104, no. 51 (December 11, 2007): 20427–31. https://doi.org/10.1073/pnas.0706229104.
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  - Mitchell-Olds, Thomas, John H. Willis, and David B. Goldstein. “Which evolutionary processes influence natural genetic variation for phenotypic traits?” Nature Reviews. Genetics 8, no. 11 (November 2007): 845–56. https://doi.org/10.1038/nrg2207.
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  - Song, Bao-Hua, and Thomas Mitchell-Olds. “High genetic diversity and population differentiation in Boechera fecunda, a rare relative of Arabidopsis.” Molecular Ecology 16, no. 19 (October 2007): 4079–88. https://doi.org/10.1111/j.1365-294x.2007.03500.x.
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  - Kantama, Laksana, Timothy F. Sharbel, M Eric Schranz, Thomas Mitchell-Olds, Sacco de Vries, and Hans de Jong. “Diploid apomicts of the Boechera holboellii complex display large-scale chromosome substitutions and aberrant chromosomes.” Proceedings of the National Academy of Sciences of the United States of America 104, no. 35 (August 17, 2007): 14026–31. https://doi.org/10.1073/pnas.0706647104.
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  - Ramos-Onsins, Sebastián E., Sylvain Mousset, Thomas Mitchell-Olds, and Wolfgang Stephan. “Population genetic inference using a fixed number of segregating sites: a reassessment.” Genetical Research 89, no. 4 (August 2007): 231–44. https://doi.org/10.1017/s0016672307008877.
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  - Schranz, M. E., A. J. Windsor, B. Song, A. Lawton-Rauh, and T. Mitchell-Olds. “Erratum: Comparative genetic mapping in Boechera stricta, a close relative of arabidopsis (Plant Physiology (2007) 144, (286-298)).” Plant Physiology 144, no. 3 (July 1, 2007): 1690. https://doi.org/10.1104/pp.104.900229.
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  - Pfalz, Marina, Heiko Vogel, Thomas Mitchell-Olds, and Juergen Kroymann. “Mapping of QTL for resistance against the crucifer specialist herbivore Pieris brassicae in a new Arabidopsis inbred line population, Da(1)-12 x Ei-2.” Plos One 2, no. 6 (June 27, 2007): e578. https://doi.org/10.1371/journal.pone.0000578.
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  - Schranz, M Eric, Aaron J. Windsor, Bao-Hua Song, Amy Lawton-Rauh, and Thomas Mitchell-Olds. “Comparative genetic mapping in Boechera stricta, a close relative of Arabidopsis.” Plant Physiology 144, no. 1 (May 2007): 286–98. https://doi.org/10.1104/pp.107.096685.
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  - Schranz, M Eric, Bao-Hua Song, Aaron J. Windsor, and Thomas Mitchell-Olds. “Comparative genomics in the Brassicaceae: a family-wide perspective.” Current Opinion in Plant Biology 10, no. 2 (April 2007): 168–75. https://doi.org/10.1016/j.pbi.2007.01.014.
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  - Ramos-Onsins, Sebastian E., and Thomas Mitchell-Olds. “Mlcoalsim: multilocus coalescent simulations.” Evolutionary Bioinformatics Online 3 (March 2, 2007): 41–44.
  - Vogel, Heiko, Juergen Kroymann, and Thomas Mitchell-Olds. “Different transcript patterns in response to specialist and generalist herbivores in the wild Arabidopsis relative Boechera divaricarpa.” Plos One 2, no. 10 (January 2007): e1081. https://doi.org/10.1371/journal.pone.0001081.
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  - Meaux, Juliette de, A. Pop, and T. Mitchell-Olds. “Cis-regulatory evolution of chalcone-synthase expression in the genus Arabidopsis.” Genetics 174, no. 4 (December 2006): 2181–2202. https://doi.org/10.1534/genetics.106.064543.
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  - Clauss, Maria J., Sylke Dietel, Grit Schubert, and Thomas Mitchell-Olds. “Glucosinolate and trichome defenses in a natural Arabidopsis lyrata population.” Journal of Chemical Ecology 32, no. 11 (November 2006): 2351–73. https://doi.org/10.1007/s10886-006-9150-8.
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  - Schranz, M Eric, Martin A. Lysak, and Thomas Mitchell-Olds. “The ABC's of comparative genomics in the Brassicaceae: building blocks of crucifer genomes.” Trends in Plant Science 11, no. 11 (November 2006): 535–42. https://doi.org/10.1016/j.tplants.2006.09.002.
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  - Clauss, Maria J., and Thomas Mitchell-Olds. “Population genetic structure of Arabidopsis lyrata in Europe.” Molecular Ecology 15, no. 10 (September 2006): 2753–66. https://doi.org/10.1111/j.1365-294x.2006.02973.x.
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  - Heidel, Andrew J., Maria J. Clauss, Juergen Kroymann, Outi Savolainen, and Thomas Mitchell-Olds. “Natural variation in MAM within and between populations of Arabidopsis lyrata determines glucosinolate phenotype.” Genetics 173, no. 3 (July 2006): 1629–36. https://doi.org/10.1534/genetics.106.056986.
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  - Benderoth, Markus, Susanne Textor, Aaron J. Windsor, Thomas Mitchell-Olds, Jonathan Gershenzon, and Juergen Kroymann. “Positive selection driving diversification in plant secondary metabolism.” Proceedings of the National Academy of Sciences of the United States of America 103, no. 24 (June 5, 2006): 9118–23. https://doi.org/10.1073/pnas.0601738103.
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  - Lambrix, V., M. Reichelt, T. Mitchell-Olds, D. J. Kliebenstein, and J. Gershenzon. “Erratum: The Arabidopsis epithiospecifier protein promotes the hydrolysis of glucosinolates to nitriles and influences Trichoplusia ni herbivory (Plant Cell (2001) 13 (2793-2807)).” Plant Cell 18, no. 6 (June 1, 2006). https://doi.org/10.1105/tpc.106.180660.
