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Xiling Shen

Adjunct Professor in the Department of Pathology
Pathology
2167 CIEMAS, 101 Science Dr, Box 3382, Durham, NC 27708
2167 CIEMAS, 101 Science Drive, Box 3382, Durham, NC 27708

Research Interests


Precision medicine for cancer, regeneration, microbiome, and gut-brain axis. Multi-omics approaches including organoid, epigenetics, CRISPR, single-cell, metabolomics, machine learning, droplet microfluidics, humanized immune model and intravital imaging.

Selected Grants


Duke Program of Training in Pulmonary ReSearch to Promote, Engage and Retain Academic Researchers (PROSPER)

Inst. Training Prgm or CMEPreceptor · Awarded by National Heart, Lung, and Blood Institute · 2022 - 2026

Transcriptional reprogramming of lethal small cell prostate cancer

ResearchCollaborator · Awarded by Department of Defense · 2021 - 2024

Effects of storage method on intestinal allograft immune profile and viability

ResearchCo Investigator · Awarded by Department of Defense · 2019 - 2024

Mapping Epigenetic Memory of Exposure New To Observe (MEMENTO)

ResearchPrincipal Investigator · Awarded by Defense Advanced Research Projects Agency · 2019 - 2024

Developing bacteria-derived therapies to cure inflammatory bowel diseases

ResearchCollaborator · Awarded by Hartwell Foundation · 2020 - 2023

COVID Survivors Long Term Follow Up Study--WMD ECHO Detector

ResearchPrincipal Investigator · Awarded by Icahn School of Medicine at Mount Sinai · 2021 - 2023

Developing a comprehensive model for peripheral nerve stimulation of gastrointestinal function

ResearchPrincipal Investigator · Awarded by National Institutes of Health · 2019 - 2023

EFRI CEE : Engineering Technologies to Determine Causal Relationships Between Chromatin Structure and Gene Regulation

ResearchCo-Principal Investigator · Awarded by National Science Foundation · 2018 - 2022

An organotypic model recapitulating colon cancer microenvironment and metastasis

ResearchPrincipal Investigator · Awarded by University of Texas Southwestern Medical Center · 2017 - 2022

Epigenomic Drivers of Drug Resistance in Pediatric Brain Tumors

ResearchPrincipal Investigator · Awarded by Ann & Robert H. Lurie Children's Hospital of Chicago · 2020 - 2021

Human cell atlas along the gut-brain axis

ResearchPrincipal Investigator · Awarded by Chan Zuckerberg Initiative · 2019 - 2021

Spatiotemporal and robustness regulation of the stem cell niche

ResearchPrincipal Investigator · Awarded by National Institutes of Health · 2017 - 2021

Establishing the molecular and cellular mechanisms of Lgr5 signaling for controlling cancer stem cell behavior

ResearchCollaborator · Awarded by National Institutes of Health · 2017 - 2021

Bioinformatics and Computational Biology Training Program

Inst. Training Prgm or CMEMentor · Awarded by National Institutes of Health · 2005 - 2021

Development of molecular diganostic assay for accurate dection of COVID19 infection

ResearchPrincipal Investigator · Awarded by North Carolina Biotechnology Center · 2020 - 2021

HARDAC-M: Enabling memory-intensive computation for genomics

EquipmentMajor User · Awarded by North Carolina Biotechnology Center · 2020 - 2021

Engineering Signaling Specificity to Program Intestinal Organoid Development

ResearchPrincipal Investigator · Awarded by Defense Advanced Research Projects Agency · 2016 - 2021

Genetics Training Grant

Inst. Training Prgm or CMEMentor · Awarded by National Institutes of Health · 1979 - 2020

Organization and Function of Cellular Structure

Inst. Training Prgm or CMEMentor · Awarded by National Institutes of Health · 1975 - 2020

Stimulating anti-tumor immunity with cancer vaccine in mice with a humanized immune system

ResearchPrincipal Investigator · Awarded by Houston Methodist Research Institute · 2019 - 2020

Closed-loop sacral nerve stimulation for inflammation - Phase I -

ResearchPrincipal Investigator · Awarded by Johns Hopkins University · 2015 - 2019

Robustness of the Intestinal Stem Cell Niche

ResearchPrincipal Investigator · Awarded by National Institutes of Health · 2015 - 2018

Functional mapping of efferent gut neuroepithelial circuits

ResearchPrincipal Investigator · Awarded by National Institutes of Health · 2016 - 2018

Metabolic Reprogramming of Colon Cancer Liver Metastasis

ResearchPrincipal Investigator · Awarded by National Institutes of Health · 2016 - 2017

External Relationships


  • Terasaki Institute

This faculty member (or a member of their immediate family) has reported outside activities with the companies, institutions, or organizations listed above. This information is available to institutional leadership and, when appropriate, management plans are in place to address potential conflicts of interest.