Scholars@Duke

• Background
• 

  Education, Training, & Certifications

  • Ph.D., University of North Carolina at Chapel Hill 2006
• Research
• 

  Selected Grants

  • Identification of Novel Bioactive Lipid Metabolites for Predicting Liver-related Outcomes in Persons Co-Infected with HIV and HCV awarded by National Institutes of Health 2017 - 2022
  • Ex vivo metabolomic profiling of statin-induced myopathy awarded by  American Heart Association 2017 - 2019
  • Abbott Diagnostics Collaborative Sponsored Research Agreement awarded by Abbott Laboratories 2016 - 2019
  • Sex and APOE genotype interact to alter immune regulated metabolism in AD awarded by National Institutes of Health 2017 - 2019
  • Thermo Lumos Tribrid High-Resolution Accurate-Mass Tandem Mass Spectrometer awarded by National Institutes of Health 2018 - 2019
  • Immune-based nutrient deprivation and neurodegenerative disease awarded by National Institutes of Health 2013 - 2019
  • Probing the Role of Mitochondrial Short-Chain Carbon Homeostasis in the Hypertrophied and Failing Heart awarded by University of Pennsylvania 2017 - 2019
  • Probing the role of Mitochondrial Short-Chain Carbon Homeostasis in the Hypertrophied and Failing Heart awarded by Sanford-Burnham Medical Research Institute 2017
  • Role of SUMO Conjugation in Ischemia: Significance, Mechanisms and Pathways awarded by National Institutes of Health 2012 - 2017
  • Proteomics of flavorings-induced airway disease awarded by Centers for Disease Control and Prevention 2014 - 2016
  • Instrumentation for Quantitative Phosphoproteomics and Acetylomics awarded by National Institutes of Health 2014 - 2015
  • S-nitrosothiol-regulated pathways in acute lung injury awarded by National Institutes of Health 2010 - 2013
  • Quantitative and Qualitative Differential Expression Proteomics awarded by National Institutes of Health 2010 - 2011
• Publications & Artistic Works
• 

  Selected Publications

  • Academic Articles

    • MahmoudianDehkordi, S, Arnold, M, Nho, K, Ahmad, S, Jia, W, Xie, G, Louie, G, Kueider-Paisley, A, Moseley, MA, Thompson, JW, St John Williams, L, Tenenbaum, JD, Blach, C, Baillie, R, Han, X, Bhattacharyya, S, Toledo, JB, Schafferer, S, Klein, S, Koal, T, Risacher, SL, Kling, MA, Motsinger-Reif, A, Rotroff, DM, Jack, J, Hankemeier, T, Bennett, DA, De Jager, PL, Trojanowski, JQ, Shaw, LM, Weiner, MW, Doraiswamy, PM, van Duijn, CM, Saykin, AJ, Kastenmüller, G, Kaddurah-Daouk, R, and Alzheimer's Disease Neuroimaging Initiative and the Alzheimer Disease Metabolomics Consortium, . "Altered bile acid profile associates with cognitive impairment in Alzheimer's disease-An emerging role for gut microbiome." Alzheimer'S & Dementia : the Journal of the Alzheimer'S Association 15, no. 1 (January 2019): 76-92.  Full Text  Open Access Copy
    • Hardison, RL, Heimlich, DR, Harrison, A, Beatty, WL, Rains, S, Moseley, MA, Thompson, JW, Justice, SS, and Mason, KM. "Erratum for Hardison et al., "Transient Nutrient Deprivation Promotes Macropinocytosis-Dependent Intracellular Bacterial Community Development"." Msphere 3, no. 5 (October 31, 2018).  Full Text
    • Mabe, NW, Fox, DB, Lupo, R, Decker, AE, Phelps, SN, Thompson, JW, and Alvarez, JV. "Epigenetic silencing of tumor suppressor Par-4 promotes chemoresistance in recurrent breast cancer." The Journal of Clinical Investigation 128, no. 10 (October 2018): 4413-4428.  Full Text
    • Hardison, RL, Heimlich, DR, Harrison, A, Beatty, WL, Rains, S, Moseley, MA, Thompson, JW, Justice, SS, and Mason, KM. "Transient Nutrient Deprivation Promotes Macropinocytosis-Dependent Intracellular Bacterial Community Development." Msphere 3, no. 5 (September 12, 2018).  Full Text
    • Yuan, L, Zhai, L, Qian, L, Huang, D, Ding, Y, Xiang, H, Liu, X, Thompson, JW, Liu, J, He, Y-H, Chen, X-Q, Hu, J, Kong, Q-P, Tan, M, and Wang, X-F. "Switching off IMMP2L signaling drives senescence via simultaneous metabolic alteration and blockage of cell death." Cell Research 28, no. 6 (June 2018): 625-643.  Full Text
    • Juvvadi, PR, Moseley, MA, Hughes, CJ, Soderblom, EJ, Lennon, S, Perkins, SR, Thompson, JW, Geromanos, SJ, Wildgoose, J, Richardson, K, Langridge, JI, Vissers, JPC, and Steinbach, WJ. "Scanning Quadrupole Data-Independent Acquisition, Part B: Application to the Analysis of the Calcineurin-Interacting Proteins during Treatment of Aspergillus fumigatus with Azole and Echinocandin Antifungal Drugs." Journal of Proteome Research 17, no. 2 (February 2018): 780-793.  Full Text
    • Moseley, MA, Hughes, CJ, Juvvadi, PR, Soderblom, EJ, Lennon, S, Perkins, SR, Thompson, JW, Steinbach, WJ, Geromanos, SJ, Wildgoose, J, Langridge, JI, Richardson, K, and Vissers, JPC. "Scanning Quadrupole Data-Independent Acquisition, Part A: Qualitative and Quantitative Characterization." Journal of Proteome Research 17, no. 2 (February 2018): 770-779.  Full Text