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  - Lambrix, V., M. Reichelt, T. Mitchell-Olds, D. J. Kliebenstein, and J. Gershenzon. “The Arabidopsis epithiospecifier protein promotes the hydrolysis of glucosinolates to nitriles and influences Trichoplusia ni herbivory (vol 13, pg 2793, 2001).” Plant Cell 18, no. 6 (June 1, 2006): 1537–1537.
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  - Mitchell-Olds, Thomas, and Johanna Schmitt. “Genetic mechanisms and evolutionary significance of natural variation in Arabidopsis.” Nature 441, no. 7096 (June 2006): 947–52. https://doi.org/10.1038/nature04878.
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  - Schranz, M Eric, and Thomas Mitchell-Olds. “Independent ancient polyploidy events in the sister families Brassicaceae and Cleomaceae.” The Plant Cell 18, no. 5 (May 2006): 1152–65. https://doi.org/10.1105/tpc.106.041111.
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  - Knight, Charles A., Heiko Vogel, Juergen Kroymann, Alice Shumate, Hanneke Witsenboer, and Thomas Mitchell-Olds. “Expression profiling and local adaptation of Boechera holboellii populations for water use efficiency across a naturally occurring water stress gradient.” Molecular Ecology 15, no. 5 (April 2006): 1229–37. https://doi.org/10.1111/j.1365-294x.2006.02818.x.
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  - Lee, Carol Eunmi, and Thomas Mitchell-Olds. “Preface to the special issue: ecological and evolutionary genomics of populations in nature.” Molecular Ecology 15, no. 5 (April 2006): 1193–96. https://doi.org/10.1111/j.1365-294x.2006.02945.x.
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  - Windsor, Aaron J., M Eric Schranz, Natasa Formanová, Steffi Gebauer-Jung, John G. Bishop, Domenica Schnabelrauch, Juergen Kroymann, and Thomas Mitchell-Olds. “Partial shotgun sequencing of the Boechera stricta genome reveals extensive microsynteny and promoter conservation with Arabidopsis.” Plant Physiology 140, no. 4 (April 2006): 1169–82. https://doi.org/10.1104/pp.105.073981.
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  - Windsor, Aaron J., and Thomas Mitchell-Olds. “Comparative genomics as a tool for gene discovery.” Current Opinion in Biotechnology 17, no. 2 (April 2006): 161–67. https://doi.org/10.1016/j.copbio.2006.01.007.
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  - Song, Bao-Hua, Maria J. Clauss, Alan Pepper, and Thomas Mitchell-Olds. “Geographic patterns of microsatellite variation in Boechera stricta, a close relative of Arabidopsis.” Molecular Ecology 15, no. 2 (February 2006): 357–69. https://doi.org/10.1111/j.1365-294x.2005.02817.x.
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  - Lee, C. E., and T. Mitchell Olds. “Ecological and evolutionary genomics of populations in nature.” Molecular Ecology 15 (2006): 1193–95.
  - Schranz, M Eric, Laksana Kantama, Hans de Jong, and Thomas Mitchell-Olds. “Asexual reproduction in a close relative of Arabidopsis: a genetic investigation of apomixis in Boechera (Brassicaceae).” The New Phytologist 171, no. 2 (January 2006): 425–38. https://doi.org/10.1111/j.1469-8137.2006.01765.x.
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  - Schranz, M Eric, Christoph Dobes, Marcus A. Koch, and Thomas Mitchell-Olds. “Sexual reproduction, hybridization, apomixis, and polyploidization in the genus Boechera (Brassicaceae).” American Journal of Botany 92, no. 11 (November 2005): 1797–1810. https://doi.org/10.3732/ajb.92.11.1797.
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  - Kliebenstein, Dan J., Juergen Kroymann, and Thomas Mitchell-Olds. “The glucosinolate-myrosinase system in an ecological and evolutionary context.” Current Opinion in Plant Biology 8, no. 3 (June 2005): 264–71. https://doi.org/10.1016/j.pbi.2005.03.002.
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  - Windsor, Aaron J., Michael Reichelt, Antje Figuth, Ales Svatos, Juergen Kroymann, Daniel J. Kliebenstein, Jonathan Gershenzon, and Thomas Mitchell-Olds. “Geographic and evolutionary diversification of glucosinolates among near relatives of Arabidopsis thaliana (Brassicaceae).” Phytochemistry 66, no. 11 (June 2005): 1321–33. https://doi.org/10.1016/j.phytochem.2005.04.016.
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  - Kroymann, Juergen, and Thomas Mitchell-Olds. “Epistasis and balanced polymorphism influencing complex trait variation.” Nature 435, no. 7038 (May 2005): 95–98. https://doi.org/10.1038/nature03480.
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  - Koch, Marcus A., Christoph Dobes, Michaela Matschinger, Walter Bleeker, Johannes Vogel, Markus Kiefer, and Thomas Mitchell-Olds. “Evolution of the trnF(GAA) gene in Arabidopsis relatives and the brassicaceae family: monophyletic origin and subsequent diversification of a plastidic pseudogene.” Molecular Biology and Evolution 22, no. 4 (April 2005): 1032–43. https://doi.org/10.1093/molbev/msi092.
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  - Meaux, Juliette de, Ulrike Goebel, Ana Pop, and Thomas Mitchell-Olds. “Allele-specific assay reveals functional variation in the chalcone synthase promoter of Arabidopsis thaliana that is compatible with neutral evolution.” The Plant Cell 17, no. 3 (March 2005): 676–90. https://doi.org/10.1105/tpc.104.027839.
