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A Nonequilibrium Molecular Dynamics Study of Infrared Perturbed Electron Transfer.

Publication ,  Journal Article
Ma, Z; Antoniou, P; Zhang, P; Skourtis, SS; Beratan, DN
Published in: Journal of chemical theory and computation
September 2018

Infrared (IR) excitation is known to change electron-transfer kinetics in molecules. We use nonequilibrium molecular dynamics (NEqMD) simulations to explore the molecular underpinnings of how vibrational excitation may influence nonadiabatic electron-transfer. NEqMD combines classical molecular dynamics simulations with nonequilibrium semiclassical initial conditions to simulate the dynamics of vibrationally excited molecules. We combine NEqMD with electronic structure computations to probe IR effects on electron transfer rates in two molecular species, dimethylaniline-guanosine-cytidine-anthracene (DMA-GC-Anth) and 4-(pyrrolidin-1-yl)phenyl-2,6,7-triazabicyclo[2.2.2]octatriene-10-cyanoanthracen-9-yl (PP-BCN-CA). In DMA-GC-Anth, the simulations find that IR excitation of the NH2 scissoring motion and the subsequent intramolecular vibrational energy redistribution (IVR) do not significantly alter the mean-squared donor-acceptor (DA) coupling interaction. This finding is consistent with earlier computational analysis of static systems. In PP-BCN-CA, IR excitation of the bridging C═N bond changes the bridge-mediated coupling for charge separation and recombination by ∼30-40%. The methods described here enable detailed explorations of how IR excitation may perturb charge-transfer processes at the molecular scale.

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Published In

Journal of chemical theory and computation

DOI

EISSN

1549-9626

ISSN

1549-9618

Publication Date

September 2018

Volume

14

Issue

9

Start / End Page

4818 / 4832

Related Subject Headings

  • Chemical Physics
  • 3407 Theoretical and computational chemistry
  • 3406 Physical chemistry
  • 0803 Computer Software
  • 0601 Biochemistry and Cell Biology
  • 0307 Theoretical and Computational Chemistry
 

Citation

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Ma, Z., Antoniou, P., Zhang, P., Skourtis, S. S., & Beratan, D. N. (2018). A Nonequilibrium Molecular Dynamics Study of Infrared Perturbed Electron Transfer. Journal of Chemical Theory and Computation, 14(9), 4818–4832. https://doi.org/10.1021/acs.jctc.8b00001
Ma, Zheng, Panayiotis Antoniou, Peng Zhang, Spiros S. Skourtis, and David N. Beratan. “A Nonequilibrium Molecular Dynamics Study of Infrared Perturbed Electron Transfer.Journal of Chemical Theory and Computation 14, no. 9 (September 2018): 4818–32. https://doi.org/10.1021/acs.jctc.8b00001.
Ma Z, Antoniou P, Zhang P, Skourtis SS, Beratan DN. A Nonequilibrium Molecular Dynamics Study of Infrared Perturbed Electron Transfer. Journal of chemical theory and computation. 2018 Sep;14(9):4818–32.
Ma, Zheng, et al. “A Nonequilibrium Molecular Dynamics Study of Infrared Perturbed Electron Transfer.Journal of Chemical Theory and Computation, vol. 14, no. 9, Sept. 2018, pp. 4818–32. Epmc, doi:10.1021/acs.jctc.8b00001.
Ma Z, Antoniou P, Zhang P, Skourtis SS, Beratan DN. A Nonequilibrium Molecular Dynamics Study of Infrared Perturbed Electron Transfer. Journal of chemical theory and computation. 2018 Sep;14(9):4818–4832.
Journal cover image

Published In

Journal of chemical theory and computation

DOI

EISSN

1549-9626

ISSN

1549-9618

Publication Date

September 2018

Volume

14

Issue

9

Start / End Page

4818 / 4832

Related Subject Headings

  • Chemical Physics
  • 3407 Theoretical and computational chemistry
  • 3406 Physical chemistry
  • 0803 Computer Software
  • 0601 Biochemistry and Cell Biology
  • 0307 Theoretical and Computational Chemistry