    • Bowden, JA, Heckert, A, Ulmer, CZ, Jones, CM, Koelmel, JP, Abdullah, L, Ahonen, L, Alnouti, Y, Armando, AM, Asara, JM, Bamba, T, Barr, JR, Bergquist, J, Borchers, CH, Brandsma, J, Breitkopf, SB, Cajka, T, Cazenave-Gassiot, A, Checa, A, Cinel, MA, Colas, RA, Cremers, S, Dennis, EA, Evans, JE, Fauland, A, Fiehn, O, Gardner, MS, Garrett, TJ, Gotlinger, KH, Han, J, Huang, Y, Neo, AH, Hyötyläinen, T, Izumi, Y, Jiang, H, Jiang, H, Jiang, J, Kachman, M, Kiyonami, R, Klavins, K, Klose, C, Köfeler, HC, Kolmert, J, Koal, T, Koster, G, Kuklenyik, Z, Kurland, IJ, Leadley, M, Lin, K, Maddipati, KR, McDougall, D, Meikle, PJ, Mellett, NA, Monnin, C, Moseley, MA, Nandakumar, R, Oresic, M, Patterson, R, Peake, D, Pierce, JS, Post, M, Postle, AD, Pugh, R, Qiu, Y, Quehenberger, O, Ramrup, P, Rees, J, Rembiesa, B, Reynaud, D, Roth, MR, Sales, S, Schuhmann, K, Schwartzman, ML, Serhan, CN, Shevchenko, A, Somerville, SE, St John-Williams, L, Surma, MA, Takeda, H, Thakare, R, Thompson, JW, Torta, F, Triebl, A, Trötzmüller, M, Ubhayasekera, SJK, Vuckovic, D, Weir, JM, Welti, R, Wenk, MR, Wheelock, CE, Yao, L, Yuan, M, Zhao, XH, and Zhou, S. "Harmonizing lipidomics: NIST interlaboratory comparison exercise for lipidomics using SRM 1950-Metabolites in Frozen Human Plasma." Journal of Lipid Research 58, no. 12 (December 2017): 2275-2288.  Full Text
    • St John-Williams, L, Blach, C, Toledo, JB, Rotroff, DM, Kim, S, Klavins, K, Baillie, R, Han, X, Mahmoudiandehkordi, S, Jack, J, Massaro, TJ, Lucas, JE, Louie, G, Motsinger-Reif, AA, Risacher, SL, Alzheimer’s Disease Neuroimaging Initiative, , Alzheimer’s Disease Metabolomics Consortium, , Saykin, AJ, Kastenmüller, G, Arnold, M, Koal, T, Moseley, MA, Mangravite, LM, Peters, MA, Tenenbaum, JD, Thompson, JW, and Kaddurah-Daouk, R. "Targeted metabolomics and medication classification data from participants in the ADNI1 cohort." Scientific data 4 (October 17, 2017): 170140-.  Full Text
    • Baek, AE, Yu, Y-RA, He, S, Wardell, SE, Chang, C-Y, Kwon, S, Pillai, RV, McDowell, HB, Thompson, JW, Dubois, LG, Sullivan, PM, Kemper, JK, Gunn, MD, McDonnell, DP, and Nelson, ER. "The cholesterol metabolite 27 hydroxycholesterol facilitates breast cancer metastasis through its actions on immune cells." Nature Communications 8, no. 1 (October 11, 2017): 864-null.  Full Text
    • Banks, CJ, Rodriguez, NW, Gashler, KR, Pandya, RR, Mortenson, JB, Whited, MD, Soderblom, EJ, Thompson, JW, Moseley, MA, Reddi, AR, Tessem, JS, Torres, MP, Bikman, BT, and Andersen, JL. "Acylation of Superoxide Dismutase 1 (SOD1) at K122 Governs SOD1-Mediated Inhibition of Mitochondrial Respiration." Molecular and Cellular Biology 37, no. 20 (October 2017).  Full Text
    • Toledo, JB, Arnold, M, Kastenmüller, G, Chang, R, Baillie, RA, Han, X, Thambisetty, M, Tenenbaum, JD, Suhre, K, Thompson, JW, John-Williams, LS, MahmoudianDehkordi, S, Rotroff, DM, Jack, JR, Motsinger-Reif, A, Risacher, SL, Blach, C, Lucas, JE, Massaro, T, Louie, G, Zhu, H, Dallmann, G, Klavins, K, Koal, T, Kim, S, Nho, K, Shen, L, Casanova, R, Varma, S, Legido-Quigley, C, Moseley, MA, Zhu, K, Henrion, MYR, van der Lee, SJ, Harms, AC, Demirkan, A, Hankemeier, T, van Duijn, CM, Trojanowski, JQ, Shaw, LM, Saykin, AJ, Weiner, MW, Doraiswamy, PM, Kaddurah-Daouk, R, and Alzheimer's Disease Neuroimaging Initiative and the Alzheimer Disease Metabolomics Consortium, . "Metabolic network failures in Alzheimer's disease: A biochemical road map." Alzheimer'S & Dementia : the Journal of the Alzheimer'S Association 13, no. 9 (September 2017): 965-984.  Full Text
    • Kimbung, S, Chang, C-Y, Bendahl, P-O, Dubois, L, Thompson, JW, McDonnell, DP, and Borgquist, S. "Impact of 27-hydroxylase (CYP27A1) and 27-hydroxycholesterol in breast cancer." Endocrine-related cancer 24, no. 7 (July 2017): 339-349.  Full Text
    • Alfaqih, MA, Nelson, ER, Liu, W, Safi, R, Jasper, JS, Macias, E, Geradts, J, Thompson, JW, Dubois, LG, Freeman, MR, Chang, C-Y, Chi, J-T, McDonnell, DP, and Freedland, SJ. "CYP27A1 Loss Dysregulates Cholesterol Homeostasis in Prostate Cancer." Cancer Research 77, no. 7 (April 2017): 1662-1673.  Full Text
    • Anderson, KA, Huynh, FK, Fisher-Wellman, K, Stuart, JD, Peterson, BS, Douros, JD, Wagner, GR, Thompson, JW, Madsen, AS, Green, MF, Sivley, RM, Ilkayeva, OR, Stevens, RD, Backos, DS, Capra, JA, Olsen, CA, Campbell, JE, Muoio, DM, Grimsrud, PA, and Hirschey, MD. "SIRT4 Is a Lysine Deacylase that Controls Leucine Metabolism and Insulin Secretion." Cell Metabolism 25, no. 4 (April 2017): 838-855.e15.  Full Text
    • Wagner, GR, Bhatt, DP, O'Connell, TM, Thompson, JW, Dubois, LG, Backos, DS, Yang, H, Mitchell, GA, Ilkayeva, OR, Stevens, RD, Grimsrud, PA, and Hirschey, MD. "A Class of Reactive Acyl-CoA Species Reveals the Non-enzymatic Origins of Protein Acylation." Cell metabolism 25, no. 4 (April 2017): 823-837.e8.  Full Text