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  - Schmid, Karl J., Sebastian Ramos-Onsins, Henriette Ringys-Beckstein, Bernd Weisshaar, and Thomas Mitchell-Olds. “A multilocus sequence survey in Arabidopsis thaliana reveals a genome-wide departure from a neutral model of DNA sequence polymorphism.” Genetics 169, no. 3 (March 2005): 1601–15. https://doi.org/10.1534/genetics.104.033795.
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  - Meaux, J. de, U. Goebel, A. Pop, and T. Mitchell Olds. “The potential for adaptive evolution in Arabidopsis thaliana CHS promoter region revealed by an allele-specific functional assay.” Plant Cell 17 (2005): 676–90.
  - Sharbel, T. F., T. Mitchell-Olds, C. Dobes, L. Kantama, and H. de Jong. “Biogeographic distribution of polyploidy and B chromosomes in the apomictic Boechera holboellii complex.” Cytogenetic and Genome Research 109, no. 1–3 (January 2005): 283–92. https://doi.org/10.1159/000082411.
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  - Stranger, Barbara E., and Thomas Mitchell-Olds. “Nucleotide variation at the myrosinase-encoding locus, TGG1, and quantitative myrosinase enzyme activity variation in Arabidopsis thaliana.” Molecular Ecology 14, no. 1 (January 2005): 295–309. https://doi.org/10.1111/j.1365-294x.2004.02403.x.
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  - Dobes, Christoph, Thomas Mitchell-Olds, and Marcus A. Koch. “Intraspecific diversification in North American Boechera stricta (= Arabis drummondii), Boechera xdivaricarpa, and Boechera holboellii (Brassicaceae) inferred from nuclear and chloroplast molecular markers--an integrative approach.” American Journal of Botany 91, no. 12 (December 2004): 2087–2101. https://doi.org/10.3732/ajb.91.12.2087.
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  - Kuittinen, Helmi, Anita A. de Haan, Claus Vogl, Sami Oikarinen, Johanna Leppälä, Marcus Koch, Tom Mitchell-Olds, Charles H. Langley, and Outi Savolainen. “Comparing the linkage maps of the close relatives Arabidopsis lyrata and A. thaliana.” Genetics 168, no. 3 (November 2004): 1575–84. https://doi.org/10.1534/genetics.103.022343.
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  - Ramos-Onsins, S. E., B. E. Stranger, T. Mitchell-Olds, and M. Aguade. “Multilocus analysis of variation and speciation in the closely related species Arabidopsis halleri and A. lyrata (vol 166, pg 373, 2004).” Genetics 167, no. 4 (August 1, 2004): 2143–2143.
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  - Ramos-Onsins, S. E., B. E. Stranger, T. Mitchell-Olds, and M. Aguadé. “Erratum: Multilocus analysis of variation and speciation in the closely related species Arabidopsis halleri and A. lyrata (Genetics 166 (373-388)).” Genetics 167, no. 4 (August 1, 2004).
  - Schein, Manja, Ziheng Yang, Thomas Mitchell-Olds, and Karl J. Schmid. “Rapid evolution of a pollen-specific oleosin-like gene family from Arabidopsis thaliana and closely related species.” Molecular Biology and Evolution 21, no. 4 (April 2004): 659–69. https://doi.org/10.1093/molbev/msh059.
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  - Clauss, M. J., and T. Mitchell-Olds. “Functional divergence in tandemly duplicated Arabidopsis thaliana trypsin inhibitor genes.” Genetics 166, no. 3 (March 2004): 1419–36. https://doi.org/10.1534/genetics.166.3.1419.
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  - Dobes, C. H., T. Mitchell-Olds, and M. A. Koch. “Extensive chloroplast haplotype variation indicates Pleistocene hybridization and radiation of North American Arabis drummondii, A. x divaricarpa, and A. holboellii (Brassicaceae).” Molecular Ecology 13, no. 2 (February 2004): 349–70. https://doi.org/10.1046/j.1365-294x.2003.02064.x.
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  - Kuittinen, T., T. H, A de Haan, C. Vogl, S. Oikarinen, J. Leppälä, M. Koch, T. Mitchell-Olds, C. Langley, and O. Savolainen. “Comparing the maps of close relatives Arabidopsis lyrata and Arabidopsis thaliana.” Genetics 168 (2004): 1575–84.
  - Ramos-Onsins, Sebastián E., Barbara E. Stranger, Thomas Mitchell-Olds, and Montserrat Aguadé. “Multilocus analysis of variation and speciation in the closely related species Arabidopsis halleri and A. lyrata.” Genetics 166, no. 1 (January 2004): 373–88. https://doi.org/10.1534/genetics.166.1.373.
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  - Sharbel, T. F., M. L. Voigt, T. Mitchell-Olds, L. Kantama, and H. de Jong. “Is the aneuploid chromosome in an apomictic Boechera holboellii a genuine B chromosome?” Cytogenetic and Genome Research 106, no. 2–4 (January 2004): 173–83. https://doi.org/10.1159/000079284.
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  - Windsor, A. J., A. M. Shumate, N. Forrnanova, and T. Mitchell-Olds. “ECOLOGICAL GENOMICS OF GLUCOSINOLATES IN RELATIVES OF ARABIDOPSIS.” Acta Physiologiae Plantarum 26, no. 3 (January 1, 2004): 60–60.
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  - Meaux, J. de, and T. Mitchell-Olds. “Evolution of plant resistance at the molecular level: ecological context of species interactions.” Heredity 91, no. 4 (October 2003): 345–52. https://doi.org/10.1038/sj.hdy.6800342.
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  - Törjék, O., D. Berger, R. C. Meyer, C. Müssig, K. J. Schmid, T. Rosleff Sörensen, B. Weisshaar, T. Mitchell-Olds, and T. Altmann. “Establishment of a high-efficiency SNP-based framework marker set for Arabidopsis.” The Plant Journal : For Cell and Molecular Biology 36, no. 1 (October 2003): 122–40. https://doi.org/10.1046/j.1365-313x.2003.01861.x.
