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Common variants near ABCA1 and in PMM2 are associated with primary open-angle glaucoma.

Publication ,  Journal Article
Chen, Y; Lin, Y; Vithana, EN; Jia, L; Zuo, X; Wong, TY; Chen, LJ; Zhu, X; Tam, POS; Gong, B; Qian, S; Li, Z; Liu, X; Mani, B; Luo, Q ...
Published in: Nat Genet
October 2014

We performed a genome-wide association study for primary open-angle glaucoma (POAG) in 1,007 cases with high-pressure glaucoma (HPG) and 1,009 controls from southern China. We observed genome-wide significant association at multiple SNPs near ABCA1 at 9q31.1 (rs2487032; P = 1.66 × 10(-8)) and suggestive evidence of association in PMM2 at 16p13.2 (rs3785176; P = 3.18 × 10(-6)). We replicated these findings in a set of 525 HPG cases and 912 controls from Singapore and a further set of 1,374 POAG cases and 4,053 controls from China. We observed genome-wide significant association with more than one SNP at the two loci (P = 2.79 × 10(-19) for rs2487032 representing ABCA1 and P = 5.77 × 10(-10) for rs3785176 representing PMM2). Both ABCA1 and PMM2 are expressed in the trabecular meshwork, optic nerve and other ocular tissues. In addition, ABCA1 is highly expressed in the ganglion cell layer of the retina, a finding consistent with it having a role in the development of glaucoma.

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Published In

Nat Genet

DOI

EISSN

1546-1718

Publication Date

October 2014

Volume

46

Issue

10

Start / End Page

1115 / 1119

Location

United States

Related Subject Headings

  • Young Adult
  • Singapore
  • Reverse Transcriptase Polymerase Chain Reaction
  • Principal Component Analysis
  • Polymorphism, Single Nucleotide
  • Phosphotransferases (Phosphomutases)
  • Middle Aged
  • Male
  • Linkage Disequilibrium
  • Humans
 

Citation

APA
Chicago
ICMJE
MLA
NLM
Chen, Y., Lin, Y., Vithana, E. N., Jia, L., Zuo, X., Wong, T. Y., … Yang, Z. (2014). Common variants near ABCA1 and in PMM2 are associated with primary open-angle glaucoma. Nat Genet, 46(10), 1115–1119. https://doi.org/10.1038/ng.3078
Chen, Yuhong, Ying Lin, Eranga N. Vithana, Liyun Jia, Xianbo Zuo, Tien Yin Wong, Li Jia Chen, et al. “Common variants near ABCA1 and in PMM2 are associated with primary open-angle glaucoma.Nat Genet 46, no. 10 (October 2014): 1115–19. https://doi.org/10.1038/ng.3078.
Chen Y, Lin Y, Vithana EN, Jia L, Zuo X, Wong TY, et al. Common variants near ABCA1 and in PMM2 are associated with primary open-angle glaucoma. Nat Genet. 2014 Oct;46(10):1115–9.
Chen, Yuhong, et al. “Common variants near ABCA1 and in PMM2 are associated with primary open-angle glaucoma.Nat Genet, vol. 46, no. 10, Oct. 2014, pp. 1115–19. Pubmed, doi:10.1038/ng.3078.
Chen Y, Lin Y, Vithana EN, Jia L, Zuo X, Wong TY, Chen LJ, Zhu X, Tam POS, Gong B, Qian S, Li Z, Liu X, Mani B, Luo Q, Guzman C, Leung CKS, Li X, Cao W, Yang Q, Tham CCY, Cheng Y, Zhang X, Wang N, Aung T, Khor CC, Pang CP, Sun X, Yang Z. Common variants near ABCA1 and in PMM2 are associated with primary open-angle glaucoma. Nat Genet. 2014 Oct;46(10):1115–1119.

Published In

Nat Genet

DOI

EISSN

1546-1718

Publication Date

October 2014

Volume

46

Issue

10

Start / End Page

1115 / 1119

Location

United States

Related Subject Headings

  • Young Adult
  • Singapore
  • Reverse Transcriptase Polymerase Chain Reaction
  • Principal Component Analysis
  • Polymorphism, Single Nucleotide
  • Phosphotransferases (Phosphomutases)
  • Middle Aged
  • Male
  • Linkage Disequilibrium
  • Humans