    • Wang, L, Ko, ER, Gilchrist, JJ, Pittman, KJ, Rautanen, A, Pirinen, M, Thompson, JW, Dubois, LG, Langley, RJ, Jaslow, SL, Salinas, RE, Rouse, DC, Moseley, MA, Mwarumba, S, Njuguna, P, Mturi, N, Wellcome Trust Case Control Consortium 2, , Kenyan Bacteraemia Study Group, , Williams, TN, Scott, JAG, Hill, AVS, Woods, CW, Ginsburg, GS, Tsalik, EL, and Ko, DC. "Human genetic and metabolite variation reveals that methylthioadenosine is a prognostic biomarker and an inflammatory regulator in sepsis." Science Advances 3, no. 3 (March 8, 2017): e1602096-null.  Full Text  Open Access Copy
    • Burke, TW, Henao, R, Soderblom, E, Tsalik, EL, Thompson, JW, McClain, MT, Nichols, M, Nicholson, BP, Veldman, T, Lucas, JE, Moseley, MA, Turner, RB, Lambkin-Williams, R, Hero, AO, Woods, CW, and Ginsburg, GS. "Nasopharyngeal Protein Biomarkers of Acute Respiratory Virus Infection." Ebiomedicine 17 (March 2017): 172-181.  Full Text
    • Foster, MW, Gwinn, WM, Kelly, FL, Brass, DM, Valente, AM, Moseley, MA, Thompson, JW, Morgan, DL, and Palmer, SM. "Proteomic Analysis of Primary Human Airway Epithelial Cells Exposed to the Respiratory Toxicant Diacetyl." Journal of Proteome Research 16, no. 2 (February 2017): 538-549.  Full Text
    • Feger, BJ, Thompson, JW, Dubois, LG, Kommaddi, RP, Foster, MW, Mishra, R, Shenoy, SK, Shibata, Y, Kidane, YH, Moseley, MA, Carnell, LS, and Bowles, DE. "Microgravity induces proteomics changes involved in endoplasmic reticulum stress and mitochondrial protection." Scientific Reports 6 (September 27, 2016): 34091-null.  Full Text  Open Access Copy
    • Peterson, CT, Lucas, J, John-Williams, LS, Thompson, JW, Moseley, MA, Patel, S, Peterson, SN, Porter, V, Schadt, EE, Mills, PJ, Tanzi, RE, Doraiswamy, PM, and Chopra, D. "Identification of Altered Metabolomic Profiles Following a Panchakarma-based Ayurvedic Intervention in Healthy Subjects: The Self-Directed Biological Transformation Initiative (SBTI)." Scientific Reports 6 (September 9, 2016): 32609-null.  Full Text
    • Alwarawrah, Y, Hughes, P, Loiselle, D, Carlson, DA, Darr, DB, Jordan, JL, Xiong, J, Hunter, LM, Dubois, LG, Thompson, JW, Kulkarni, MM, Ratcliff, AN, Kwiek, JJ, and Haystead, TAJ. "Fasnall, a Selective FASN Inhibitor, Shows Potent Anti-tumor Activity in the MMTV-Neu Model of HER2(+) Breast Cancer." Cell Chemical Biology 23, no. 6 (June 2, 2016): 678-688.  Full Text
    • Michelotti, GA, Tucker, A, Swiderska-Syn, M, Machado, MV, Choi, SS, Kruger, L, Soderblom, E, Thompson, JW, Mayer-Salman, M, Himburg, HA, Moylan, CA, Guy, CD, Garman, KS, Premont, RT, Chute, JP, and Diehl, AM. "Pleiotrophin regulates the ductular reaction by controlling the migration of cells in liver progenitor niches." Gut 65, no. 4 (April 2016): 683-692.  Full Text  Open Access Copy
    • Harrison, A, Dubois, LG, St John-Williams, L, Moseley, MA, Hardison, RL, Heimlich, DR, Stoddard, A, Kerschner, JE, Justice, SS, Thompson, JW, and Mason, KM. "Comprehensive Proteomic and Metabolomic Signatures of Nontypeable Haemophilus influenzae-Induced Acute Otitis Media Reveal Bacterial Aerobic Respiration in an Immunosuppressed Environment." Molecular & Cellular Proteomics : Mcp 15, no. 3 (March 2016): 1117-1138.  Full Text
    • Davies, MN, Kjalarsdottir, L, Thompson, JW, Dubois, LG, Stevens, RD, Ilkayeva, OR, Brosnan, MJ, Rolph, TP, Grimsrud, PA, and Muoio, DM. "The Acetyl Group Buffering Action of Carnitine Acetyltransferase Offsets Macronutrient-Induced Lysine Acetylation of Mitochondrial Proteins." Cell reports 14, no. 2 (January 2016): 243-254.  Full Text
    • Bennett, KL, Wang, X, Bystrom, CE, Chambers, MC, Andacht, TM, Dangott, LJ, Elortza, F, Leszyk, J, Molina, H, Moritz, RL, Phinney, BS, Thompson, JW, Bunger, MK, and Tabb, DL. "The 2012/2013 ABRF Proteomic Research Group Study: Assessing Longitudinal Intralaboratory Variability in Routine Peptide Liquid Chromatography Tandem Mass Spectrometry Analyses." Molecular & Cellular Proteomics : Mcp 14, no. 12 (December 2015): 3299-3309.  Full Text
    • Figueiredo-Freitas, C, Dulce, RA, Foster, MW, Liang, J, Yamashita, AMS, Lima-Rosa, FL, Thompson, JW, Moseley, MA, Hare, JM, Nogueira, L, Sorenson, MM, and Pinto, JR. "S-Nitrosylation of Sarcomeric Proteins Depresses Myofilament Ca2+)Sensitivity in Intact Cardiomyocytes." Antioxidants & Redox Signaling 23, no. 13 (November 2015): 1017-1034.  Full Text
    • Vermulst, M, Denney, AS, Lang, MJ, Hung, C-W, Moore, S, Moseley, MA, Thompson, JW, Madden, V, Gauer, J, Wolfe, KJ, Summers, DW, Schleit, J, Sutphin, GL, Haroon, S, Holczbauer, A, Caine, J, Jorgenson, J, Cyr, D, Kaeberlein, M, Strathern, JN, Duncan, MC, and Erie, DA. "Transcription errors induce proteotoxic stress and shorten cellular lifespan." Nature Communications 6 (August 25, 2015): 8065-null.  Full Text
    • Priola, Ginna M., Matthew W. Foster, Allison M. Deal, Brenna M. Richardson, J Will Thompson, and Julie Blatt. “Cerebrospinal fluid proteomics in children during induction for acute lymphoblastic leukemia: A pilot study..” Pediatric Blood & Cancer 62, no. 7 (July 2015): 1190–94. https://doi.org/10.1002/pbc.25420.