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  - Feder, Martin E., and Thomas Mitchell-Olds. “Evolutionary and ecological functional genomics.” Nature Reviews. Genetics 4, no. 8 (August 2003): 651–57. https://doi.org/10.1038/nrg1128.
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  - Schmid, Karl J., Thomas Rosleff Sorensen, Ralf Stracke, Otto Torjek, Thomas Altmann, Tom Mitchell-Olds, and Bernd Weisshaar. “Large-scale identification and analysis of genome-wide single-nucleotide polymorphisms for mapping in Arabidopsis thaliana.” Genome Research 13, no. 6A (June 2003): 1250–57. https://doi.org/10.1101/gr.728603.
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  - Clauss, M. J., and T. Mitchell-Olds. “Population genetics of tandem trypsin inhibitor genes in Arabidopsis species with contrasting ecology and life history.” Molecular Ecology 12, no. 5 (May 2003): 1287–99. https://doi.org/10.1046/j.1365-294x.2003.01832.x.
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  - McKay, J. K., J. H. Richards, and T. Mitchell-Olds. “Genetics of drought adaptation in Arabidopsis thaliana: I. Pleiotropy contributes to genetic correlations among ecological traits.” Molecular Ecology 12, no. 5 (May 2003): 1137–51. https://doi.org/10.1046/j.1365-294x.2003.01833.x.
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  - Koch, Marcus A., Christoph Dobes, and Thomas Mitchell-Olds. “Multiple hybrid formation in natural populations: concerted evolution of the internal transcribed spacer of nuclear ribosomal DNA (ITS) in North American Arabis divaricarpa (Brassicaceae).” Molecular Biology and Evolution 20, no. 3 (March 2003): 338–50. https://doi.org/10.1093/molbev/msg046.
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  - Morin, the SNP workshop, P. A, G. Luikart, R. K. Wayne, and the SNP workshop group. “Applications of SNPs in ecology, evolution, and conservation.” Trends in Ecology and Evolution 19 (2003): 208–16.
  - Kliebenstein, Daniel J., Antje Figuth, and Thomas Mitchell-Olds. “Genetic architecture of plastic methyl jasmonate responses in Arabidopsis thaliana.” Genetics 161, no. 4 (August 2002): 1685–96.
  - Haubold, Bernhard, Jürgen Kroymann, Andreas Ratzka, Thomas Mitchell-Olds, and Thomas Wiehe. “Recombination and gene conversion in a 170-kb genomic region of Arabidopsis thaliana.” Genetics 161, no. 3 (July 2002): 1269–78.
  - Mitchell-Olds, Thomas, and Charles A. Knight. “Evolution. Chaperones as buffering agents?” Science (New York, N.Y.) 296, no. 5577 (June 2002): 2348–49. https://doi.org/10.1126/science.1073846.
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  - Kliebenstein, Daniel, Deana Pedersen, Bridget Barker, and Thomas Mitchell-Olds. “Comparative analysis of quantitative trait loci controlling glucosinolates, myrosinase and insect resistance in Arabidopsis thaliana.” Genetics 161, no. 1 (May 2002): 325–32.
  - Clauss, M. J., H. Cobban, and T. Mitchell-Olds. “Cross-species microsatellite markers for elucidating population genetic structure in Arabidopsis and Arabis (Brassicaeae).” Molecular Ecology 11, no. 3 (March 2002): 591–601. https://doi.org/10.1046/j.0962-1083.2002.01465.x.
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  - Reichelt, Michael, Paul D. Brown, Bernd Schneider, Neil J. Oldham, Einar Stauber, Jim Tokuhisa, Daniel J. Kliebenstein, Thomas Mitchell-Olds, and Jonathan Gershenzon. “Benzoic acid glucosinolate esters and other glucosinolates from Arabidopsis thaliana.” Phytochemistry 59, no. 6 (March 2002): 663–71. https://doi.org/10.1016/s0031-9422(02)00014-6.
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  - Siemens, D. H., S. H. Garner, T. Mitchell-Olds, and R. M. Callaway. “Cost of defense in the context of plant competition: Brassica rapa may grow and defend.” Ecology 83, no. 2 (February 14, 2002): 505–17.
  - Mitchell-Olds, Thomas, and Maria J. Clauss. “Plant evolutionary genomics.” Current Opinion in Plant Biology 5, no. 1 (February 2002): 74–79. https://doi.org/10.1016/s1369-5266(01)00231-x.
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  - Stotz, Henrik U., Thomas Koch, Anja Biedermann, Kerstin Weniger, Wilhelm Boland, and Thomas Mitchell-Olds. “Evidence for regulation of resistance in Arabidopsis to Egyptian cotton worm by salicylic and jasmonic acid signaling pathways.” Planta 214, no. 4 (February 2002): 648–52. https://doi.org/10.1007/s004250100656.
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  - Berger, Susanne, Thomas Mitchell-Olds, and Henrik U. Stotz. “Local and differential control of vegetative storage protein expression in response to herbivore damage in Arabidopsis thaliana.” Physiologia Plantarum 114, no. 1 (January 2002): 85–91. https://doi.org/10.1046/j.0031-9317.2001.1140112.x.
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  - Kuittinen, C. A., C. A. H, M. Aguadé, D. Charlesworth, A de Haan, B. Lauga, T. Mitchell-Olds, et al. “A set of primers for functional biodiversity screening and comparative genetics in Brassicaceae.” Molecular Ecology Notes 2 (2002): 258–62.
  - Lambrix, V., M. Reichelt, T. Mitchell-Olds, D. J. Kliebenstein, and J. Gershenzon. “The Arabidopsis epithiospecifier protein promotes the hydrolysis of glucosinolates to nitriles and influences Trichoplusia ni herbivory.” The Plant Cell 13, no. 12 (December 2001): 2793–2807. https://doi.org/10.1105/tpc.010261.
