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Visual annotation of the gene database.

Publication ,  Journal Article
Wen, J; Wang, X; Kibbe, W; Lin, S; Lu, H
Published in: Annu Int Conf IEEE Eng Med Biol Soc
2009

The genes in NCBI databases are currently annotated with itemized text (Gene Reference Into Function, or GeneRIF). A previous work suggests that the visual presentation can be more effective when time and space are under heavy constraints. Here we report a novel annotation of the genome information using Web 2.0 technologies: GeneGIF (Gene Graphics Into Function). The users can quickly scan through important functions of each gene from a graph, and then go to detailed pages when they find interesting annotations. The modular implementation makes it easily pluggable into other widely used databases without reprogramming. Similar approaches are being developed to incorporate information to other types of genomics and proteomics databases.

Duke Scholars

Published In

Annu Int Conf IEEE Eng Med Biol Soc

DOI

ISSN

2375-7477

Publication Date

2009

Volume

2009

Start / End Page

4175 / 4177

Location

United States

Related Subject Headings

  • Vocabulary, Controlled
  • User-Computer Interface
  • Software
  • Proteomics
  • Proteome
  • Natural Language Processing
  • Information Storage and Retrieval
  • Humans
  • Genomics
  • Genome
 

Citation

APA
Chicago
ICMJE
MLA
NLM
Wen, J., Wang, X., Kibbe, W., Lin, S., & Lu, H. (2009). Visual annotation of the gene database. Annu Int Conf IEEE Eng Med Biol Soc, 2009, 4175–4177. https://doi.org/10.1109/IEMBS.2009.5333931
Wen, Jing, Xishu Wang, Warren Kibbe, Simon Lin, and Hui Lu. “Visual annotation of the gene database.Annu Int Conf IEEE Eng Med Biol Soc 2009 (2009): 4175–77. https://doi.org/10.1109/IEMBS.2009.5333931.
Wen J, Wang X, Kibbe W, Lin S, Lu H. Visual annotation of the gene database. Annu Int Conf IEEE Eng Med Biol Soc. 2009;2009:4175–7.
Wen, Jing, et al. “Visual annotation of the gene database.Annu Int Conf IEEE Eng Med Biol Soc, vol. 2009, 2009, pp. 4175–77. Pubmed, doi:10.1109/IEMBS.2009.5333931.
Wen J, Wang X, Kibbe W, Lin S, Lu H. Visual annotation of the gene database. Annu Int Conf IEEE Eng Med Biol Soc. 2009;2009:4175–4177.

Published In

Annu Int Conf IEEE Eng Med Biol Soc

DOI

ISSN

2375-7477

Publication Date

2009

Volume

2009

Start / End Page

4175 / 4177

Location

United States

Related Subject Headings

  • Vocabulary, Controlled
  • User-Computer Interface
  • Software
  • Proteomics
  • Proteome
  • Natural Language Processing
  • Information Storage and Retrieval
  • Humans
  • Genomics
  • Genome