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    • Mortenson, JB, Heppler, LN, Banks, CJ, Weerasekara, VK, Whited, MD, Piccolo, SR, Johnson, WE, Thompson, JW, and Andersen, JL. "Histone deacetylase 6 (HDAC6) promotes the pro-survival activity of 14-3-3ζ via deacetylation of lysines within the 14-3-3ζ binding pocket." The Journal of Biological Chemistry 290, no. 20 (May 2015): 12487-12496.  Full Text
    • Tang, X, Keenan, MM, Wu, J, Lin, C-A, Dubois, L, Thompson, JW, Freedland, SJ, Murphy, SK, and Chi, J-T. "Comprehensive profiling of amino acid response uncovers unique methionine-deprived response dependent on intact creatine biosynthesis." Plos Genetics 11, no. 4 (April 7, 2015): e1005158-null.  Full Text
    • Foster, MW, Morrison, LD, Todd, JL, Snyder, LD, Thompson, JW, Soderblom, EJ, Plonk, K, Weinhold, KJ, Townsend, R, Minnich, A, and Moseley, MA. "Quantitative proteomics of bronchoalveolar lavage fluid in idiopathic pulmonary fibrosis." Journal of Proteome Research 14, no. 2 (February 2015): 1238-1249.  Full Text
    • Foltz, E, Azad, S, Everett, ML, Holzknecht, ZE, Sanders, NL, Thompson, JW, Dubois, LG, Parker, W, Keshavjee, S, Palmer, SM, Davis, RD, and Lin, SS. "An assessment of human gastric fluid composition as a function of PPI usage." Physiological reports 3, no. 1 (January 27, 2015).  Full Text
    • Paglia, G, Angel, P, Williams, JP, Richardson, K, Olivos, HJ, Thompson, JW, Menikarachchi, L, Lai, S, Walsh, C, Moseley, A, Plumb, RS, Grant, DF, Palsson, BO, Langridge, J, Geromanos, S, and Astarita, G. "Ion mobility-derived collision cross section as an additional measure for lipid fingerprinting and identification." Analytical Chemistry 87, no. 2 (January 2015): 1137-1144.  Full Text
    • Saka, HA, Thompson, JW, Chen, Y-S, Dubois, LG, Haas, JT, Moseley, A, and Valdivia, RH. "Chlamydia trachomatis Infection Leads to Defined Alterations to the Lipid Droplet Proteome in Epithelial Cells." Plos One 10, no. 4 (January 2015): e0124630-null.  Full Text  Open Access Copy
    • Pfenning, AR, Hara, E, Whitney, O, Rivas, MV, Wang, R, Roulhac, PL, Howard, JT, Wirthlin, M, Lovell, PV, Ganapathy, G, Mouncastle, J, Moseley, MA, Thompson, JW, Soderblom, EJ, Iriki, A, Kato, M, Gilbert, MTP, Zhang, G, Bakken, T, Bongaarts, A, Bernard, A, Lein, E, Mello, CV, Hartemink, AJ, and Jarvis, ED. "Convergent transcriptional specializations in the brains of humans and song-learning birds." Science (New York, N.Y.) 346, no. 6215 (December 2014): 1256846-null.  Full Text  Open Access Copy
    • Weerasekara, VK, Panek, DJ, Broadbent, DG, Mortenson, JB, Mathis, AD, Logan, GN, Prince, JT, Thomson, DM, Thompson, JW, and Andersen, JL. "Metabolic-stress-induced rearrangement of the 14-3-3ζ interactome promotes autophagy via a ULK1- and AMPK-regulated 14-3-3ζ interaction with phosphorylated Atg9." Molecular and Cellular Biology 34, no. 24 (December 2014): 4379-4388.  Full Text
    • Mehta, K, Soderblom, EJ, Thompson, JW, Que, LG, Marshall, HE, Moseley, MA, and Foster, MW. "Targeted proteomics for unraveling the post-translational regulation of human nitric oxide synthase 2." Nitric Oxide 42C (November 15, 2014): 132-.  Full Text  Link to Item
    • Jagannathan, S, Hsu, JC-C, Reid, DW, Chen, Q, Thompson, WJ, Moseley, AM, and Nicchitta, CV. "Multifunctional roles for the protein translocation machinery in RNA anchoring to the endoplasmic reticulum." The Journal of biological chemistry 289, no. 37 (September 2014): 25907-25924.  Full Text
    • Foster, MW, Thompson, JW, Ledford, JG, Dubois, LG, Hollingsworth, JW, Francisco, D, Tanyaratsrisakul, S, Voelker, DR, Kraft, M, Moseley, MA, and Foster, WM. "Identification and Quantitation of Coding Variants and Isoforms of Pulmonary Surfactant Protein A." Journal of Proteome Research 13, no. 8 (August 2014): 3722-3732.  Full Text
    • Paglia, G, Williams, JP, Menikarachchi, L, Thompson, JW, Tyldesley-Worster, R, Halldórsson, S, Rolfsson, O, Moseley, A, Grant, D, Langridge, J, Palsson, BO, and Astarita, G. "Ion mobility derived collision cross sections to support metabolomics applications." Analytical Chemistry 86, no. 8 (April 2014): 3985-3993.  Full Text
    • Yang, W, Sheng, H, Thompson, JW, Zhao, S, Wang, L, Miao, P, Liu, X, Moseley, MA, and Paschen, W. "Small ubiquitin-like modifier 3-modified proteome regulated by brain ischemia in novel small ubiquitin-like modifier transgenic mice: putative protective proteins/pathways." Stroke 45, no. 4 (April 2014): 1115-1122.  Full Text
    • Iwabuchi, M, Sheng, H, Thompson, JW, Wang, L, Dubois, LG, Gooden, D, Moseley, M, Paschen, W, and Yang, W. "Characterization of the ubiquitin-modified proteome regulated by transient forebrain ischemia." Journal of Cerebral Blood Flow and Metabolism : Official Journal of the International Society of Cerebral Blood Flow and Metabolism 34, no. 3 (March 2014): 425-432.  Full Text
    • Little, Dianne, J Will Thompson, Laura G. Dubois, David S. Ruch, M Arthur Moseley, and Farshid Guilak. “Proteomic differences between male and female anterior cruciate ligament and patellar tendon..” Plos One 9, no. 5 (January 2014). https://doi.org/10.1371/journal.pone.0096526.