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  - Mitchell-Olds, T. “Arabidopsis thaliana and its wild relatives: A model system for ecology and evolution.” Trends in Ecology and Evolution 16, no. 12 (December 1, 2001): 693–700. https://doi.org/10.1016/S0169-5347(01)02291-1.
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  - Kroymann, J., S. Textor, J. G. Tokuhisa, K. L. Falk, S. Bartram, J. Gershenzon, and T. Mitchell-Olds. “A gene controlling variation in Arabidopsis glucosinolate composition is part of the methionine chain elongation pathway.” Plant Physiology 127, no. 3 (November 2001): 1077–88. https://doi.org/10.1104/pp.127.3.1077.
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  - Koch, M. A., B. Weisshaar, J. Kroymann, B. Haubold, and T. Mitchell-Olds. “Comparative genomics and regulatory evolution: conservation and function of the Chs and Apetala3 promoters.” Molecular Biology and Evolution 18, no. 10 (October 2001): 1882–91. https://doi.org/10.1093/oxfordjournals.molbev.a003729.
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  - Kliebenstein, D. J., J. Gershenzon, and T. Mitchell-Olds. “Comparative quantitative trait loci mapping of aliphatic, indolic and benzylic glucosinolate production in Arabidopsis thaliana leaves and seeds.” Genetics 159, no. 1 (September 2001): 359–70.
  - Wiehe, T., S. Gebauer-Jung, T. Mitchell-Olds, and R. Guigó. “SGP-1: prediction and validation of homologous genes based on sequence alignments.” Genome Research 11, no. 9 (September 2001): 1574–83. https://doi.org/10.1101/gr.177401.
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  - Sharbel, T. F., and T. Mitchell-Olds. “Recurrent polyploid origins and chloroplast phylogeography in the Arabis holboellii complex (Brassicaceae).” Heredity 87, no. Pt 1 (July 2001): 59–68. https://doi.org/10.1046/j.1365-2540.2001.00908.x.
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  - Kliebenstein, D. J., J. Kroymann, P. Brown, A. Figuth, D. Pedersen, J. Gershenzon, and T. Mitchell-Olds. “Genetic control of natural variation in Arabidopsis glucosinolate accumulation.” Plant Physiology 126, no. 2 (June 2001): 811–25. https://doi.org/10.1104/pp.126.2.811.
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  - Stotz, H. U., B. R. Pittendrigh, J. Kroymann, K. Weniger, J. Fritsche, A. Bauke, and T. Mitchell-Olds. “Induced plant defense responses against chewing insects. Ethylene signaling reduces resistance of arabidopsis against Egyptian cotton worm but not diamondback moth. (vol 124, pg 1007, 2000).” Plant Physiology 125, no. 4 (April 1, 2001): 2203–2203.
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  - Kliebenstein, D. J., V. M. Lambrix, M. Reichelt, J. Gershenzon, and T. Mitchell-Olds. “Gene duplication in the diversification of secondary metabolism: tandem 2-oxoglutarate-dependent dioxygenases control glucosinolate biosynthesis in Arabidopsis.” The Plant Cell 13, no. 3 (March 2001): 681–93. https://doi.org/10.1105/tpc.13.3.681.
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  - Koch, M., B. Haubold, and T. Mitchell-Olds. “Molecular systematics of the Brassicaceae: evidence from coding plastidic matK and nuclear Chs sequences.” American Journal of Botany 88, no. 3 (March 2001): 534–44. https://doi.org/10.2307/2657117.
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  - Stotz, H. U., B. R. Pittendrigh, J. Kroymann, K. Weniger, J. Fritsche, A. Bauke, and T. Mitchell-Olds. “Erratum: Induced plant defense responses against chewing insects. Ethylene signaling reduces resistance of arabidopsis against Egyptian cotton worm but not diamondback moth (Plant Physiology (2000) 124 (1007-1017)).” Plant Physiology 125, no. 4 (January 1, 2001).
  - Sharbel, T. F., B. Haubold, and T. Mitchell-Olds. “Genetic isolation by distance in Arabidopsis thaliana: biogeography and postglacial colonization of Europe.” Molecular Ecology 9, no. 12 (December 2000): 2109–18. https://doi.org/10.1046/j.1365-294x.2000.01122.x.
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  - Stotz, H. U., B. R. Pittendrigh, J. Kroymann, K. Weniger, J. Fritsche, A. Bauke, and T. Mitchell-Olds. “Induced plant defense responses against chewing insects. Ethylene signaling reduces resistance of Arabidopsis against Egyptian cotton worm but not diamondback moth.” Plant Physiology 124, no. 3 (November 2000): 1007–18. https://doi.org/10.1104/pp.124.3.1007.
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  - Koch, M. A., B. Haubold, and T. Mitchell-Olds. “Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae).” Molecular Biology and Evolution 17, no. 10 (October 2000): 1483–98. https://doi.org/10.1093/oxfordjournals.molbev.a026248.
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  - De Quiros, H. C., R. Magrath, D. McCallum, J. Kroymann, D. Scnabelrauch, T. Mitchell-Olds, and R. Mithen. “α-Keto acid elongation and glucosinolate biosynthesis in Arabidopsis thaliana.” Theoretical and Applied Genetics 101, no. 3 (January 1, 2000): 429–37. https://doi.org/10.1007/s001220051500.
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  - Mitchell Olds, T., and J. Bergelson. “Editorial Overview: Genomics and coevolution.” Current Opinion in Plant Biology 3 (2000): 273–76.
  - Stotz, H. U., J. Kroymann, and T. Mitchell-Olds. “Plant-insect interactions.” Current Opinion in Plant Biology 2, no. 4 (August 1999): 268–72. https://doi.org/10.1016/s1369-5266(99)80048-x.
