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Reflection on Molecular Approaches Influencing State-of-the-Art Bioremediation Design: Culturing to Microbial Community Fingerprinting to Omics.

Publication ,  Journal Article
Czaplicki, LM; Gunsch, CK
Published in: Journal of environmental engineering (New York, N.Y.)
October 2016

Bioremediation is generally viewed as a cost effective and sustainable technology because it relies on microbes to transform pollutants into benign compounds. Advances in molecular biological analyses allow unprecedented microbial detection and are increasingly incorporated into bioremediation. Throughout history, state-of-the-art techniques have informed bioremediation strategies. However, the insights those techniques provided were not as in depth as those provided by recently developed omics tools. Advances in next generation sequencing (NGS) have now placed metagenomics and metatranscriptomics within reach of environmental engineers. As NGS costs decrease, metagenomics and metatranscriptomics have become increasingly feasible options to rapidly scan sites for specific degradative functions and identify microorganisms important in pollutant degradation. These omic techniques are capable of revolutionizing biological treatment in environmental engineering by allowing highly sensitive characterization of previously uncultured microorganisms. Omics enables the discovery of novel microorganisms for use in bioaugmentation and supports systematic optimization of biostimulation strategies. This review describes the omics journey from roots in biology and medicine to its current status in environmental engineering including potential future directions in commercial application.

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Published In

Journal of environmental engineering (New York, N.Y.)

DOI

EISSN

1943-7870

ISSN

0733-9372

Publication Date

October 2016

Volume

142

Issue

10

Related Subject Headings

  • Environmental Engineering
  • 4005 Civil engineering
  • 4004 Chemical engineering
  • 0907 Environmental Engineering
  • 0905 Civil Engineering
  • 0904 Chemical Engineering
 

Citation

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ICMJE
MLA
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Czaplicki, L. M., & Gunsch, C. K. (2016). Reflection on Molecular Approaches Influencing State-of-the-Art Bioremediation Design: Culturing to Microbial Community Fingerprinting to Omics. Journal of Environmental Engineering (New York, N.Y.), 142(10). https://doi.org/10.1061/(asce)ee.1943-7870.0001141
Czaplicki, Lauren M., and Claudia K. Gunsch. “Reflection on Molecular Approaches Influencing State-of-the-Art Bioremediation Design: Culturing to Microbial Community Fingerprinting to Omics.Journal of Environmental Engineering (New York, N.Y.) 142, no. 10 (October 2016). https://doi.org/10.1061/(asce)ee.1943-7870.0001141.
Czaplicki LM, Gunsch CK. Reflection on Molecular Approaches Influencing State-of-the-Art Bioremediation Design: Culturing to Microbial Community Fingerprinting to Omics. Journal of environmental engineering (New York, NY). 2016 Oct;142(10).
Czaplicki, Lauren M., and Claudia K. Gunsch. “Reflection on Molecular Approaches Influencing State-of-the-Art Bioremediation Design: Culturing to Microbial Community Fingerprinting to Omics.Journal of Environmental Engineering (New York, N.Y.), vol. 142, no. 10, Oct. 2016. Epmc, doi:10.1061/(asce)ee.1943-7870.0001141.
Czaplicki LM, Gunsch CK. Reflection on Molecular Approaches Influencing State-of-the-Art Bioremediation Design: Culturing to Microbial Community Fingerprinting to Omics. Journal of environmental engineering (New York, NY). 2016 Oct;142(10).

Published In

Journal of environmental engineering (New York, N.Y.)

DOI

EISSN

1943-7870

ISSN

0733-9372

Publication Date

October 2016

Volume

142

Issue

10

Related Subject Headings

  • Environmental Engineering
  • 4005 Civil engineering
  • 4004 Chemical engineering
  • 0907 Environmental Engineering
  • 0905 Civil Engineering
  • 0904 Chemical Engineering