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    • Schechter, MA, Hsieh, MKH, Njoroge, LW, Thompson, JW, Soderblom, EJ, Feger, BJ, Troupes, CD, Hershberger, KA, Ilkayeva, OR, Nagel, WL, Landinez, GP, Shah, KM, Burns, VA, Santacruz, L, Hirschey, MD, Foster, MW, Milano, CA, Moseley, MA, Piacentino, V, and Bowles, DE. "Phosphoproteomic profiling of human myocardial tissues distinguishes ischemic from non-ischemic end stage heart failure." PLoS ONE 9, no. 8 (January 2014): e104157-.  Full Text  Open Access Copy
    • Yang, W, Sheng, H, Thompson, JW, Zhao, S, Wang, L, Miao, P, Liu, X, Moseley, MA, and Paschen, W. "Small ubiquitin-like modifier 3-modified proteome regulated by brain ischemia in novel small ubiquitin-like modifier transgenic mice: Putative protective proteins/pathways." Stroke 45, no. 4 (January 1, 2014): 1115-1122.  Full Text
    • Benjamin, AM, Thompson, JW, Soderblom, EJ, Geromanos, SJ, Henao, R, Kraus, VB, Moseley, MA, and Lucas, JE. "A flexible statistical model for alignment of label-free proteomics data--incorporating ion mobility and product ion information." BMC bioinformatics 14 (December 16, 2013): 364-.  Full Text  Open Access Copy
    • Foster, MW, Thompson, JW, Forrester, MT, Sha, Y, McMahon, TJ, Bowles, DE, Moseley, MA, and Marshall, HE. "Proteomic analysis of the NOS2 interactome in human airway epithelial cells." Nitric Oxide 34 (November 2013): 37-46.  Full Text
    • Foster, MW, Thompson, JW, Forrester, MT, Sha, Y, McMahon, TJ, Bowles, DE, Moseley, MA, and Marshall, HE. "Proteomic analysis of the NOS2 interactome in human airway epithelial cells." Nitric Oxide 34 (November 1, 2013): 37-46.  Full Text  Link to Item
    • Hoos, MD, Richardson, BM, Foster, MW, Everhart, A, Thompson, JW, Moseley, MA, and Colton, CA. "Longitudinal study of differential protein expression in an Alzheimer's mouse model lacking inducible nitric oxide synthase." Journal of Proteome Research 12, no. 10 (October 2013): 4462-4477.  Full Text
    • Thompson, JW, Forrester, MT, Moseley, MA, and Foster, MW. "Solid-phase capture for the detection and relative quantification of S-nitrosoproteins by mass spectrometry." Methods (San Diego, Calif.) 62, no. 2 (August 2013): 130-137. (Review)  Full Text
    • Langley, RJ, Tsalik, EL, van Velkinburgh, JC, Glickman, SW, Rice, BJ, Wang, C, Chen, B, Carin, L, Suarez, A, Mohney, RP, Freeman, DH, Wang, M, You, J, Wulff, J, Thompson, JW, Moseley, MA, Reisinger, S, Edmonds, BT, Grinnell, B, Nelson, DR, Dinwiddie, DL, Miller, NA, Saunders, CJ, Soden, SS, Rogers, AJ, Gazourian, L, Fredenburgh, LE, Massaro, AF, Baron, RM, Choi, AMK, Corey, GR, Ginsburg, GS, Cairns, CB, Otero, RM, Fowler, VG, Rivers, EP, Woods, CW, and Kingsmore, SF. "An integrated clinico-metabolomic model improves prediction of death in sepsis." Sci Transl Med 5, no. 195 (July 24, 2013): 195ra95-null.  Full Text  Link to Item
    • Henao, R, Thompson, JW, Moseley, MA, Ginsburg, GS, Carin, L, and Lucas, JE. "Latent protein trees." Annals of Applied Statistics 7, no. 2 (June 1, 2013): 691-713.  Full Text  Open Access Copy
    • Skiba, NP, Spencer, WJ, Salinas, RY, Lieu, EC, Thompson, JW, and Arshavsky, VY. "Proteomic identification of unique photoreceptor disc components reveals the presence of PRCD, a protein linked to retinal degeneration." Journal of Proteome Research 12, no. 6 (June 2013): 3010-3018.  Full Text
    • Foster, MW, Thompson, JW, Que, LG, Yang, IV, Schwartz, DA, Moseley, MA, and Marshall, HE. "Proteomic analysis of human bronchoalveolar lavage fluid after subsgemental exposure." J Proteome Res 12, no. 5 (May 3, 2013): 2194-2205.  Full Text  Link to Item
    • Richardson, BM, Soderblom, EJ, Thompson, JW, and Moseley, MA. "Automated, reproducible, titania-based phosphopeptide enrichment strategy for label-free quantitative phosphoproteomics." Journal of Biomolecular Techniques : Jbt 24, no. 1 (April 2013): 8-16.  Full Text
    • Kummarapurugu, AB, Fischer, BM, Zheng, S, Milne, GL, Ghio, AJ, Potts-Kant, EN, Foster, WM, Soderblom, EJ, Dubois, LG, Moseley, MA, Thompson, JW, and Voynow, JA. "NADPH:quinone oxidoreductase 1 regulates host susceptibility to ozone via isoprostane generation." J Biol Chem 288, no. 7 (February 15, 2013): 4681-4691.  Full Text  Link to Item
    • Fan, Y, Thompson, JW, Dubois, LG, Moseley, MA, and Wernegreen, JJ. "Proteomic analysis of an unculturable bacterial endosymbiont (Blochmannia) reveals high abundance of chaperonins and biosynthetic enzymes." Journal of Proteome Research 12, no. 2 (February 2013): 704-718.  Full Text
    • Soderblom, EJ, Thompson, JW, Schwartz, EA, Chiou, E, Dubois, LG, Moseley, MA, and Zennadi, R. "Proteomic analysis of ERK1/2-mediated human sickle red blood cell membrane protein phosphorylation." Clinical proteomics 10, no. 1 (January 3, 2013): 1-.  Full Text  Open Access Copy
    • Thompson, JW, Forrester, MT, Moseley, MA, and Foster, MW. "Solid-phase capture for the detection and relative quantification of S-nitrosoproteins by mass spectrometry." Methods 62, no. 2 (2013): 130-137.  Full Text