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  - Strauss, S. Y., D. H. Siemens, M. B. Decher, and T. Mitchell-Olds. “Ecological costs of plant resistance to herbivores in the currency of pollination.” Evolution 53, no. 4 (August 1, 1999): 1105–13.
  - Strauss, Sharon Y., David H. Siemens, Meika B. Decher, and Thomas Mitchell-Olds. “ECOLOGICAL COSTS OF PLANT RESISTANCE TO HERBIVORES IN THE CURRENCY OF POLLINATION.” Evolution; International Journal of Organic Evolution 53, no. 4 (August 1999): 1105–13. https://doi.org/10.1111/j.1558-5646.1999.tb04525.x.
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  - Koch, M., J. Bishop, and T. Mitchell-Olds. “Molecular systematics and evolution of Arabidopsis and Arabis.” Plant Biology 1, no. 5 (January 1, 1999): 529–37. https://doi.org/10.1111/j.1438-8677.1999.tb00779.x.
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  - Marler, M., D. Pedersen, T. Mitchell-Olds, and R. M. Callaway. “A polymerase chain reaction method for detecting dwarf mistletoe infection in douglas-fir and western larch.” Canadian Journal of Forest Research 29, no. 9 (January 1, 1999): 1317–21. https://doi.org/10.1139/x99-092.
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  - Mitchell-Olds, T., J. Gershenzon, I. Baldwin, and W. Boland. “Chemical ecology in the molecular era.” Trends in Plant Science 3, no. 9 (September 1, 1998): 362–65. https://doi.org/10.1016/S1360-1385(98)01296-5.
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  - Mitchell-Olds, T., and D. Pedersen. “The molecular basis of quantitative genetic variation in central and secondary metabolism in Arabidopsis.” Genetics 149, no. 2 (June 1998): 739–47.
  - Siemens, D. H., and T. Mitchell-Olds. “Evolution of pest-induced defenses in Brassica plants: Tests of theory.” Ecology 79, no. 2 (January 1, 1998): 632–46.
  - Karowe, D. N., D. H. Seimens, and T. Mitchell-Olds. “Species-specific response of glucosinolate content to elevated atmospheric CO2.” Journal of Chemical Ecology 23, no. 11 (January 1, 1997): 2569–82. https://doi.org/10.1023/B:JOEC.0000006667.81616.18.
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  - Mitchell-Olds, T. “Pleiotropy causes long-term genetic constraints on life-history evolution in Brassica rapa.” Evolution 50, no. 5 (October 1, 1996): 1849–58.
  - Mitchell-Olds, T., and D. Bradley. “Genetics of Brassica rapa. 3. Costs of disease resistance to three fungal pathogens.” Evolution 50, no. 5 (October 1, 1996): 1859–65.
  - Mitchell-Olds, Thomas, and Douglas Bradley. “GENETICS OF BRASSICA RAPA. 3. COSTS OF DISEASE RESISTANCE TO THREE FUNGAL PATHOGENS.” Evolution; International Journal of Organic Evolution 50, no. 5 (October 1996): 1859–65. https://doi.org/10.1111/j.1558-5646.1996.tb03572.x.
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  - Mitchell-Olds, Thomas. “PLEIOTROPY CAUSES LONG-TERM GENETIC CONSTRAINTS ON LIFE-HISTORY EVOLUTION IN BRASSICA RAPA.” Evolution; International Journal of Organic Evolution 50, no. 5 (October 1996): 1849–58. https://doi.org/10.1111/j.1558-5646.1996.tb03571.x.
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  - Mitchell-Olds, T. “Genetic constraints on life-history evolution: Quantitative-trait loci influencing growth and flowering in Arabidopsis thaliana.” Evolution 50, no. 1 (February 1, 1996): 140–45.
  - Mitchell-Olds, Thomas. “GENETIC CONSTRAINTS ON LIFE-HISTORY EVOLUTION: QUANTITATIVE-TRAIT LOCI INFLUENCING GROWTH AND FLOWERING IN ARABIDOPSIS THALIANA.” Evolution; International Journal of Organic Evolution 50, no. 1 (February 1996): 140–45. https://doi.org/10.1111/j.1558-5646.1996.tb04480.x.
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  - Mitchell-Olds, T., D. Siemens, and D. Pedersen. “Physiology and costs of resistance to herbivory and disease in Brassica.” Entomologia Experimentalis Et Applicata 80, no. 1 (January 1, 1996): 231–37. https://doi.org/10.1111/j.1570-7458.1996.tb00925.x.
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  - Siemens, D. H., and T. Mitchell-Olds. “Glucosinolates and Herbivory by Specialists (Coleoptera: Chrysomelidae, Lepidoptera: Plutellidae): Consequences of Concentration and Induced Resistance.” Environmental Entomology 25, no. 6 (January 1, 1996): 1344–53. https://doi.org/10.1093/ee/25.6.1344.
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  - Mitchell-Olds, T., R. V. James, M. J. Palmer, and P. H. Williams. “Genetics of Brassica rapa (syn. campestris). 2. Multiple disease resistance to three fungal pathogens: Peronospora parasitica, Albugo candida and Leptosphaeria maculans.” Heredity 75 ( Pt 4) (October 1995): 362–69. https://doi.org/10.1038/hdy.1995.147.
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  - Mitchell-Olds, T. “The molecular basis of quantitative genetic variation in natural populations.” Trends in Ecology & Evolution 10, no. 8 (August 1995): 324–28. https://doi.org/10.1016/s0169-5347(00)89119-3.
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  - Mitchell-Olds, T. “Interval mapping of viability loci causing heterosis in Arabidopsis.” Genetics 140, no. 3 (July 1995): 1105–9.
  - Nakamura, Robert R., Thomas Mitchell-Olds, Robin S. Manasse, and Denise Lello. “Seed predation, pathogen infection and life-history traits in Brassica rapa.” Oecologia 102, no. 3 (June 1995): 324–28. https://doi.org/10.1007/bf00329799.