    • Thompson, JW, Robeson, A, and Andersen, JL. "Identification of deacetylase substrates with the biotin switch approach." Methods in molecular biology (Clifton, N.J.) 1077 (January 2013): 133-148.  Full Text
    • Chan, MY, Lin, M, Lucas, J, Moseley, A, Thompson, JW, Cyr, D, Ueda, H, Kajikawa, M, Ortel, TL, and Becker, RC. "Plasma proteomics of patients with non-valvular atrial fibrillation on chronic anti-coagulation with warfarin or a direct factor Xa inhibitor." Thromb Haemost 108, no. 6 (December 2012): 1180-1191.  Full Text  Link to Item
    • Thompson, JW, Zhang, H, Smith, P, Hillman, S, Moseley, MA, and Millington, DS. "Extraction and analysis of carnitine and acylcarnitines by electrospray ionization tandem mass spectrometry directly from dried blood and plasma spots using a novel autosampler." Rapid Communications in Mass Spectrometry : Rcm 26, no. 21 (November 2012): 2548-2554.  Full Text
    • Thalassinos, K, Vissers, JPC, Tenzer, S, Levin, Y, Thompson, JW, Daniel, D, Mann, D, DeLong, MR, Moseley, MA, America, AH, Ottens, AK, Cavey, GS, Efstathiou, G, Scrivens, JH, Langridge, JI, and Geromanos, SJ. "Design and application of a data-independent precursor and product ion repository." Journal of the American Society for Mass Spectrometry 23, no. 10 (October 2012): 1808-1820.  Full Text
    • Lucas, JE, Thompson, JW, Dubois, LG, McCarthy, J, Tillmann, H, Thompson, A, Shire, N, Hendrickson, R, Dieguez, F, Goldman, P, Schwarz, K, Patel, K, McHutchison, J, and Moseley, MA. "Metaprotein expression modeling for label-free quantitative proteomics. (Published online)" BMC Bioinformatics 13 (May 4, 2012): 74-.  Full Text  Link to Item
    • Petricka, JJ, Schauer, MA, Megraw, M, Breakfield, NW, Thompson, JW, Georgiev, S, Soderblom, EJ, Ohler, U, Moseley, MA, Grossniklaus, U, and Benfey, PN. "The protein expression landscape of the Arabidopsis root." Proc Natl Acad Sci U S A 109, no. 18 (May 1, 2012): 6811-6818.  Full Text  Link to Item
    • Foster, MW, Yang, Z, Gooden, DM, Thompson, JW, Ball, CH, Turner, ME, Hou, Y, Pi, J, Moseley, MA, and Que, LG. "Proteomic characterization of the cellular response to nitrosative stress mediated by s-nitrosoglutathione reductase inhibition." J Proteome Res 11, no. 4 (April 6, 2012): 2480-2491.  Full Text  Link to Item
    • Chireau, Monique V., J Will Thompson, Brenna Richardson, Arthur Moseley, and L Kristin Newby. “Proteomics of Preeclamptic Placenta.” Reproductive Sciences 19, no. S3 (March 1, 2012): 201A-201A.
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    • Henao, R, Thompson, JW, Moseley, MA, Ginsburg, GS, Carin, L, and Lucas, JE. "Hierarchical factor modeling of proteomics data." 2012 Ieee 2nd International Conference on Computational Advances in Bio and Medical Sciences (Iccabs) (February 2012).  Full Text
    • Yang, W, Thompson, JW, Wang, Z, Wang, L, Sheng, H, Foster, MW, Moseley, MA, and Paschen, W. "Analysis of oxygen/glucose-deprivation-induced changes in SUMO3 conjugation using SILAC-based quantitative proteomics." Journal of Proteome Research 11, no. 2 (February 2012): 1108-1117.  Full Text
    • Zennadi, R, Whalen, EJ, Soderblom, EJ, Alexander, SC, Thompson, JW, Dubois, LG, Moseley, MA, and Telen, MJ. "Erythrocyte plasma membrane-bound ERK1/2 activation promotes ICAM-4-mediated sickle red cell adhesion to endothelium." Blood 119, no. 5 (February 2012): 1217-1227.  Full Text
    • Saka, HA, Thompson, JW, Chen, Y-S, Kumar, Y, Dubois, LG, Moseley, MA, and Valdivia, RH. "Quantitative proteomics reveals metabolic and pathogenic properties of Chlamydia trachomatis developmental forms." Molecular Microbiology 82, no. 5 (December 2011): 1185-1203.  Full Text
    • Andersen, JL, Thompson, JW, Lindblom, KR, Johnson, ES, Yang, C-S, Lilley, LR, Freel, CD, Moseley, MA, and Kornbluth, S. "A biotin switch-based proteomics approach identifies 14-3-3ζ as a target of Sirt1 in the metabolic regulation of caspase-2." Molecular cell 43, no. 5 (September 2011): 834-842.  Full Text
    • Melvin, JA, Murphy, CF, Dubois, LG, Thompson, JW, Moseley, MA, and McCafferty, DG. "Staphylococcus aureus sortase A contributes to the Trojan horse mechanism of immune defense evasion with its intrinsic resistance to Cys184 oxidation." Biochemistry 50, no. 35 (September 2011): 7591-7599.  Full Text
    • Patel, K, Lucas, JE, Thompson, JW, Dubois, LG, Tillmann, HL, Thompson, AJ, Uzarski, D, Califf, RM, Moseley, MA, Ginsburg, GS, McHutchison, JG, McCarthy, JJ, and MURDOCK Horizon 1 Study Team, . "High predictive accuracy of an unbiased proteomic profile for sustained virologic response in chronic hepatitis C patients." Hepatology (Baltimore, Md.) 53, no. 6 (June 2011): 1809-1818.  Full Text
    • Soderblom, EJ, Philipp, M, Thompson, JW, Caron, MG, and Moseley, MA. "Quantitative label-free phosphoproteomics strategy for multifaceted experimental designs." Anal Chem 83, no. 10 (May 15, 2011): 3758-3764.  Full Text  Link to Item
    • Andersen, JL, Thompson, JW, Buchakjian, MR, Moseley, MA, and Kornbluth, S. "Abstract 4697: Metabolic regulation of caspase-2." Cancer Research 71, no. 8 Supplement (April 15, 2011): 4697-4697.  Full Text
    • Reidel, B, Thompson, JW, Farsiu, S, Moseley, MA, Skiba, NP, and Arshavsky, VY. "Proteomic profiling of a layered tissue reveals unique glycolytic specializations of photoreceptor cells." Molecular & Cellular Proteomics : Mcp 10, no. 3 (March 2011): M110.002469-null.  Full Text
    • Forrester, MT, Hess, DT, Thompson, JW, Hultman, R, Moseley, MA, Stamler, JS, and Casey, PJ. "Site-specific analysis of protein S-acylation by resin-assisted capture." Journal of Lipid Research 52, no. 2 (February 2011): 393-398.  Full Text
    • Roulhac, PL, Ward, JM, Thompson, JW, Soderblom, EJ, Silva, M, Moseley, MA, and Jarvis, ED. "Microproteomics: Quantitative proteomic profiling of small numbers of laser-captured cells." Cold Spring Harbor Protocols 6, no. 2 (February 1, 2011).  Full Text  Open Access Copy
    • Roulhac, PL, Ward, JM, Thompson, JW, Soderblom, EJ, Silva, M, Moseley, MA, and Jarvis, ED. "Microproteomics: quantitative proteomic profiling of small numbers of laser-captured cells. (Published online)" Cold Spring Harb Protoc 2011, no. 2 (February 1, 2011): pdb.prot5573-.  Open Access Copy  Link to Item
    • Cyr, DD, Lucas, JE, Thompson, JW, Patel, K, Clark, PJ, Thompson, A, Tillmann, HL, McHutchison, JG, Moseley, MA, and McCarthy, JJ. "Characterization of serum proteins associated with IL28B genotype among patients with chronic hepatitis C." PLoS One 6, no. 7 (2011): e21854-.  Full Text  Link to Item
    • Kozubowski, L, Thompson, JW, Cardenas, ME, Moseley, MA, and Heitman, J. "Association of calcineurin with the COPI protein Sec28 and the COPII protein Sec13 revealed by quantitative proteomics." PLoS One 6, no. 10 (2011): e25280-.  Full Text  Link to Item
    • Lee, A, Toffaletti, DL, Tenor, J, Soderblom, EJ, Thompson, JW, Moseley, MA, Price, M, and Perfect, JR. "Survival defects of Cryptococcus neoformans mutants exposed to human cerebrospinal fluid result in attenuated virulence in an experimental model of meningitis." Infection and Immunity 78, no. 10 (October 2010): 4213-4225.  Full Text
    • Benhar, M, Thompson, JW, Moseley, MA, and Stamler, JS. "Identification of S-nitrosylated targets of thioredoxin using a quantitative proteomic approach." Biochemistry 49, no. 32 (August 2010): 6963-6969.  Full Text  Open Access Copy
    • Morris, DP, Roush, ED, Thompson, JW, Moseley, MA, Murphy, JW, and McMurry, JL. "Kinetic characterization of Salmonella FliK-FlhB interactions demonstrates complexity of the Type III secretion substrate-specificity switch." Biochemistry 49, no. 30 (August 2010): 6386-6393.  Full Text  Open Access Copy
    • West, GM, Thompson, JW, Soderblom, EJ, Dubois, LG, Dearmond, PD, Moseley, MA, and Fitzgerald, MC. "Mass spectrometry-based thermal shift assay for protein-ligand binding analysis." Anal Chem 82, no. 13 (July 1, 2010): 5573-5581.  Full Text  Open Access Copy  Link to Item
    • Xia, W, Bacus, S, Husain, I, Liu, L, Zhao, S, Liu, Z, Moseley, MA, Thompson, JW, Chen, FL, Koch, KM, and Spector, NL. "Resistance to ErbB2 tyrosine kinase inhibitors in breast cancer is mediated by calcium-dependent activation of RelA." Molecular Cancer Therapeutics 9, no. 2 (February 2, 2010): 292-299.  Full Text
    • Thompson, JW, Lieberman, RA, and Jorgenson, JW. "Hydrodynamic chromatography for the size classification of micron and sub-micron sized packing materials." Journal of chromatography. A 1216, no. 45 (November 2009): 7732-7738.  Full Text
    • Andersen, JL, Johnson, CE, Freel, CD, Parrish, AB, Day, JL, Buchakjian, MR, Nutt, LK, Thompson, JW, Moseley, MA, and Kornbluth, S. "Restraint of apoptosis during mitosis through interdomain phosphorylation of caspase-2." The Embo Journal 28, no. 20 (October 2009): 3216-3227.  Full Text
    • Forrester, MT, Thompson, JW, Foster, MW, Nogueira, L, Moseley, MA, and Stamler, JS. "Proteomic analysis of S-nitrosylation and denitrosylation by resin-assisted capture." Nature Biotechnology 27, no. 6 (June 2009): 557-559.  Full Text
    • Kaiser, TJ, Thompson, JW, Mellors, JS, and Jorgenson, JW. "Capillary-based instrument for the simultaneous measurement of solution viscosity and solute diffusion coefficient at pressures up to 2000 bar and implications for ultrahigh pressure liquid chromatography." Analytical Chemistry 81, no. 8 (April 15, 2009): 2860-2868.  Full Text
    • Thompson, JW, Kaiser, TJ, and Jorgenson, JW. "Viscosity measurements of methanol-water and acetonitrile-water mixtures at pressures up to 3500 bar using a novel capillary time-of-flight viscometer." Journal of Chromatography. A 1134, no. 1-2 (November 2006): 201-209.  Full Text
    • Thompson, JW, Mellors, JS, Eschelbach, JW, and Jorgenson, JW. "Recent advances in ultrahigh-pressure liquid chromatography." Lcgc North America 24, no. 4 SUPPL. (January 1, 2006): 16-20. (Review)
    • Jerkovich, AD, Mellors, JS, Thompson, JW, and Jorgenson, JW. "Linear velocity surge caused by mobile-phase compression as a source of band broadening in isocratic ultrahigh-pressure liquid chromatography." Analytical Chemistry 77, no. 19 (October 1, 2005): 6292-6299.  Full Text