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  - Groover, A., M. Devey, T. Fiddler, J. Lee, R. Megraw, T. Mitchel-Olds, B. Sherman, S. Vujcic, C. Williams, and D. Neale. “Identification of quantitative trait loci influencing wood specific gravity in an outbred pedigree of loblolly pine.” Genetics 138, no. 4 (December 1994): 1293–1300.
  - McCall, Claire, Donald M. Waller, and Tom Mitchell-Olds. “EFFECTS OF SERIAL INBREEDING ON FITNESS COMPONENTS IN IMPATIENS CAPENSIS.” Evolution; International Journal of Organic Evolution 48, no. 3 (June 1994): 818–27. https://doi.org/10.1111/j.1558-5646.1994.tb01364.x.
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  - Hamilton, M. B., and T. Mitchell-Olds. “The mating system and relative performance of selfed and outcrossed progeny in Arabis fecunda (Brassicaceae).” American Journal of Botany 81, no. 10 (January 1, 1994): 1252–56. https://doi.org/10.2307/2445400.
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  - Chadchawan, S., J. Bishop, O. P. Thangstad, A. M. Bones, T. Mitchell-Olds, and D. Bradley. “Arabidopsis cDNA sequence encoding myrosinase.” Plant Physiology 103, no. 2 (October 1993): 671. https://doi.org/10.1104/pp.103.2.671.
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  - Machlin, S., T. Mitchell-Olds, and D. Bradley. “Sequence of a Brassica campestris myrosinase gene.” Plant Physiology 102, no. 4 (August 1993): 1359–60. https://doi.org/10.1104/pp.102.4.1359.
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  - Shaw, R. G., and T. Mitchell-Olds. “ANOVA for unbalanced data: an overview.” Ecology 74, no. 6 (January 1, 1993): 1638–45. https://doi.org/10.2307/1939922.
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  - Mitchell-Olds, T. “Does environmental variation maintain genetic variation? A question of scale.” Trends in Ecology & Evolution 7, no. 12 (December 1992): 397–98. https://doi.org/10.1016/0169-5347(92)90017-6.
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  - Leeper, D., D. Pavek, R. Walsh, and T. Mitchell Olds. “Management of Arabis fecunda, a threatened plant.” Northwest Environmental Journal 8 (1992): 200–201.
  - Pavek, D., and T. Mitchell Olds. “Genetic diversity in plant species in Glacier National Park.” Northwest Environmental Journal 8 (1992): 181–83.
  - Dorn, Lisa A., and Thomas Mitchell-Olds. “GENETICS OF BRASSICA CAMPESTRIS. 1. GENETIC CONSTRAINTS ON EVOLUTION OF LIFE-HISTORY CHARACTERS.” Evolution; International Journal of Organic Evolution 45, no. 2 (March 1991): 371–79. https://doi.org/10.1111/j.1558-5646.1991.tb04411.x.
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  - McCall, C., T. Mitchell-Olds, and D. M. Waller. “Distance between mates affects seedling characters in a population of Impatiens capensis (Balsaminaceae).” American Journal of Botany 78, no. 7 (January 1, 1991): 964–70. https://doi.org/10.2307/2445175.
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  - Mitchell-Olds, Thomas, and Ruth G. Shaw. “COMMENTS ON THE CAUSES OF NATURAL SELECTION.” Evolution; International Journal of Organic Evolution 44, no. 8 (December 1990): 2158. https://doi.org/10.1111/j.1558-5646.1990.tb04321.x.
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  - Mitchell-Olds, T., and J. Bergelson. “Statistical genetics of an annual plant, Impatiens capensis. I. Genetic basis of quantitative variation.” Genetics 124, no. 2 (February 1990): 407–15.
  - Mitchell-Olds, T., and J. Bergelson. “Statistical genetics of an annual plant, Impatiens capensis. II. Natural selection.” Genetics 124, no. 2 (February 1990): 416–21.
  - McCall, Claire, Thomas Mitchell-Olds, and Donald M. Waller. “FITNESS CONSEQUENCES OF OUTCROSSING IN IMPATIENS CAPENSIS: TESTS OF THE FREQUENCY-DEPENDENT AND SIB-COMPETITION MODELS.” Evolution; International Journal of Organic Evolution 43, no. 5 (August 1989): 1075–84. https://doi.org/10.1111/j.1558-5646.1989.tb02552.x.
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  - Mitchell-Olds, Thomas, and Ruth G. Shaw. “REGRESSION ANALYSIS OF NATURAL SELECTION: STATISTICAL INFERENCE AND BIOLOGICAL INTERPRETATION.” Evolution; International Journal of Organic Evolution 41, no. 6 (November 1987): 1149–61. https://doi.org/10.1111/j.1558-5646.1987.tb02457.x.
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  - Dixon, P. M., J. Weiner, T. Mitchell Olds, and R. Woodley. “Bootstrapping the Gini coefficient of inequality.” Ecology 68 (1987): 1548–51.
  - Mitchell-Olds, T. “Analysis of local variation in plant size.” Ecology 68, no. 1 (January 1, 1987): 82–87. https://doi.org/10.2307/1938807.
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  - Mitchell Olds, T. “Discussion of C. F. J. Wu's "Jackknife, bootstrap, and other resampling methods in regression analysis".” Ann. Statis. 14 (1986): 1316–18.
  - Mitchell Olds, T., and J. J. Rutledge. “Quantitative genetics in natural plant populations: A review of the theory.” American Naturalist 127 (1986): 379–402.
  - Mitchell Olds, T., and R. P. Guries. “Genetic load and heterozygosity in the Pinaceae.” Can. J. Genet. Cytol. 28 (1986): 942–46.