    • Thompson, JW, Eschelbach, JW, Wilburn, RT, and Jorgenson, JW. "Investigation of electrospray ionization and electrostatic focusing devices using a three-dimensional electrospray current density profiler." Journal of the American Society for Mass Spectrometry 16, no. 3 (March 1, 2005): 312-323.  Full Text

  • Book Sections

    • Thompson, JW, Jiang, M, and Yang, W. "Proteomic analysis of SUMOylation in the post-ischemic brain." In Neuromethods, 207-224. January 1, 2017.  Full Text
    • Millington, DS, Zhang, H, Arthur Moseley, M, Will Thompson, J, and Smith, P. "Direct Solvent Extraction and Analysis of Biomarkers in Dried Blood Spots Using a Flow-Through Autosampler." In Dried Blood Spots: Applications and Techniques, 314-324. June 30, 2014.  Full Text

  • Conference Papers

    • Naagie, S, Lusk, S, Thompson, JW, Mock, M, Lucas, J, Dubois, L, St John-Williams, L, Moseley, A, and Patel, K. "Lipidomic Signature As a Predictor of Liver Disease Events in HIV/HCV Co-Infectedpatients." Annual Meeting of the American-Association-for-the-Study-of-Liver-Diseases (AASLD) / Liver Meeting. San Francisco, CA. November 9, 2018 - November 13, 2018.: WILEY, October 1, 2018.  Link to Item
    • Todd, J. L., V. Venkat, R. Henao, C. Brinkley, F. L. Kelly, C. W. Frankel, A. Frear, et al. “Bronchoalveolar Lavage Fluid Proteome in Chronic Lung Allograft Dysfunction.” In Journal of Heart and Lung Transplantation, 37:S204–S204. ELSEVIER SCIENCE INC, 2018.
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    • Lin, C-C, Kitagawa, M, Tang, X, Hou, M-H, Wu, J, Qu, DC, Srinivas, V, Liu, X, Thompson, JW, Mathey-Prevot, B, Yao, T-P, Lee, SH, and Chi, J-T. "CoA synthase regulates mitotic fidelity via CBP-mediated acetylation." March 12, 2018.  Full Text
    • Kazi, ZB, Desai, AK, Mori, M, Dua, K, Thompson, JW, Lucas, J, Moseley, A, and Kishnani, PS. "Differentially expressed proteins in infantile Pompe disease: prediction of patients likely to mount an immune response to enzyme replacement therapy." : Elsevier BV, February 2016.  Full Text
    • Foster, MW, Gwinn, WM, Kelly, FL, Brass, DM, Thompson, JW, Moseley, MA, Morgan, DL, and Palmer, SM. "Proteomic Analysis Reveals Significant Epithelial Remodeling After In Vitro Exposure To Diacetyl Vapor." 2016.  Link to Item
    • Foster, MW, Thompson, JW, Brass, DM, Moseley, MA, Morgan, DL, and Palmer, SM. "Plasma Metabolomics Analysis Identifies Candidate Biomarkers Of Flavoring-Induced Bronchiolitis Obliterans." 2016.  Link to Item
    • Kazi, Z, Berrier, K, Lu, C, Bali, D, Will Thompson, J, Arthur Moseley, M, and Kishnani, P. "Proteomics to identify signature proteins in patients likely to mount an immune response to enzyme replacement therapy in infantile Pompe disease." : Elsevier BV, February 2015.  Full Text
    • Figueiredo-Freitas, C, Foster, MW, Nogueira, L, Liang, J, Yamashita, A, Dulce, R, Thompson, JW, Hare, JM, Moseley, MA, Sorenson, MM, and Pinto, JR. "S-Nitrosylation Decreases Ca2+ Sensitivity and Actomyosin ATPase Activity of Contractile Proteins in Cardiac Myofibrils." : Elsevier BV, January 2013.  Full Text
    • Naggie, S, Osinusi, A, Himmel, T, Lucas, J, Thompson, JW, Dubois, LG, Moseley, MA, Clark, PJ, Kottilil, S, and Patel, K. "Targeted proteomics signature identifies corticosteroid binding globulin peptides as highly predictive of treatment response in IL28B unfavorable genotype patients." October 2012.  Link to Item
    • Foster, M, Thompson, JW, Forrester, M, Sha, Y, Bowles, D, Moseley, MA, and Marshall, H. "Quantitative proteomics of the cytokine-modulated NOS2 interactome in airway epithelial cells." : Elsevier BV, July 2012.  Full Text
    • Philipp, M., E. J. Soderblom, J. W. Thompson, M. G. Caron, and M. A. Moseley. “A Label-free Quantitative Phosphoproteomic Platform To Assess The Phosphorylation State Of A Complex Sample.” In Naunyn Schmiedebergs Archives of Pharmacology, 383:69–69. SPRINGER, 2011.
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    • Piacentino, V, Thompson, JW, Soderblom, EJ, Foster, M, Burns, VA, Rogers, JG, Milano, CA, Moseley, MA, and Bowles, DE. "Ischemic Human Heart Failure is Associated With Decreased Phosphorylation of Pyruvate Dehydrogenase and Triosephosphate Isomerase: Proteomic Evidence Supporting Carbohydrate Utilization Preference in the End-Stage Failing Ischemic Heart." : LIPPINCOTT WILLIAMS & WILKINS, November 23, 2010.  Link to Item
    • Tutaeva, V, Thompson, JW, Foster, MW, Moseley, MA, Holly, SP, Delahunty, M, Parise, LV, and Telen, MJ. "S-Nitrosylation of Rap1and Relationship to Rap1 Activity and Disease Status In SCD." November 19, 2010.  Link to Item
    • Patel, Keyur, Joseph Lucas, J. W. Thompson, Martin A. Moseley, Diane M. Uzarski, Hans L. Tillmann, Robert M. Califf, Jeanette McCarthy, and John G. McHutchison. “HIGH PREDICTIVE ACCURACY OF AN UNBIASED PROTEOMIC PROFILE TO PREDICT SUSTAINED VIROLOGIC RESPONSE IN GENOTYPE 1 CHRONIC HEPATITIS C PATIENTS.” In Hepatology, 48:403A-403A. JOHN WILEY & SONS INC, 2008.
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