  - Mitchell-Olds, Thomas. “QUANTITATIVE GENETICS OF SURVIVAL AND GROWTH IN IMPATIENS CAPENSIS.” Evolution; International Journal of Organic Evolution 40, no. 1 (January 1986): 107–16. https://doi.org/10.1111/j.1558-5646.1986.tb05722.x.
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  - MITCHELL-OLDS, T. “Relative performance of selfed and outcrossed progeny in Impatiens capensis.” Evolution 39 (1985): 533–44. https://doi.org/10.2307/2408651.
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  - Charnov, E. L., J. J. Bull, and S. T. Mitchell Olds. “A note on sex and life histories.” American Naturalist 117 (1981): 814–18.
  - Wagner, M. R., D. S. Lundberg, T. G. del Rio, S. G. Tringe, J. L. Dangl, and T. Mitchell-Olds. “Age, genotype, and environment shape the root and leaf microbiomes of a wild perennial plant,” n.d.
- Book Sections
  - Voigt, M. L., M. Melzer, T. Rutten, T. Mitchell-Olds, and T. F. Sharbel. “Gametogenesis in the apomictic Boechera holboellii complex: the male perspective.” In Apomixis: Evolution, Mechanisms and Perspectives, edited by E. Horandl, U. Grossniklaus, P. van Dijk, and T. F. Sharbel. International Association for Plant Taxonomy - Koeltz Scientific Books, 2007.
  - Mitchell-Olds, T., I. Al-Shehbaz, M. Koch, and T. Sharbel. “Crucifer Evolution in the Post-Genomic Era.” In Diversity and Evolution of Plants - Genotype and Phenotype Variation in Higher Plants, edited by R. Henry, 119–37. CABI press, 2005.
  - Gurganus, M., and T. Mitchell-Olds. “Quantitative Trait Loci and Developmental Plasticity.” In Plant Evolutionary Genetics and the Biology of Weeds, edited by B. A. Schaal, T. Y. Chiang, and C. H. Chou, 77–100. Ch-Chi, Taiwan: Endemic Species Research Institute, 2004.
  - Kroymann, J., and T. Mitchell-Olds. “Function and evolution of an Arabidopsis insect resistance QTL.” In Biology of Molecular Plant-Microbe Interactions, edited by B. Lugtenberg, I. Tikhonovich, and N. Provprov, 4:259–62. . International Society of Molecular Plant Microbe Interactions, APS Press, 2003.
- Conference Papers
  - Anderson, Jill T., David W. Inouye, Amy M. McKinney, Robert I. Colautti, and Tom Mitchell-Olds. “Phenotypic plasticity and adaptive evolution contribute to advancing flowering phenology in response to climate change.” In Proceedings. Biological Sciences, 279:3843–52, 2012. https://doi.org/10.1098/rspb.2012.1051.
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  - Wittstock, Ute, Niels Agerbirk, Einar J. Stauber, Carl Erik Olsen, Michael Hippler, Thomas Mitchell-Olds, Jonathan Gershenzon, and Heiko Vogel. “Successful herbivore attack due to metabolic diversion of a plant chemical defense.” In Proceedings of the National Academy of Sciences of the United States of America, 101:4859–64, 2004. https://doi.org/10.1073/pnas.0308007101.
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  - Kroymann, Juergen, Susanne Donnerhacke, Domenica Schnabelrauch, and Thomas Mitchell-Olds. “Evolutionary dynamics of an Arabidopsis insect resistance quantitative trait locus.” In Proceedings of the National Academy of Sciences of the United States of America, 100 Suppl 2:14587–92, 2003. https://doi.org/10.1073/pnas.1734046100.
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  - Ratzka, Andreas, Heiko Vogel, Daniel J. Kliebenstein, Thomas Mitchell-Olds, and Juergen Kroymann. “Disarming the mustard oil bomb.” In Proceedings of the National Academy of Sciences of the United States of America, 99:11223–28, 2002. https://doi.org/10.1073/pnas.172112899.
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  - McKay, J. K., J. G. Bishop, J. Z. Lin, J. H. Richards, A. Sala, and T. Mitchell-Olds. “Local adaptation across a climatic gradient despite small effective population size in the rare sapphire rockcress.” In Proceedings. Biological Sciences, 268:1715–21, 2001. https://doi.org/10.1098/rspb.2001.1715.
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  - Bishop, J. G., A. M. Dean, and T. Mitchell-Olds. “Rapid evolution in plant chitinases: molecular targets of selection in plant-pathogen coevolution.” In Proceedings of the National Academy of Sciences of the United States of America, 97:5322–27, 2000. https://doi.org/10.1073/pnas.97.10.5322.
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  - Stotz, H., J. Kroymann, M. Tobler, and T. Mitchell-Olds. “Systematic genetic and molecular analysis of insect resistance in Arabidopsis.” In Biology of Plant Microbe Interactions, Vol 2, edited by J. G. M. DeWit, T. Bisseling, and W. J. Stiekema, 373–77. INTERNATIONAL SOC MOLECULAR PLANT-MICROBE INTERACTIONS, 2000.
    Link to Item
  - Mitchell-Olds, T. “Genetics and evolution of insect resistance in Arabidopsis.” In Insect Plant Interactions and Inducible Plant Defense, edited by D. J. Chadwick, 239–48. London: Novartis Foundation, 1999.
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  - Mitchell-Olds, T. “Quantitative genetic changes in small populations.” In Proceedings of the Fourth International Congress of Systematic and Evolutionary Biology, 634–38. Portland, OR: Dioscorides Press, 1991.
Teaching & Mentoring
Recent Courses
- BIOLOGY 304: Biological Data Analysis 2020
- BIOLOGY 293: Research Independent Study 2019
- BIOLOGY 493: Research Independent Study 2019
- BIOLOGY 790S: Special Topics Seminar 2019
- BIOLOGY 792: Research 2018
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